Experiment set32S533 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 1 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_28050 -4.7 -4.8 hypothetical protein compare
PS417_21480 -4.7 -3.0 23S rRNA pseudouridylate synthase compare
PS417_23915 -3.7 -5.7 pantoate--beta-alanine ligase compare
PS417_27795 -3.3 -1.2 orotate phosphoribosyltransferase compare
PS417_06680 -2.7 -6.5 nuclease PIN compare
PS417_02880 -2.4 -2.2 copper chaperone compare
PS417_27870 -2.3 -3.2 ATP-dependent DNA helicase RecG compare
PS417_03560 -2.1 -2.1 GTP-binding protein compare
PS417_08125 -2.1 -0.8 prephenate dehydratase compare
PS417_06375 -2.1 -0.8 deoxycytidine triphosphate deaminase compare
PS417_27865 -2.1 -3.2 LysR family transcriptional regulator compare
PS417_27195 -2.1 -1.7 N-acetylglutamate synthase compare
PS417_22565 -2.1 -0.8 formyltetrahydrofolate deformylase compare
PS417_09600 -2.0 -5.7 glycosyl transferase family 1 compare
PS417_23805 -1.9 -5.5 acetolactate synthase 3 regulatory subunit compare
PS417_23810 -1.9 -9.0 acetolactate synthase 3 catalytic subunit compare
PS417_09590 -1.7 -3.9 membrane protein compare
PS417_03260 -1.7 -1.6 5S ribosomal RNA compare
PS417_13510 -1.7 -1.5 polyketide cyclase compare
PS417_24600 -1.7 -8.0 hydrogenase compare
PS417_04385 -1.7 -2.7 organic solvent ABC transporter substrate-binding protein compare
PS417_23375 -1.6 -2.4 cytochrome C oxidase compare
PS417_26605 -1.6 -1.2 malonate decarboxylase subunit beta compare
PS417_10645 -1.6 -4.6 magnesium ABC transporter ATPase compare
PS417_22570 -1.5 -1.1 H-NS histone compare
PS417_02555 -1.5 -8.9 exoribonuclease R compare
PS417_26775 -1.5 -9.4 thiazole synthase compare
PS417_28070 -1.4 -7.1 phosphate ABC transporter ATP-binding protein compare
PS417_09595 -1.4 -5.3 membrane protein compare
PS417_02280 -1.4 -1.7 GlcNAc-PI de-N-acetylase compare
PS417_09585 -1.3 -4.7 acetyltransferase compare
PS417_20855 -1.3 -1.6 hypothetical protein compare
PS417_04365 -1.2 -1.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02385 -1.2 -1.7 esterase compare
PS417_15915 -1.2 -2.0 hypothetical protein compare
PS417_19675 -1.2 -3.6 chemotaxis protein CheY compare
PS417_16555 -1.1 -1.6 cupin compare
PS417_27300 -1.1 -0.9 cell division protein ZapA compare
PS417_02255 -1.1 -1.7 lipopolysaccharide kinase compare
PS417_02975 -1.1 -3.5 3-dehydroquinate dehydratase compare
PS417_23385 -1.1 -5.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_19350 -1.1 -4.0 GTP cyclohydrolase compare
PS417_03830 -1.1 -6.7 protein disaggregation chaperone compare
PS417_22445 -1.1 -2.6 ATP-dependent DNA helicase RuvB compare
PS417_00385 -1.0 -1.3 Fur family transcriptional regulator compare
PS417_01605 -1.0 -1.1 phosphoglycerate mutase compare
PS417_02485 -1.0 -1.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_06145 -1.0 -1.3 hypothetical protein compare
PS417_19955 -1.0 -1.4 hypothetical protein compare
PS417_22450 -1.0 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_21625 -1.0 -1.1 DNA-binding protein compare
PS417_27135 -1.0 -0.7 glutamine synthetase compare
PS417_16490 -1.0 -1.1 cell division protein FtsK compare
PS417_04440 -1.0 -1.8 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_28080 -0.9 -5.9 phosphate ABC transporter permease compare
PS417_09615 -0.9 -2.8 glycosyl transferase family 1 compare
PS417_27425 -0.9 -3.8 exopolyphosphatase compare
PS417_01855 -0.9 -2.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_22990 -0.9 -1.3 iron dicitrate transport regulator FecR compare
PS417_01565 -0.9 -3.7 imidazole glycerol phosphate synthase compare
PS417_19275 -0.9 -1.4 hypothetical protein compare
PS417_08580 -0.9 -4.2 histidine kinase compare
PS417_03145 -0.9 -2.1 acetyl-CoA acetyltransferase compare
PS417_24745 -0.9 -1.5 gamma-glutamyl phosphate reductase compare
PS417_11705 -0.9 -4.3 cyclic peptide transporter compare
PS417_19605 -0.9 -1.0 hypothetical protein compare
PS417_27290 -0.9 -1.9 hypothetical protein compare
PS417_26420 -0.9 -1.4 hypothetical protein compare
PS417_15540 -0.9 -1.3 NUDIX hydrolase compare
PS417_02980 -0.8 -1.3 chemotaxis protein compare
PS417_23380 -0.8 -2.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_08410 -0.8 -1.9 hypothetical protein compare
PS417_04650 -0.8 -0.4 D-alanine--D-alanine ligase compare
PS417_19665 -0.8 -3.6 flagellar motor protein MotD compare
PS417_18395 -0.8 -2.7 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_20985 -0.8 -0.5 porin compare
PS417_04800 -0.8 -2.3 alginate O-acetyltransferase compare
PS417_22895 -0.8 -4.3 tyrosine recombinase XerD compare
PS417_23580 -0.8 -1.2 peptidylprolyl isomerase compare
PS417_05860 -0.8 -3.0 hypothetical protein compare
PS417_01620 -0.8 -1.1 preprotein translocase subunit SecB compare
PS417_04420 -0.8 -4.5 histidinol dehydrogenase compare
PS417_23775 -0.8 -1.2 exodeoxyribonuclease V subunit beta compare
PS417_07615 -0.8 -3.6 TetR family transcriptional regulator compare
PS417_03815 -0.8 -1.6 DNA transporter compare
PS417_00075 -0.8 -2.4 hypothetical protein compare
PS417_18780 -0.8 -1.6 flavin reductase compare
PS417_06895 -0.8 -2.0 DNA-binding protein compare
PS417_19645 -0.8 -1.6 chemotaxis protein compare
PS417_23995 -0.8 -0.7 preprotein translocase subunit SecG compare
PS417_10995 -0.8 -2.6 GntR family transcriptional regulator compare
PS417_27245 -0.8 -1.6 aminotransferase DegT compare
PS417_09625 -0.8 -2.5 sugar ABC transporter substrate-binding protein compare
PS417_21105 -0.8 -4.6 aminodeoxychorismate synthase compare
PS417_08170 -0.8 -4.7 capsular biosynthesis protein compare
PS417_22620 -0.7 -3.3 pyruvate kinase compare
PS417_16320 -0.7 -2.4 protein tyrosine phosphatase compare
PS417_27705 -0.7 -1.3 amino acid dehydrogenase compare
PS417_21990 -0.7 -1.4 LacI family transcriptional regulator compare
PS417_01145 -0.7 -0.8 taurine transporter ATP-binding subunit compare
PS417_19850 -0.7 -4.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_07640 -0.7 -2.4 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_06205 -0.7 -4.3 methionine aminopeptidase compare
PS417_18710 -0.7 -3.5 hypothetical protein compare
PS417_02270 -0.7 -2.1 carbamoyltransferase compare
PS417_00670 -0.7 -3.2 RNA polymerase sigma factor compare
PS417_21595 -0.7 -3.9 flagellar biosynthesis protein FlgN compare
PS417_10405 -0.7 -1.0 filamentous hemagglutinin compare
PS417_21425 -0.7 -1.1 4-amino-4-deoxychorismate lyase compare
PS417_27715 -0.7 -2.0 Fe-S oxidoreductase compare
PS417_19790 -0.7 -3.7 ATP synthase compare
PS417_22060 -0.7 -1.1 hypothetical protein compare
PS417_28075 -0.7 -1.9 phosphate ABC transporter permease compare
PS417_27940 -0.7 -1.5 type VI secretion protein compare
PS417_01920 -0.7 -0.8 ATP-dependent protease subunit HslV compare
PS417_09150 -0.7 -1.6 energy transducer TonB compare
PS417_05160 -0.7 -0.9 DNA polymerase III subunit chi compare
PS417_27585 -0.7 -1.2 diaminopimelate epimerase compare
PS417_00485 -0.7 -2.0 ABC transporter permease compare
PS417_23390 -0.7 -3.6 ubiquinol oxidase subunit II compare
PS417_27110 -0.7 -2.2 spermidine/putrescine ABC transporter permease compare
PS417_04080 -0.6 -1.6 peptide ABC transporter substrate-binding protein compare
PS417_19860 -0.6 -5.1 flagellar hook protein FlgL compare
PS417_25390 -0.6 -2.1 MFS transporter compare
PS417_14280 -0.6 -2.0 hypothetical protein compare
PS417_27605 -0.6 -3.3 hypothetical protein compare
PS417_13580 -0.6 -0.8 AraC family transcriptional regulator compare
PS417_05985 -0.6 -1.0 chemotaxis protein CheY compare
PS417_26770 -0.6 -1.5 tRNA (guanine-N7)-methyltransferase compare
PS417_21630 -0.6 -1.3 magnesium transporter compare
PS417_11075 -0.6 -1.7 hydroxypyruvate isomerase compare
PS417_13855 -0.6 -1.0 acetyl-CoA acetyltransferase compare
PS417_01030 -0.6 -1.0 glutamine ABC transporter substrate-binding protein compare
PS417_19730 -0.6 -3.2 flagellar biosynthesis protein FliR compare
PS417_00185 -0.6 -2.1 tryptophan synthase subunit beta compare
PS417_07695 -0.6 -2.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_18235 -0.6 -2.0 nitrile hydratase compare
PS417_12565 -0.6 -1.6 2-dehydro-3-deoxygluconokinase compare
PS417_02765 -0.6 -1.2 phosphate starvation-inducible protein PsiF compare
PS417_09210 -0.6 -0.8 TetR family transcriptional regulator compare
PS417_18355 -0.6 -3.0 DNA-binding protein compare
PS417_07175 -0.6 -2.4 beta-lactamase compare
PS417_12870 -0.6 -1.2 enoyl-CoA hydratase compare
PS417_04375 -0.6 -0.7 ABC transporter ATP-binding protein compare
PS417_13255 -0.6 -1.7 ABC transporter compare
PS417_17680 -0.6 -2.0 ABC transporter compare
PS417_19735 -0.6 -3.1 flagellar biosynthesis protein FliQ compare
PS417_17000 -0.6 -1.5 MerR family transcriptional regulator compare
PS417_16560 -0.6 -1.6 GNAT family acetyltransferase compare
PS417_16510 -0.6 -2.1 Clp protease ClpX compare
PS417_09620 -0.6 -3.9 lipopolysaccharide biosynthesis protein compare
PS417_23370 -0.6 -2.4 protoheme IX farnesyltransferase compare
PS417_15125 -0.6 -1.4 glutathione S-transferase compare
PS417_02870 -0.6 -3.3 TonB-dependent receptor compare
PS417_01290 -0.6 -1.3 ADP-ribose diphosphatase compare
PS417_02510 -0.6 -2.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_08540 -0.6 -1.4 RNA helicase compare
PS417_05575 -0.6 -4.1 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_05595 -0.6 -3.8 ornithine carbamoyltransferase compare
PS417_06370 -0.6 -0.8 cold-shock protein compare
PS417_19840 -0.6 -4.4 flagellar cap protein FliD compare
PS417_23950 -0.6 -0.8 polynucleotide phosphorylase/polyadenylase compare
PS417_25720 -0.6 -2.9 anthranilate synthase component II compare
PS417_03385 -0.6 -0.8 flavin reductase compare
PS417_00180 -0.6 -1.3 tryptophan synthase subunit alpha compare
PS417_14600 -0.6 -1.6 bleomycin resistance protein compare
PS417_23900 -0.6 -3.4 poly(A) polymerase compare
PS417_23250 -0.6 -2.9 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_27595 -0.6 -0.8 recombinase XerC compare
PS417_25710 -0.6 -0.8 indole-3-glycerol-phosphate synthase compare
PS417_18990 -0.6 -1.3 membrane protein compare
PS417_09245 -0.6 -1.0 recombinase RdgC compare
PS417_19740 -0.6 -3.0 flagellar biosynthesis protein flip compare
PS417_24605 -0.6 -1.2 thiamine-phosphate pyrophosphorylase compare
PS417_00590 -0.6 -1.5 5S ribosomal RNA compare
PS417_08590 -0.6 -1.1 hypothetical protein compare
PS417_05635 -0.6 -3.9 membrane protein compare
PS417_15775 -0.6 -1.2 short-chain dehydrogenase compare
PS417_19695 -0.6 -4.6 flagellar biosynthesis sigma factor compare
PS417_19655 -0.5 -1.6 chemotaxis protein CheW compare
PS417_23910 -0.5 -1.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_04865 -0.5 -1.1 molybdenum cofactor biosynthesis protein MoaC compare
PS417_16255 -0.5 -1.3 RNA polymerase sigma factor compare
PS417_13800 -0.5 -0.9 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_03300 -0.5 -1.6 alanine acetyltransferase compare
PS417_02575 -0.5 -1.9 membrane protein compare
PS417_16520 -0.5 -1.3 cold-shock protein compare
PS417_24570 -0.5 -2.2 AsnC family transcriptional regulator compare
PS417_06780 -0.5 -1.3 TetR family transcriptional regulator compare
PS417_22575 -0.5 -2.6 exonuclease I compare
PS417_09575 -0.5 -1.7 glutathione S-transferase compare
PS417_18865 -0.5 -2.2 hypothetical protein compare
PS417_06040 -0.5 -1.8 hypothetical protein compare
PS417_18060 -0.5 -1.8 general secretion pathway protein GspJ compare
PS417_07470 -0.5 -0.7 hypothetical protein compare
PS417_19800 -0.5 -1.6 flagellar motor switch protein FliG compare
PS417_17645 -0.5 -1.0 RND transporter compare
PS417_17755 -0.5 -0.9 hypothetical protein compare
PS417_08740 -0.5 -1.4 ribose-phosphate pyrophosphokinase compare
PS417_27665 -0.5 -2.3 diguanylate cyclase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms