Experiment set32S532 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 3 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -5.1 -4.9 pantoate--beta-alanine ligase compare
PS417_13510 -3.5 -1.9 polyketide cyclase compare
PS417_01580 -3.1 -2.3 imidazole glycerol phosphate synthase compare
PS417_27870 -2.8 -3.4 ATP-dependent DNA helicase RecG compare
PS417_28050 -2.7 -2.0 hypothetical protein compare
PS417_06680 -2.7 -6.2 nuclease PIN compare
PS417_05595 -2.7 -11.3 ornithine carbamoyltransferase compare
PS417_19350 -2.4 -4.8 GTP cyclohydrolase compare
PS417_01855 -2.4 -3.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_16490 -2.3 -1.8 cell division protein FtsK compare
PS417_27195 -2.3 -2.0 N-acetylglutamate synthase compare
PS417_02555 -2.2 -10.6 exoribonuclease R compare
PS417_26730 -2.2 -1.2 pyrroline-5-carboxylate reductase compare
PS417_10645 -2.2 -5.6 magnesium ABC transporter ATPase compare
PS417_03260 -2.1 -1.6 5S ribosomal RNA compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_22565 -2.0 -0.7 formyltetrahydrofolate deformylase compare
PS417_08125 -2.0 -0.7 prephenate dehydratase compare
PS417_09590 -1.9 -4.6 membrane protein compare
PS417_03830 -1.9 -7.9 protein disaggregation chaperone compare
PS417_24600 -1.8 -7.6 hydrogenase compare
PS417_27425 -1.8 -6.5 exopolyphosphatase compare
PS417_26775 -1.8 -9.0 thiazole synthase compare
PS417_22445 -1.7 -2.1 ATP-dependent DNA helicase RuvB compare
PS417_24615 -1.6 -1.9 hypothetical protein compare
PS417_21425 -1.6 -2.0 4-amino-4-deoxychorismate lyase compare
PS417_09615 -1.5 -4.2 glycosyl transferase family 1 compare
PS417_03560 -1.5 -1.3 GTP-binding protein compare
PS417_09595 -1.4 -5.1 membrane protein compare
PS417_26530 -1.4 -1.8 hypothetical protein compare
PS417_09600 -1.4 -3.5 glycosyl transferase family 1 compare
PS417_21480 -1.4 -1.3 23S rRNA pseudouridylate synthase compare
PS417_27795 -1.4 -0.7 orotate phosphoribosyltransferase compare
PS417_16555 -1.4 -1.5 cupin compare
PS417_22450 -1.3 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_27245 -1.3 -2.3 aminotransferase DegT compare
PS417_24605 -1.3 -2.5 thiamine-phosphate pyrophosphorylase compare
PS417_26990 -1.3 -0.9 RNA pyrophosphohydrolase compare
PS417_23545 -1.3 -1.6 gamma-glutamyl kinase compare
PS417_02975 -1.3 -4.6 3-dehydroquinate dehydratase compare
PS417_27585 -1.3 -1.8 diaminopimelate epimerase compare
PS417_05695 -1.2 -4.0 transcriptional regulator compare
PS417_08410 -1.2 -1.9 hypothetical protein compare
PS417_20855 -1.2 -1.3 hypothetical protein compare
PS417_23385 -1.2 -4.7 cytochrome o ubiquinol oxidase subunit I compare
PS417_02270 -1.2 -3.1 carbamoyltransferase compare
PS417_04420 -1.2 -6.1 histidinol dehydrogenase compare
PS417_19095 -1.2 -2.0 hypothetical protein compare
PS417_21105 -1.2 -7.1 aminodeoxychorismate synthase compare
PS417_01575 -1.2 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_05865 -1.2 -2.5 hypothetical protein compare
PS417_00180 -1.2 -2.1 tryptophan synthase subunit alpha compare
PS417_21655 -1.1 -1.4 aspartate kinase compare
PS417_23900 -1.1 -6.6 poly(A) polymerase compare
PS417_22935 -1.1 -2.0 hypothetical protein compare
PS417_07615 -1.1 -4.5 TetR family transcriptional regulator compare
PS417_02485 -1.1 -2.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_25720 -1.1 -4.3 anthranilate synthase component II compare
PS417_23810 -1.1 -6.5 acetolactate synthase 3 catalytic subunit compare
PS417_01560 -1.1 -1.5 imidazoleglycerol-phosphate dehydratase compare
PS417_28070 -1.1 -4.7 phosphate ABC transporter ATP-binding protein compare
PS417_01620 -1.1 -3.0 preprotein translocase subunit SecB compare
PS417_07170 -1.1 -4.1 hypothetical protein compare
PS417_25710 -1.1 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_09585 -1.1 -4.9 acetyltransferase compare
PS417_05975 -1.0 -0.8 chemotaxis protein CheW compare
PS417_11705 -1.0 -5.3 cyclic peptide transporter compare
PS417_22895 -1.0 -4.0 tyrosine recombinase XerD compare
PS417_22575 -1.0 -6.4 exonuclease I compare
PS417_01915 -1.0 -0.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_15135 -1.0 -1.1 hypothetical protein compare
PS417_08170 -1.0 -5.6 capsular biosynthesis protein compare
PS417_01565 -1.0 -4.3 imidazole glycerol phosphate synthase compare
PS417_14805 -1.0 -2.1 AraC family transcriptional regulator compare
PS417_02255 -1.0 -1.5 lipopolysaccharide kinase compare
PS417_22535 -0.9 -4.6 ornithine acetyltransferase compare
PS417_18425 -0.9 -1.4 sporulation protein compare
PS417_04440 -0.9 -2.4 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_23580 -0.9 -1.4 peptidylprolyl isomerase compare
PS417_19425 -0.9 -1.1 allantoicase compare
PS417_25390 -0.9 -2.8 MFS transporter compare
PS417_05815 -0.9 -2.1 recombinase RecA compare
PS417_06500 -0.9 -1.7 hypothetical protein compare
PS417_27935 -0.9 -1.3 type VI secretion protein compare
PS417_06895 -0.9 -2.4 DNA-binding protein compare
PS417_10040 -0.9 -1.1 MFS transporter compare
PS417_10675 -0.9 -1.1 TetR family transcriptional regulator compare
PS417_16510 -0.9 -2.6 Clp protease ClpX compare
PS417_27110 -0.9 -3.0 spermidine/putrescine ABC transporter permease compare
PS417_27155 -0.9 -1.6 aliphatic sulfonates transport ATP-binding subunit compare
PS417_23805 -0.9 -3.2 acetolactate synthase 3 regulatory subunit compare
PS417_01850 -0.9 -2.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_07710 -0.9 -2.1 membrane protein compare
PS417_26695 -0.9 -1.4 uracil phosphoribosyltransferase compare
PS417_02280 -0.9 -0.9 GlcNAc-PI de-N-acetylase compare
PS417_08580 -0.9 -3.8 histidine kinase compare
PS417_00345 -0.9 -1.8 copper-binding protein compare
PS417_23825 -0.8 -3.7 penicillin-binding protein compare
PS417_00385 -0.8 -1.1 Fur family transcriptional regulator compare
PS417_22620 -0.8 -1.6 pyruvate kinase compare
PS417_02510 -0.8 -3.1 ATP phosphoribosyltransferase regulatory subunit compare
PS417_06685 -0.8 -0.8 beta-ketoadipyl CoA thiolase compare
PS417_27835 -0.8 -2.9 endoribonuclease compare
PS417_06200 -0.8 -2.9 protein-PII uridylyltransferase compare
PS417_02395 -0.8 -2.0 DNA topoisomerase IV subunit B compare
PS417_20985 -0.8 -0.5 porin compare
PS417_01290 -0.8 -1.6 ADP-ribose diphosphatase compare
PS417_25155 -0.8 -1.3 hypothetical protein compare
PS417_02865 -0.8 -2.7 peptidase compare
PS417_14065 -0.7 -3.7 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_08990 -0.7 -2.1 ABC transporter substrate-binding protein compare
PS417_25055 -0.7 -2.2 transposase compare
PS417_08540 -0.7 -1.6 RNA helicase compare
PS417_04410 -0.7 -1.5 hypothetical protein compare
PS417_10575 -0.7 -2.5 DNA alkylation repair protein compare
PS417_27605 -0.7 -4.4 hypothetical protein compare
PS417_23370 -0.7 -2.3 protoheme IX farnesyltransferase compare
PS417_26985 -0.7 -3.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_01430 -0.7 -2.1 chromosome segregation protein SMC compare
PS417_27315 -0.7 -1.0 hypothetical protein compare
PS417_07640 -0.7 -1.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_09210 -0.7 -1.0 TetR family transcriptional regulator compare
PS417_15285 -0.7 -0.9 type VI secretion protein compare
PS417_09620 -0.7 -4.4 lipopolysaccharide biosynthesis protein compare
PS417_04875 -0.7 -0.7 molybdenum cofactor biosynthesis protein MoaE compare
PS417_02880 -0.7 -1.0 copper chaperone compare
PS417_02950 -0.7 -1.7 tRNA-dihydrouridine synthase B compare
PS417_14940 -0.7 -1.3 LysR family transcriptional regulator compare
PS417_10480 -0.7 -1.7 glutathione S-transferase compare
PS417_14315 -0.7 -1.4 2,5-dioxovalerate dehydrogenase compare
PS417_02780 -0.7 -2.6 DNA-binding protein compare
PS417_06075 -0.7 -0.9 hypothetical protein compare
PS417_22400 -0.7 -4.2 7-cyano-7-deazaguanine synthase compare
PS417_07560 -0.7 -1.1 universal stress protein UspA compare
PS417_24675 -0.7 -1.0 lipoyl synthase compare
PS417_09625 -0.6 -2.5 sugar ABC transporter substrate-binding protein compare
PS417_23390 -0.6 -3.2 ubiquinol oxidase subunit II compare
PS417_02720 -0.6 -0.7 TetR family transcriptional regulator compare
PS417_01310 -0.6 -2.1 ATPase compare
PS417_04415 -0.6 -3.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_11400 -0.6 -1.1 phosphoglycerate mutase compare
PS417_01710 -0.6 -2.7 histidine utilization repressor compare
PS417_16720 -0.6 -0.9 membrane protein compare
PS417_08200 -0.6 -1.7 hypothetical protein compare
PS417_12805 -0.6 -4.5 glycogen branching protein compare
PS417_04180 -0.6 -2.5 GntR family transcriptional regulator compare
PS417_23375 -0.6 -1.3 cytochrome C oxidase compare
PS417_08665 -0.6 -2.7 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_26335 -0.6 -1.4 BetI family transcriptional regulator compare
PS417_20170 -0.6 -1.2 hypothetical protein compare
PS417_28080 -0.6 -4.5 phosphate ABC transporter permease compare
PS417_02990 -0.6 -2.0 hypothetical protein compare
PS417_19645 -0.6 -2.3 chemotaxis protein compare
PS417_12945 -0.6 -2.1 sulfonate ABC transporter ATP-binding protein compare
PS417_26995 -0.6 -3.1 phosphoserine phosphatase compare
PS417_14400 -0.6 -1.8 hypothetical protein compare
PS417_16750 -0.6 -0.9 ABC transporter ATP-binding protein compare
PS417_18435 -0.6 -0.9 hypothetical protein compare
PS417_21625 -0.6 -0.7 DNA-binding protein compare
PS417_03815 -0.6 -1.3 DNA transporter compare
PS417_02870 -0.6 -3.4 TonB-dependent receptor compare
PS417_23775 -0.6 -0.9 exodeoxyribonuclease V subunit beta compare
PS417_18600 -0.6 -2.2 isopropylmalate isomerase compare
PS417_16400 -0.6 -1.3 NAD(P)H-quinone oxidoreductase compare
PS417_27815 -0.6 -1.0 hypothetical protein compare
PS417_09830 -0.6 -2.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_26815 -0.6 -1.1 peptidase M16 compare
PS417_01300 -0.6 -2.4 thioesterase compare
PS417_08250 -0.6 -1.0 competence protein ComEA compare
PS417_24710 -0.6 -3.8 lipoprotein compare
PS417_28450 -0.6 -2.8 XRE family transcriptional regulator compare
PS417_21780 -0.6 -2.2 argininosuccinate lyase compare
PS417_13525 -0.6 -1.9 membrane protein compare
PS417_16045 -0.6 -2.0 acyl-CoA dehydrogenase compare
PS417_12060 -0.6 -2.5 xylitol ABC transporter, permease component (from data) compare
PS417_25825 -0.6 -1.2 sulfurtransferase compare
PS417_04595 -0.6 -1.1 cell division protein MraZ compare
PS417_17650 -0.5 -1.4 proteinase compare
PS417_28230 -0.5 -1.5 transcriptional regulator compare
PS417_06030 -0.5 -1.9 hypothetical protein compare
PS417_04390 -0.5 -1.1 toluene tolerance protein compare
PS417_23910 -0.5 -1.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_25905 -0.5 -1.9 AsnC family transcriptional regulator compare
PS417_00755 -0.5 -0.5 biofilm PGA synthesis protein PgaD compare
PS417_23710 -0.5 -2.4 Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) compare
PS417_12595 -0.5 -1.3 transcriptional regulator compare
PS417_22705 -0.5 -1.1 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_07305 -0.5 -1.1 3-beta hydroxysteroid dehydrogenase compare
PS417_09245 -0.5 -0.6 recombinase RdgC compare
PS417_08335 -0.5 -0.7 hypothetical protein compare
PS417_01605 -0.5 -0.5 phosphoglycerate mutase compare
PS417_06365 -0.5 -2.9 RNA polymerase sigma factor compare
PS417_09730 -0.5 -1.9 adenylylsulfate kinase compare
PS417_16695 -0.5 -2.4 hypothetical protein compare
PS417_00045 -0.5 -0.9 glycerol acyltransferase compare
PS417_22195 -0.5 -2.0 peptidase compare
PS417_08685 -0.5 -0.9 flagellar hook-length control protein FliK compare
PS417_22530 -0.5 -2.4 hypothetical protein compare
PS417_08650 -0.5 -1.0 transcriptional regulator compare
PS417_08225 -0.5 -1.6 acetolactate synthase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress 80% Methanol across organisms