Experiment set32S535 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 3 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -4.0 -5.2 pantoate--beta-alanine ligase compare
PS417_22450 -3.8 -2.6 ATP-dependent DNA helicase RuvA compare
PS417_06680 -3.6 -5.6 nuclease PIN compare
PS417_27795 -3.3 -1.3 orotate phosphoribosyltransferase compare
PS417_27870 -3.2 -3.4 ATP-dependent DNA helicase RecG compare
PS417_01915 -2.8 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_01580 -2.7 -2.6 imidazole glycerol phosphate synthase compare
PS417_21480 -2.7 -2.3 23S rRNA pseudouridylate synthase compare
PS417_04380 -2.5 -1.7 ABC transporter permease compare
PS417_16555 -2.3 -2.7 cupin compare
PS417_26730 -2.2 -1.3 pyrroline-5-carboxylate reductase compare
PS417_05595 -2.1 -9.8 ornithine carbamoyltransferase compare
PS417_03560 -2.1 -2.2 GTP-binding protein compare
PS417_27195 -2.1 -1.8 N-acetylglutamate synthase compare
PS417_06375 -2.1 -0.8 deoxycytidine triphosphate deaminase compare
PS417_01855 -2.0 -3.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_27425 -2.0 -6.8 exopolyphosphatase compare
PS417_13510 -2.0 -1.8 polyketide cyclase compare
PS417_28050 -2.0 -1.6 hypothetical protein compare
PS417_10645 -2.0 -5.8 magnesium ABC transporter ATPase compare
PS417_23385 -1.9 -9.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_19350 -1.8 -5.5 GTP cyclohydrolase compare
PS417_02510 -1.8 -8.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_02255 -1.8 -4.3 lipopolysaccharide kinase compare
PS417_04365 -1.8 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_23375 -1.7 -2.7 cytochrome C oxidase compare
PS417_21430 -1.7 -2.0 3-oxoacyl-ACP synthase compare
PS417_04420 -1.7 -7.8 histidinol dehydrogenase compare
PS417_23380 -1.7 -3.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_01575 -1.7 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_03260 -1.7 -1.6 5S ribosomal RNA compare
PS417_01565 -1.6 -7.3 imidazole glycerol phosphate synthase compare
PS417_26775 -1.6 -9.2 thiazole synthase compare
PS417_08090 -1.6 -1.3 3-oxoacyl-ACP reductase compare
PS417_24605 -1.6 -3.2 thiamine-phosphate pyrophosphorylase compare
PS417_23370 -1.6 -3.0 protoheme IX farnesyltransferase compare
PS417_04390 -1.6 -3.2 toluene tolerance protein compare
PS417_23390 -1.5 -4.8 ubiquinol oxidase subunit II compare
PS417_01850 -1.5 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_07710 -1.5 -3.1 membrane protein compare
PS417_02555 -1.5 -7.5 exoribonuclease R compare
PS417_06635 -1.5 -2.1 ferredoxin compare
PS417_21425 -1.5 -2.7 4-amino-4-deoxychorismate lyase compare
PS417_00385 -1.4 -1.7 Fur family transcriptional regulator compare
PS417_26605 -1.4 -1.7 malonate decarboxylase subunit beta compare
PS417_02485 -1.4 -2.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_26990 -1.4 -1.0 RNA pyrophosphohydrolase compare
PS417_03830 -1.3 -9.5 protein disaggregation chaperone compare
PS417_28070 -1.3 -6.8 phosphate ABC transporter ATP-binding protein compare
PS417_09590 -1.3 -4.1 membrane protein compare
PS417_00180 -1.3 -2.4 tryptophan synthase subunit alpha compare
PS417_00345 -1.3 -1.3 copper-binding protein compare
PS417_10405 -1.3 -1.6 filamentous hemagglutinin compare
PS417_24600 -1.3 -4.3 hydrogenase compare
PS417_09600 -1.3 -4.0 glycosyl transferase family 1 compare
PS417_08155 -1.2 -1.2 integration host factor subunit beta compare
PS417_22445 -1.2 -2.8 ATP-dependent DNA helicase RuvB compare
PS417_27295 -1.2 -4.2 hypothetical protein compare
PS417_02280 -1.1 -1.2 GlcNAc-PI de-N-acetylase compare
PS417_01560 -1.1 -1.6 imidazoleglycerol-phosphate dehydratase compare
PS417_02720 -1.1 -1.2 TetR family transcriptional regulator compare
PS417_21630 -1.1 -2.0 magnesium transporter compare
PS417_27865 -1.0 -2.0 LysR family transcriptional regulator compare
PS417_16490 -1.0 -1.0 cell division protein FtsK compare
PS417_04385 -1.0 -1.8 organic solvent ABC transporter substrate-binding protein compare
PS417_05985 -1.0 -2.2 chemotaxis protein CheY compare
PS417_20855 -1.0 -1.0 hypothetical protein compare
PS417_21655 -1.0 -1.4 aspartate kinase compare
PS417_02975 -1.0 -2.2 3-dehydroquinate dehydratase compare
PS417_08990 -1.0 -3.0 ABC transporter substrate-binding protein compare
PS417_26815 -1.0 -2.5 peptidase M16 compare
PS417_18355 -1.0 -4.0 DNA-binding protein compare
PS417_04415 -1.0 -4.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_09615 -1.0 -4.6 glycosyl transferase family 1 compare
PS417_26995 -1.0 -5.1 phosphoserine phosphatase compare
PS417_15090 -1.0 -1.8 hypothetical protein compare
PS417_09625 -1.0 -3.2 sugar ABC transporter substrate-binding protein compare
PS417_09150 -0.9 -2.2 energy transducer TonB compare
PS417_28080 -0.9 -7.1 phosphate ABC transporter permease compare
PS417_27835 -0.9 -3.2 endoribonuclease compare
PS417_22205 -0.9 -4.6 potassium transporter TrkH compare
PS417_22530 -0.9 -3.0 hypothetical protein compare
PS417_24745 -0.9 -2.0 gamma-glutamyl phosphate reductase compare
PS417_26275 -0.9 -2.9 glycine/betaine ABC transporter substrate-binding protein compare
PS417_07170 -0.9 -3.1 hypothetical protein compare
PS417_04585 -0.9 -1.4 hypothetical protein compare
PS417_22620 -0.9 -2.0 pyruvate kinase compare
PS417_09595 -0.9 -4.0 membrane protein compare
PS417_01185 -0.9 -3.6 ribosomal protein S6 modification protein compare
PS417_19955 -0.9 -1.7 hypothetical protein compare
PS417_18425 -0.9 -1.4 sporulation protein compare
PS417_11925 -0.8 -2.2 hypothetical protein compare
PS417_04440 -0.8 -2.3 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_03465 -0.8 -1.4 type III secretion protein compare
PS417_20985 -0.8 -0.5 porin compare
PS417_21320 -0.8 -2.9 transcriptional regulator compare
PS417_05830 -0.8 -2.5 hypothetical protein compare
PS417_02880 -0.8 -1.2 copper chaperone compare
PS417_08365 -0.8 -1.0 hypothetical protein compare
PS417_04650 -0.8 -0.4 D-alanine--D-alanine ligase compare
PS417_22535 -0.8 -2.8 ornithine acetyltransferase compare
PS417_12585 -0.8 -5.1 acriflavine resistance protein B compare
PS417_27585 -0.8 -1.2 diaminopimelate epimerase compare
PS417_00160 -0.8 -3.4 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_06205 -0.8 -3.8 methionine aminopeptidase compare
PS417_07615 -0.8 -2.6 TetR family transcriptional regulator compare
PS417_02270 -0.8 -2.0 carbamoyltransferase compare
PS417_23810 -0.8 -4.8 acetolactate synthase 3 catalytic subunit compare
PS417_01955 -0.8 -5.6 peptidase compare
PS417_22400 -0.7 -4.9 7-cyano-7-deazaguanine synthase compare
PS417_22575 -0.7 -4.2 exonuclease I compare
PS417_00080 -0.7 -4.4 potassium transporter peripheral membrane component compare
PS417_24570 -0.7 -2.2 AsnC family transcriptional regulator compare
PS417_23995 -0.7 -0.8 preprotein translocase subunit SecG compare
PS417_06095 -0.7 -1.7 energy transducer TonB compare
PS417_05695 -0.7 -2.8 transcriptional regulator compare
PS417_25720 -0.7 -4.3 anthranilate synthase component II compare
PS417_27640 -0.7 -1.1 TetR family transcriptional regulator compare
PS417_08590 -0.7 -1.5 hypothetical protein compare
PS417_22260 -0.7 -1.4 segregation and condensation protein B compare
PS417_17215 -0.7 -1.5 peptidylprolyl isomerase compare
PS417_24935 -0.7 -1.0 hypothetical protein compare
PS417_02870 -0.7 -4.2 TonB-dependent receptor compare
PS417_02455 -0.7 -2.8 putative transporter, required for glycine utilization (from data) compare
PS417_06825 -0.7 -1.0 hypothetical protein compare
PS417_14140 -0.7 -1.8 membrane protein compare
PS417_24385 -0.7 -3.3 tRNA (uracil-5-)-methyltransferase compare
PS417_06685 -0.7 -0.8 beta-ketoadipyl CoA thiolase compare
PS417_18545 -0.7 -2.0 cell division protein compare
PS417_09470 -0.7 -1.1 hypothetical protein compare
PS417_05200 -0.7 -2.1 DNA recombination protein RecO compare
PS417_01620 -0.7 -2.0 preprotein translocase subunit SecB compare
PS417_18310 -0.7 -0.5 hypothetical protein compare
PS417_15480 -0.7 -1.4 ABC transporter substrate-binding protein compare
PS417_22405 -0.7 -3.8 7-carboxy-7-deazaguanine synthase compare
PS417_16915 -0.7 -4.0 hemolysin D compare
PS417_15115 -0.7 -2.5 exonuclease SbcD compare
PS417_01710 -0.7 -3.5 histidine utilization repressor compare
PS417_12695 -0.6 -2.4 mannitol dehydrogenase compare
PS417_27715 -0.6 -1.4 Fe-S oxidoreductase compare
PS417_23805 -0.6 -2.5 acetolactate synthase 3 regulatory subunit compare
PS417_04270 -0.6 -3.6 ribonuclease G compare
PS417_28085 -0.6 -4.8 phosphate-binding protein compare
PS417_06145 -0.6 -0.9 hypothetical protein compare
PS417_20715 -0.6 -1.1 cytochrome Cbb3 compare
PS417_15425 -0.6 -2.6 acetyltransferase compare
PS417_19665 -0.6 -2.0 flagellar motor protein MotD compare
PS417_06355 -0.6 -1.4 protein-L-isoaspartate O-methyltransferase compare
PS417_25730 -0.6 -2.0 phosphoglycolate phosphatase compare
PS417_27605 -0.6 -3.7 hypothetical protein compare
PS417_08540 -0.6 -1.5 RNA helicase compare
PS417_22375 -0.6 -0.8 cold-shock protein compare
PS417_07140 -0.6 -2.2 peptidase M48 compare
PS417_17490 -0.6 -1.3 ABC transporter ATP-binding protein compare
PS417_09830 -0.6 -2.1 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_26900 -0.6 -0.8 L-cystine transporter tcyP compare
PS417_28510 -0.6 -2.9 chromosome partitioning protein compare
PS417_07695 -0.6 -3.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_22570 -0.6 -0.6 H-NS histone compare
PS417_00705 -0.6 -0.9 MarR family transcriptional regulator compare
PS417_27305 -0.6 -2.8 5-formyltetrahydrofolate cyclo-ligase compare
PS417_23900 -0.6 -3.3 poly(A) polymerase compare
PS417_12280 -0.6 -1.6 MerR family transcriptional regulator compare
PS417_07305 -0.6 -1.5 3-beta hydroxysteroid dehydrogenase compare
PS417_27300 -0.6 -0.6 cell division protein ZapA compare
PS417_26985 -0.6 -2.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_04410 -0.6 -1.3 hypothetical protein compare
PS417_28075 -0.6 -2.7 phosphate ABC transporter permease compare
PS417_27245 -0.6 -1.2 aminotransferase DegT compare
PS417_12805 -0.6 -4.2 glycogen branching protein compare
PS417_07120 -0.6 -2.3 RNA polymerase sigma-H factor compare
PS417_09585 -0.6 -2.9 acetyltransferase compare
PS417_13270 -0.6 -2.1 lipoprotein compare
PS417_01285 -0.6 -0.8 haloacid dehalogenase compare
PS417_12310 -0.5 -2.8 methionine synthase compare
PS417_01605 -0.5 -0.6 phosphoglycerate mutase compare
PS417_13990 -0.5 -1.7 LysR family transcriptional regulator compare
PS417_02765 -0.5 -1.2 phosphate starvation-inducible protein PsiF compare
PS417_25765 -0.5 -1.4 transcriptional regulator compare
PS417_03815 -0.5 -1.5 DNA transporter compare
PS417_21000 -0.5 -1.4 CrfX protein compare
PS417_23135 -0.5 -0.8 GTP-binding protein compare
PS417_27290 -0.5 -1.2 hypothetical protein compare
PS417_19160 -0.5 -2.8 hypothetical protein compare
PS417_00655 -0.5 -3.4 DSBA oxidoreductase compare
PS417_24115 -0.5 -1.3 hypothetical protein compare
PS417_21475 -0.5 -1.9 HAD family hydrolase compare
PS417_08925 -0.5 -2.2 membrane protein compare
PS417_17375 -0.5 -1.1 C4-dicarboxylate ABC transporter compare
PS417_06365 -0.5 -3.6 RNA polymerase sigma factor compare
PS417_00455 -0.5 -1.0 hypothetical protein compare
PS417_15435 -0.5 -1.2 metallophosphatase compare
PS417_02460 -0.5 -2.8 epoxyqueuosine reductase compare
PS417_13575 -0.5 -1.6 succinylglutamate desuccinylase compare
PS417_12355 -0.5 -1.1 magnesium chelatase compare
PS417_23910 -0.5 -1.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_18395 -0.5 -1.2 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_25700 -0.5 -1.3 cyclic AMP receptor protein compare
PS417_18105 -0.5 -0.8 iron-dicitrate transporter substrate-binding subunit compare
PS417_19675 -0.5 -2.0 chemotaxis protein CheY compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms