Experiment set32S534 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 2 mM; solid stress

200 most detrimental genes:

  gene name fitness t score description  
PS417_19825 +1.6 15.5 ATPase AAA compare
PS417_16370 +1.4 8.2 chemotaxis protein CheY compare
PS417_20635 +1.3 2.9 ABC transporter ATP-binding protein compare
PS417_10720 +1.2 5.6 chemotaxis protein CheY compare
PS417_01405 +1.1 3.9 sugar transporter compare
PS417_06540 +1.0 3.2 membrane protein compare
PS417_01410 +1.0 6.8 transporter compare
PS417_01915 +1.0 0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_28265 +1.0 2.0 pyridoxamine kinase compare
PS417_14590 +0.9 2.6 LysR family transcriptional regulator compare
PS417_01415 +0.9 6.7 glycosyl transferase family 1 compare
PS417_08200 +0.8 2.8 hypothetical protein compare
PS417_20650 +0.8 5.9 hypothetical protein compare
PS417_19560 +0.8 5.7 amino acid ABC transporter substrate-binding protein compare
PS417_03080 +0.8 1.3 hypothetical protein compare
PS417_15650 +0.8 2.7 glutamine amidotransferase compare
PS417_00370 +0.8 1.4 hypothetical protein compare
PS417_08510 +0.8 1.6 LysR family transcriptional regulator compare
PS417_01395 +0.8 7.5 biofilm formation protein PelB compare
PS417_01390 +0.8 6.2 PbsX family transcriptional regulator compare
PS417_08230 +0.8 2.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_03725 +0.8 2.6 acyltransferase compare
PS417_17070 +0.8 2.7 RNA polymerase subunit sigma-24 compare
PS417_17610 +0.8 2.0 AsnC family transcriptional regulator compare
PS417_24275 +0.8 6.6 diguanylate phosphodiesterase compare
PS417_02225 +0.8 2.9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_02560 +0.8 1.2 23S rRNA methyltransferase compare
PS417_18055 +0.8 1.4 general secretion pathway protein GspK compare
PS417_18310 +0.8 0.8 hypothetical protein compare
PS417_20655 +0.7 5.1 group 1 glycosyl transferase compare
PS417_06970 +0.7 2.3 LysR family transcriptional regulator compare
PS417_01420 +0.7 5.8 histidine kinase compare
PS417_08205 +0.7 3.8 acetyltransferase compare
PS417_22945 +0.7 1.3 phosphoribosylglycinamide formyltransferase compare
PS417_20660 +0.7 5.2 hypothetical protein compare
PS417_12515 +0.7 2.2 lactate dehydrogenase compare
PS417_26685 +0.7 1.6 hypothetical protein compare
PS417_09695 +0.7 1.8 hydrolase compare
PS417_11865 +0.6 1.4 xylose isomerase compare
PS417_08185 +0.6 2.7 glycosyl transferase compare
PS417_08025 +0.6 1.4 acetylornithine aminotransferase compare
PS417_22210 +0.6 1.0 AraC family transcriptional regulator compare
PS417_04290 +0.6 2.0 hypothetical protein compare
PS417_17035 +0.6 1.3 Cro/Cl family transcriptional regulator compare
PS417_19500 +0.6 2.1 antibiotic synthesis protein MbtH compare
PS417_27875 +0.6 4.3 histidine kinase compare
PS417_24885 +0.6 3.3 transcriptional regulator compare
PS417_19830 +0.6 2.1 flagellar assembly protein FliT compare
PS417_11445 +0.6 2.8 enoyl-CoA hydratase compare
PS417_16720 +0.6 1.2 membrane protein compare
PS417_08190 +0.6 4.9 membrane protein compare
PS417_08320 +0.6 1.6 metal-chelation protein CHAD compare
PS417_12520 +0.6 1.0 hypothetical protein compare
PS417_10305 +0.6 1.9 hypothetical protein compare
PS417_26155 +0.6 1.4 hypothetical protein compare
PS417_21000 +0.6 1.3 CrfX protein compare
PS417_20310 +0.6 2.0 hypothetical protein compare
PS417_05365 +0.6 1.6 FAD-binding protein compare
PS417_06675 +0.6 2.1 ATP-dependent helicase compare
PS417_19620 +0.6 2.0 hypothetical protein compare
PS417_05345 +0.6 1.6 exotoxin compare
PS417_02745 +0.6 1.2 FMN-dependent NADH-azoreductase compare
PS417_25380 +0.5 2.0 hypothetical protein compare
PS417_27040 +0.5 1.7 3-phosphoglycerate dehydrogenase compare
PS417_26295 +0.5 2.0 gamma-butyrobetaine dioxygenase compare
PS417_07985 +0.5 1.4 AbrB family transcriptional regulator compare
PS417_04410 +0.5 1.8 hypothetical protein compare
PS417_21840 +0.5 2.3 chemotaxis protein compare
PS417_02695 +0.5 1.4 protein hupE compare
PS417_11950 +0.5 1.3 hypothetical protein compare
PS417_21015 +0.5 1.8 EstX protein compare
PS417_00625 +0.5 3.3 taurine dioxygenase compare
PS417_12540 +0.5 1.5 hypothetical protein compare
PS417_09085 +0.5 1.2 hypothetical protein compare
PS417_17945 +0.5 0.8 hypothetical protein compare
PS417_14165 +0.5 2.0 ArsR family transcriptional regulator compare
PS417_13445 +0.5 1.7 D-aminopeptidase compare
PS417_08245 +0.5 0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_22765 +0.5 2.4 InaA protein compare
PS417_02160 +0.5 1.0 hypothetical protein compare
PS417_26785 +0.5 2.5 membrane protein compare
PS417_20645 +0.5 4.1 membrane protein compare
PS417_01790 +0.5 3.3 glucan biosynthesis protein G compare
PS417_04305 +0.5 1.2 aspartate ammonia-lyase compare
PS417_05160 +0.5 0.9 DNA polymerase III subunit chi compare
PS417_08860 +0.5 2.5 small component of pyruvate transporter (yjcH-like) (from data) compare
PS417_12110 +0.5 0.9 ATP-binding protein compare
PS417_26230 +0.5 2.0 electron transfer flavoprotein subunit alpha compare
PS417_22085 +0.5 1.1 aldehyde dehydrogenase compare
PS417_01795 +0.5 4.0 glucosyltransferase MdoH compare
PS417_13965 +0.5 1.8 acetoin utilization protein compare
PS417_19275 +0.5 1.0 hypothetical protein compare
PS417_27770 +0.5 1.7 hypothetical protein compare
PS417_27135 +0.5 0.5 glutamine synthetase compare
PS417_20080 +0.5 1.7 peptidase P60 compare
PS417_17925 +0.5 1.7 acyl-CoA dehydrogenase compare
PS417_13645 +0.5 1.1 ABC transporter compare
PS417_20670 +0.5 3.5 glycosyl transferase family 2 compare
PS417_07875 +0.5 0.8 hypothetical protein compare
PS417_05760 +0.5 2.6 phage tail protein compare
PS417_08620 +0.5 0.8 hypothetical protein compare
PS417_02440 +0.5 1.3 flagellar motor protein MotB compare
PS417_17370 +0.5 2.3 C4-dicarboxylate ABC transporter compare
PS417_02915 +0.5 1.8 precorrin-3B C17-methyltransferase compare
PS417_08545 +0.5 1.3 aromatic ring-opening dioxygenase LigB compare
PS417_14810 +0.4 1.5 Fosmidomycin resistance protein compare
PS417_03810 +0.4 0.8 hypothetical protein compare
PS417_28405 +0.4 1.7 hypothetical protein compare
PS417_24775 +0.4 2.3 dehydratase compare
PS417_07455 +0.4 1.2 glutamine amidotransferase compare
PS417_13950 +0.4 2.4 LuxR family transcriptional regulator compare
PS417_22300 +0.4 1.0 LTXXQ domain protein compare
PS417_06730 +0.4 1.2 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_23455 +0.4 1.9 LrgA compare
PS417_05650 +0.4 1.8 leucyl-tRNA synthetase compare
PS417_16055 +0.4 1.4 biopolymer transporter TolR compare
PS417_15465 +0.4 1.8 carboxynorspermidine decarboxylase compare
PS417_18690 +0.4 1.4 aromatic amino acid aminotransferase compare
PS417_08195 +0.4 2.4 hypothetical protein compare
PS417_05990 +0.4 1.4 diguanylate cyclase compare
PS417_16205 +0.4 1.6 hypothetical protein compare
PS417_08225 +0.4 1.8 acetolactate synthase compare
PS417_28030 +0.4 1.2 hypothetical protein compare
PS417_13245 +0.4 1.6 saccharopine dehydrogenase compare
PS417_14515 +0.4 1.1 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_23470 +0.4 2.1 histidine kinase compare
PS417_28225 +0.4 0.9 hypothetical protein compare
PS417_01375 +0.4 1.3 hypothetical protein compare
PS417_13185 +0.4 1.0 RND transporter compare
PS417_12400 +0.4 1.9 oxidoreductase compare
PS417_13755 +0.4 1.6 oxidoreductase compare
PS417_19065 +0.4 0.7 monooxygenase compare
PS417_16275 +0.4 1.7 hypothetical protein compare
PS417_15100 +0.4 0.7 BatB protein compare
PS417_27315 +0.4 0.8 hypothetical protein compare
PS417_03655 +0.4 1.3 short-chain dehydrogenase compare
PS417_26305 +0.4 1.4 AraC family transcriptional regulator compare
PS417_15255 +0.4 1.6 serine/threonine protein kinase compare
PS417_15275 +0.4 2.3 type VI secretion protein compare
PS417_27085 +0.4 0.9 AraC family transcriptional regulator compare
PS417_07440 +0.4 1.6 cyclic nucleotide-binding protein compare
PS417_26835 +0.4 1.2 3-mercaptopyruvate sulfurtransferase compare
PS417_22330 +0.4 1.4 arginine deiminase compare
PS417_27100 +0.4 1.6 phosphohydrolase compare
PS417_05610 +0.4 1.1 bacterioferritin compare
PS417_19070 +0.4 2.3 hypothetical protein compare
PS417_04425 +0.4 2.6 histidinol-phosphate aminotransferase compare
PS417_21360 +0.4 0.7 termination factor Rho compare
PS417_17550 +0.4 1.7 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_11900 +0.4 3.1 conjugal transfer protein TraR compare
PS417_07020 +0.4 2.2 chemotaxis protein compare
PS417_14540 +0.4 0.9 cytochrome C oxidase subunit III compare
PS417_20610 +0.4 0.9 hypothetical protein compare
PS417_07870 +0.4 1.4 hypothetical protein compare
PS417_13395 +0.4 3.0 phosphoglucomutase compare
PS417_27640 +0.4 0.7 TetR family transcriptional regulator compare
PS417_27155 +0.4 1.0 aliphatic sulfonates transport ATP-binding subunit compare
PS417_28135 +0.4 2.5 sodium:alanine symporter compare
PS417_00195 +0.4 0.7 hypothetical protein compare
PS417_10330 +0.4 1.6 histidine kinase compare
PS417_24705 +0.4 1.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_02020 +0.4 2.1 LysR family transcriptional regulator compare
PS417_06575 +0.4 1.8 DoxX compare
PS417_25645 +0.4 1.8 peptidase M23 compare
PS417_20340 +0.4 1.3 hypothetical protein compare
PS417_03015 +0.4 2.9 hypothetical protein compare
PS417_00835 +0.4 2.2 hypothetical protein compare
PS417_18755 +0.4 0.9 CrtK compare
PS417_16870 +0.4 1.6 short-chain dehydrogenase compare
PS417_02055 +0.4 1.5 methyltransferase compare
PS417_01360 +0.4 1.8 4-oxalocrotonate tautomerase compare
PS417_27000 +0.4 1.8 membrane protein compare
PS417_13575 +0.4 1.7 succinylglutamate desuccinylase compare
PS417_26390 +0.4 1.0 acyltransferase compare
PS417_21900 +0.4 1.1 allophanate hydrolase compare
PS417_00455 +0.4 1.0 hypothetical protein compare
PS417_26580 +0.4 1.5 malonate transporter compare
PS417_09150 +0.4 1.1 energy transducer TonB compare
PS417_19555 +0.4 1.7 RNA polymerase sigma70 compare
PS417_04220 +0.4 0.8 4-carboxymuconolactone decarboxylase compare
PS417_26635 +0.4 1.5 hypothetical protein compare
PS417_16715 +0.4 0.8 DoxX family protein compare
PS417_11425 +0.4 2.9 transcriptional regulator compare
PS417_04185 +0.4 0.9 hypothetical protein compare
PS417_28260 +0.4 2.3 VdlD compare
PS417_15935 +0.4 1.3 Rrf2 family transcriptional regulator compare
PS417_21070 +0.4 0.9 aconitate hydratase compare
PS417_00975 +0.4 0.7 hypothetical protein compare
PS417_15135 +0.4 0.9 hypothetical protein compare
PS417_10015 +0.4 0.7 hypothetical protein compare
PS417_01400 +0.4 1.3 hypothetical protein compare
PS417_03025 +0.4 2.5 penicillin-binding protein 1C compare
PS417_25120 +0.4 2.0 capsular biosynthesis protein compare
PS417_06130 +0.4 1.7 hypothetical protein compare
PS417_19870 +0.4 1.8 flagellar rod assembly protein FlgJ compare
PS417_19625 +0.4 1.6 histidine kinase compare
PS417_20825 +0.4 1.2 drug:proton antiporter compare
PS417_18235 +0.3 1.2 nitrile hydratase compare
PS417_17305 +0.3 0.9 hypothetical protein compare
PS417_00915 +0.3 1.5 aminotransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms