Experiment set32S534 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 2 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_28050 -3.9 -3.6 hypothetical protein compare
PS417_27195 -3.8 -2.0 N-acetylglutamate synthase compare
PS417_23915 -3.3 -4.9 pantoate--beta-alanine ligase compare
PS417_01605 -2.9 -2.0 phosphoglycerate mutase compare
PS417_06680 -2.8 -6.0 nuclease PIN compare
PS417_04380 -2.5 -1.7 ABC transporter permease compare
PS417_22450 -2.4 -2.1 ATP-dependent DNA helicase RuvA compare
PS417_27870 -2.2 -3.0 ATP-dependent DNA helicase RecG compare
PS417_26730 -2.2 -1.2 pyrroline-5-carboxylate reductase compare
PS417_03260 -2.1 -1.7 5S ribosomal RNA compare
PS417_01855 -2.1 -4.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_22445 -2.0 -3.3 ATP-dependent DNA helicase RuvB compare
PS417_08125 -2.0 -0.8 prephenate dehydratase compare
PS417_22565 -2.0 -0.8 formyltetrahydrofolate deformylase compare
PS417_09600 -2.0 -5.5 glycosyl transferase family 1 compare
PS417_09590 -1.9 -4.0 membrane protein compare
PS417_22570 -1.9 -1.3 H-NS histone compare
PS417_23375 -1.9 -2.7 cytochrome C oxidase compare
PS417_10645 -1.8 -5.2 magnesium ABC transporter ATPase compare
PS417_16555 -1.8 -2.1 cupin compare
PS417_04365 -1.7 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_19350 -1.7 -3.6 GTP cyclohydrolase compare
PS417_02555 -1.6 -8.8 exoribonuclease R compare
PS417_27425 -1.6 -5.6 exopolyphosphatase compare
PS417_05595 -1.5 -7.8 ornithine carbamoyltransferase compare
PS417_27865 -1.5 -1.8 LysR family transcriptional regulator compare
PS417_00650 -1.4 -1.3 LysR family transcriptional regulator compare
PS417_00180 -1.4 -2.4 tryptophan synthase subunit alpha compare
PS417_23385 -1.4 -6.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_26775 -1.4 -6.4 thiazole synthase compare
PS417_24600 -1.3 -5.8 hydrogenase compare
PS417_27795 -1.3 -0.7 orotate phosphoribosyltransferase compare
PS417_02975 -1.3 -2.9 3-dehydroquinate dehydratase compare
PS417_16490 -1.3 -1.2 cell division protein FtsK compare
PS417_01560 -1.3 -2.2 imidazoleglycerol-phosphate dehydratase compare
PS417_22375 -1.2 -1.3 cold-shock protein compare
PS417_02255 -1.2 -2.5 lipopolysaccharide kinase compare
PS417_02485 -1.2 -2.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_28070 -1.2 -6.6 phosphate ABC transporter ATP-binding protein compare
PS417_13075 -1.2 -2.3 hypothetical protein compare
PS417_15095 -1.2 -2.4 hypothetical protein compare
PS417_03830 -1.2 -7.2 protein disaggregation chaperone compare
PS417_08580 -1.2 -5.0 histidine kinase compare
PS417_21655 -1.2 -1.4 aspartate kinase compare
PS417_09595 -1.1 -3.9 membrane protein compare
PS417_02510 -1.1 -2.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_04375 -1.1 -1.1 ABC transporter ATP-binding protein compare
PS417_09585 -1.1 -4.8 acetyltransferase compare
PS417_26990 -1.1 -0.7 RNA pyrophosphohydrolase compare
PS417_23390 -1.1 -4.5 ubiquinol oxidase subunit II compare
PS417_09615 -1.1 -3.7 glycosyl transferase family 1 compare
PS417_01575 -1.0 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01850 -1.0 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_26605 -1.0 -1.3 malonate decarboxylase subunit beta compare
PS417_04420 -1.0 -6.4 histidinol dehydrogenase compare
PS417_01580 -1.0 -1.2 imidazole glycerol phosphate synthase compare
PS417_23380 -1.0 -2.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_13510 -1.0 -1.1 polyketide cyclase compare
PS417_28080 -1.0 -7.0 phosphate ABC transporter permease compare
PS417_23810 -1.0 -5.5 acetolactate synthase 3 catalytic subunit compare
PS417_07140 -1.0 -2.0 peptidase M48 compare
PS417_28230 -1.0 -2.8 transcriptional regulator compare
PS417_23995 -0.9 -0.9 preprotein translocase subunit SecG compare
PS417_27705 -0.9 -1.6 amino acid dehydrogenase compare
PS417_21430 -0.9 -1.2 3-oxoacyl-ACP synthase compare
PS417_22620 -0.9 -2.8 pyruvate kinase compare
PS417_24935 -0.9 -1.1 hypothetical protein compare
PS417_09245 -0.9 -1.4 recombinase RdgC compare
PS417_04440 -0.9 -2.0 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_04390 -0.9 -1.9 toluene tolerance protein compare
PS417_01920 -0.9 -0.9 ATP-dependent protease subunit HslV compare
PS417_13055 -0.8 -1.9 aminotransferase compare
PS417_07695 -0.8 -3.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_23805 -0.8 -1.5 acetolactate synthase 3 regulatory subunit compare
PS417_24115 -0.8 -2.0 hypothetical protein compare
PS417_12490 -0.8 -1.4 autotransporter adhesin compare
PS417_18730 -0.8 -1.4 ABC transporter permease compare
PS417_15975 -0.8 -1.9 glutamate carboxypeptidase compare
PS417_13145 -0.8 -1.9 50S ribosomal protein L21 compare
PS417_01565 -0.8 -3.2 imidazole glycerol phosphate synthase compare
PS417_22895 -0.8 -5.2 tyrosine recombinase XerD compare
PS417_25700 -0.8 -2.0 cyclic AMP receptor protein compare
PS417_15090 -0.8 -1.5 hypothetical protein compare
PS417_20985 -0.8 -0.5 porin compare
PS417_25710 -0.8 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_08105 -0.8 -5.7 N-ethylammeline chlorohydrolase compare
PS417_05325 -0.7 -1.5 fimbrial protein compare
PS417_15125 -0.7 -2.0 glutathione S-transferase compare
PS417_11810 -0.7 -1.9 oxidoreductase compare
PS417_22990 -0.7 -1.3 iron dicitrate transport regulator FecR compare
PS417_11705 -0.7 -3.7 cyclic peptide transporter compare
PS417_24605 -0.7 -1.5 thiamine-phosphate pyrophosphorylase compare
PS417_27300 -0.7 -0.6 cell division protein ZapA compare
PS417_02880 -0.7 -1.0 copper chaperone compare
PS417_07170 -0.7 -2.1 hypothetical protein compare
PS417_08685 -0.7 -1.3 flagellar hook-length control protein FliK compare
PS417_03785 -0.7 -0.9 pilus assembly protein PilV compare
PS417_06530 -0.7 -1.4 membrane protein compare
PS417_02990 -0.7 -2.2 hypothetical protein compare
PS417_17675 -0.7 -1.4 ABC transporter compare
PS417_22535 -0.7 -3.0 ornithine acetyltransferase compare
PS417_16560 -0.7 -1.6 GNAT family acetyltransferase compare
PS417_02395 -0.7 -2.2 DNA topoisomerase IV subunit B compare
PS417_01715 -0.7 -1.0 hypothetical protein compare
PS417_09915 -0.7 -1.5 hypothetical protein compare
PS417_02475 -0.7 -1.5 N-acetylmuramoyl-L-alanine amidase compare
PS417_25720 -0.7 -4.3 anthranilate synthase component II compare
PS417_23910 -0.7 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_00385 -0.7 -0.9 Fur family transcriptional regulator compare
PS417_19655 -0.7 -1.8 chemotaxis protein CheW compare
PS417_08410 -0.7 -1.1 hypothetical protein compare
PS417_06780 -0.7 -2.2 TetR family transcriptional regulator compare
PS417_08925 -0.7 -3.0 membrane protein compare
PS417_27605 -0.7 -2.6 hypothetical protein compare
PS417_23370 -0.7 -2.2 protoheme IX farnesyltransferase compare
PS417_21105 -0.7 -3.6 aminodeoxychorismate synthase compare
PS417_07710 -0.7 -1.8 membrane protein compare
PS417_24240 -0.7 -3.7 membrane protein compare
PS417_06200 -0.7 -3.1 protein-PII uridylyltransferase compare
PS417_19645 -0.6 -0.9 chemotaxis protein compare
PS417_24155 -0.6 -0.4 ATP-binding protein compare
PS417_03560 -0.6 -0.8 GTP-binding protein compare
PS417_06205 -0.6 -4.2 methionine aminopeptidase compare
PS417_26850 -0.6 -0.7 twin-arginine translocation pathway signal protein compare
PS417_15540 -0.6 -1.2 NUDIX hydrolase compare
PS417_24370 -0.6 -0.7 (2Fe-2S)-binding protein compare
PS417_24895 -0.6 -1.1 hypothetical protein compare
PS417_10405 -0.6 -0.9 filamentous hemagglutinin compare
PS417_27595 -0.6 -1.5 recombinase XerC compare
PS417_07615 -0.6 -2.4 TetR family transcriptional regulator compare
PS417_22575 -0.6 -3.0 exonuclease I compare
PS417_01590 -0.6 -1.4 polysaccharide deacetylase compare
PS417_06845 -0.6 -0.9 lipoprotein compare
PS417_25895 -0.6 -1.4 glyoxalase compare
PS417_23025 -0.6 -2.4 murein transglycosylase compare
PS417_21855 -0.6 -2.2 hypothetical protein compare
PS417_07795 -0.6 -2.1 hypothetical protein compare
PS417_25310 -0.6 -1.5 hypothetical protein compare
PS417_11055 -0.6 -1.8 AraC family transcriptional regulator compare
PS417_02280 -0.6 -0.7 GlcNAc-PI de-N-acetylase compare
PS417_11830 -0.6 -1.2 membrane protein compare
PS417_01620 -0.6 -1.9 preprotein translocase subunit SecB compare
PS417_06790 -0.6 -2.6 arabinose transporter permease compare
PS417_08335 -0.6 -0.9 hypothetical protein compare
PS417_08540 -0.6 -1.3 RNA helicase compare
PS417_01570 -0.6 -1.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_06895 -0.6 -1.9 DNA-binding protein compare
PS417_23900 -0.6 -2.9 poly(A) polymerase compare
PS417_06445 -0.6 -1.2 iron-siderophore ABC transporter permease compare
PS417_22400 -0.5 -3.5 7-cyano-7-deazaguanine synthase compare
PS417_25730 -0.5 -3.1 phosphoglycolate phosphatase compare
PS417_10550 -0.5 -3.1 DNA topoisomerase III compare
PS417_09440 -0.5 -1.0 MerR family transcriptional regulator compare
PS417_03475 -0.5 -0.5 type III secretion protein compare
PS417_02870 -0.5 -3.4 TonB-dependent receptor compare
PS417_07560 -0.5 -0.6 universal stress protein UspA compare
PS417_07565 -0.5 -1.1 hypothetical protein compare
PS417_22050 -0.5 -1.4 ribonuclease BN compare
PS417_07950 -0.5 -1.9 MFS transporter compare
PS417_12805 -0.5 -3.8 glycogen branching protein compare
PS417_26335 -0.5 -1.5 BetI family transcriptional regulator compare
PS417_23855 -0.5 -1.0 ABC transporter substrate-binding protein compare
PS417_07640 -0.5 -1.3 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_11625 -0.5 -2.2 fumarate hydratase compare
PS417_06645 -0.5 -3.7 RNA polymerase-associated protein RapA compare
PS417_00045 -0.5 -0.9 glycerol acyltransferase compare
PS417_08650 -0.5 -2.0 transcriptional regulator compare
PS417_23950 -0.5 -0.8 polynucleotide phosphorylase/polyadenylase compare
PS417_09865 -0.5 -1.2 hypothetical protein compare
PS417_09625 -0.5 -1.7 sugar ABC transporter substrate-binding protein compare
PS417_24745 -0.5 -0.8 gamma-glutamyl phosphate reductase compare
PS417_12585 -0.5 -3.1 acriflavine resistance protein B compare
PS417_21425 -0.5 -0.8 4-amino-4-deoxychorismate lyase compare
PS417_07575 -0.5 -2.0 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_22935 -0.5 -1.5 hypothetical protein compare
PS417_22530 -0.5 -2.4 hypothetical protein compare
PS417_02210 -0.5 -3.1 diguanylate cyclase compare
PS417_08295 -0.5 -1.3 ATPase compare
PS417_04270 -0.5 -2.7 ribonuclease G compare
PS417_18780 -0.5 -1.0 flavin reductase compare
PS417_04385 -0.5 -1.0 organic solvent ABC transporter substrate-binding protein compare
PS417_11485 -0.5 -1.2 AraC family transcriptional regulator compare
PS417_26520 -0.5 -2.8 amino acid ABC transporter substrate-binding protein compare
PS417_09830 -0.5 -2.8 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_27290 -0.5 -1.2 hypothetical protein compare
PS417_10860 -0.5 -1.2 flagellar basal body rod protein FlgG compare
PS417_11720 -0.5 -1.9 class V aminotransferase compare
PS417_18435 -0.5 -1.4 hypothetical protein compare
PS417_27245 -0.5 -1.1 aminotransferase DegT compare
PS417_28075 -0.5 -1.9 phosphate ABC transporter permease compare
PS417_02725 -0.5 -1.0 hypothetical protein compare
PS417_20855 -0.5 -0.8 hypothetical protein compare
PS417_26645 -0.5 -1.5 chemotaxis protein compare
PS417_14100 -0.5 -2.6 alpha-ketoglutarate-dependent dioxygenase compare
PS417_22550 -0.5 -1.6 ATP-binding protein compare
PS417_23410 -0.5 -1.9 membrane protein compare
PS417_10125 -0.5 -1.5 hypothetical protein compare
PS417_08990 -0.5 -1.6 ABC transporter substrate-binding protein compare
PS417_27835 -0.5 -1.7 endoribonuclease compare
PS417_08395 -0.5 -2.8 ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms