Experiment set32S532 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 3 mM; solid stress

200 most detrimental genes:

  gene name fitness t score description  
PS417_19755 +1.2 4.5 flagellar motor switch protein FliM compare
PS417_22990 +1.2 3.1 iron dicitrate transport regulator FecR compare
PS417_04365 +1.1 0.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_00845 +1.0 1.9 transcriptional regulator compare
PS417_19825 +1.0 7.8 ATPase AAA compare
PS417_04650 +0.9 0.7 D-alanine--D-alanine ligase compare
PS417_19800 +0.9 2.7 flagellar motor switch protein FliG compare
PS417_03475 +0.9 2.4 type III secretion protein compare
PS417_11865 +0.9 1.5 xylose isomerase compare
PS417_22945 +0.9 1.7 phosphoribosylglycinamide formyltransferase compare
PS417_22520 +0.8 1.7 histidine kinase compare
PS417_03780 +0.8 3.1 general secretion pathway protein GspH compare
PS417_03045 +0.8 1.0 hypothetical protein compare
PS417_03385 +0.8 1.8 flavin reductase compare
PS417_19690 +0.8 1.8 histidine kinase compare
PS417_01965 +0.8 1.0 fimbriae biosynthesis protein compare
PS417_17670 +0.7 2.0 ABC transporter permease compare
PS417_26685 +0.7 3.2 hypothetical protein compare
PS417_03525 +0.7 1.8 hypothetical protein compare
PS417_01115 +0.7 2.0 serine acetyltransferase compare
PS417_03510 +0.7 2.9 type III secretion system negative regulatory protein RspV compare
PS417_23300 +0.7 3.4 hypothetical protein compare
PS417_15215 +0.7 1.5 protein activator of alkane oxidation PraA compare
PS417_17070 +0.7 1.2 RNA polymerase subunit sigma-24 compare
PS417_04380 +0.7 0.9 ABC transporter permease compare
PS417_18885 +0.7 1.3 GntR family transcriptional regulator compare
PS417_06845 +0.6 1.5 lipoprotein compare
PS417_16815 +0.6 1.7 acyl-CoA dehydrogenase compare
PS417_06245 +0.6 1.0 zinc metallopeptidase RseP compare
PS417_24355 +0.6 2.3 MFS transporter compare
PS417_08435 +0.6 1.7 pilus assembly protein PilZ compare
PS417_18755 +0.6 2.1 CrtK compare
PS417_17805 +0.6 1.0 microcin B17 processing protein McbC compare
PS417_28265 +0.6 2.7 pyridoxamine kinase compare
PS417_02980 +0.6 1.4 chemotaxis protein compare
PS417_17705 +0.6 2.5 LacI family transcriptional regulator compare
PS417_02440 +0.6 2.3 flagellar motor protein MotB compare
PS417_11825 +0.6 1.9 transcriptional regulator compare
PS417_13145 +0.6 1.6 50S ribosomal protein L21 compare
PS417_26900 +0.6 1.5 L-cystine transporter tcyP compare
PS417_21870 +0.6 1.3 glycerophosphodiester phosphodiesterase compare
PS417_23490 +0.6 1.2 dihydrofolate reductase compare
PS417_05100 +0.6 1.0 RNA polymerase sigma factor compare
PS417_18055 +0.6 1.2 general secretion pathway protein GspK compare
PS417_24225 +0.6 2.0 hypothetical protein compare
PS417_04290 +0.6 1.8 hypothetical protein compare
PS417_11950 +0.6 1.4 hypothetical protein compare
PS417_13255 +0.6 1.4 ABC transporter compare
PS417_00705 +0.6 1.6 MarR family transcriptional regulator compare
PS417_16825 +0.5 1.3 membrane protein compare
PS417_18165 +0.5 2.2 membrane protein compare
PS417_24620 +0.5 1.8 hypothetical protein compare
PS417_00030 +0.5 1.2 hypothetical protein compare
PS417_28275 +0.5 2.2 cobalamin biosynthesis protein CobW compare
PS417_14050 +0.5 2.1 recombinase compare
PS417_01405 +0.5 2.4 sugar transporter compare
PS417_12495 +0.5 2.2 hypothetical protein compare
PS417_06945 +0.5 0.9 membrane protein compare
PS417_11305 +0.5 2.2 general secretion pathway protein GspF compare
PS417_18490 +0.5 1.4 hypothetical protein compare
PS417_08385 +0.5 2.3 hypothetical protein compare
PS417_26370 +0.5 1.9 RNA helicase compare
PS417_05065 +0.5 1.6 hypothetical protein compare
PS417_17945 +0.5 0.7 hypothetical protein compare
PS417_15090 +0.5 0.6 hypothetical protein compare
PS417_16975 +0.5 1.7 GNAT family acetyltransferase compare
PS417_05365 +0.5 0.9 FAD-binding protein compare
PS417_24580 +0.5 2.3 pseudouridine synthase compare
PS417_03725 +0.5 1.7 acyltransferase compare
PS417_10245 +0.5 1.0 hypothetical protein compare
PS417_26220 +0.5 1.3 Rieske (2Fe-2S) protein compare
PS417_26445 +0.5 2.0 ArsR family transcriptional regulator compare
PS417_10370 +0.5 1.3 ATPase compare
PS417_01685 +0.5 1.1 membrane protein compare
PS417_00975 +0.5 1.2 hypothetical protein compare
PS417_19740 +0.5 4.3 flagellar biosynthesis protein flip compare
PS417_14505 +0.5 2.4 glycogen debranching protein compare
PS417_12455 +0.5 0.9 hydrolase compare
PS417_02820 +0.5 1.5 urea ABC transporter ATP-binding protein compare
PS417_27875 +0.5 2.9 histidine kinase compare
PS417_20115 +0.5 1.7 hypothetical protein compare
PS417_24180 +0.5 4.4 hypothetical protein compare
PS417_02360 +0.5 2.1 nitrate reductase compare
PS417_01590 +0.5 1.3 polysaccharide deacetylase compare
PS417_19625 +0.5 1.9 histidine kinase compare
PS417_24275 +0.5 4.3 diguanylate phosphodiesterase compare
PS417_00065 +0.5 1.1 3-methyladenine DNA glycosylase compare
PS417_21185 +0.5 1.3 hypothetical protein compare
PS417_00130 +0.5 2.1 SulP family inorganic anion transporter compare
PS417_01900 +0.5 1.9 poly(3-hydroxyalkanoate) depolymerase compare
PS417_14140 +0.5 1.4 membrane protein compare
PS417_05445 +0.5 1.1 DNA mismatch repair protein MutT compare
PS417_24175 +0.5 3.4 hypothetical protein compare
PS417_23855 +0.5 1.4 ABC transporter substrate-binding protein compare
PS417_21585 +0.5 2.6 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_09470 +0.5 1.0 hypothetical protein compare
PS417_14430 +0.5 1.2 AraC family transcriptional regulator compare
PS417_24170 +0.5 4.3 cell division protein FtsK compare
PS417_17780 +0.5 0.9 Ais protein compare
PS417_04010 +0.5 2.3 glycine/betaine ABC transporter ATP-binding protein compare
PS417_13735 +0.4 1.0 hypothetical protein compare
PS417_14565 +0.4 2.1 chemotaxis protein compare
PS417_06565 +0.4 1.2 short-chain dehydrogenase compare
PS417_18965 +0.4 2.2 dienelactone hydrolase compare
PS417_21555 +0.4 3.0 flagellar hook protein FlgE compare
PS417_20705 +0.4 1.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_24370 +0.4 0.6 (2Fe-2S)-binding protein compare
PS417_12105 +0.4 2.6 ABC transporter permease compare
PS417_11785 +0.4 2.2 glutamine synthetase compare
PS417_15480 +0.4 0.7 ABC transporter substrate-binding protein compare
PS417_07245 +0.4 1.2 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_11340 +0.4 2.1 prevent-host-death protein compare
PS417_07440 +0.4 1.9 cyclic nucleotide-binding protein compare
PS417_12740 +0.4 1.5 secretion protein HlyD compare
PS417_21375 +0.4 1.3 ADP-ribosylglycohydrolase compare
PS417_21755 +0.4 1.9 hypothetical protein compare
PS417_03360 +0.4 1.7 histidine kinase compare
PS417_23505 +0.4 0.8 cell division protein DedD compare
PS417_12490 +0.4 1.1 autotransporter adhesin compare
PS417_14840 +0.4 1.7 abortive phage infection protein compare
PS417_27205 +0.4 1.3 adenylate cyclase compare
PS417_19870 +0.4 2.2 flagellar rod assembly protein FlgJ compare
PS417_19695 +0.4 2.7 flagellar biosynthesis sigma factor compare
PS417_11945 +0.4 1.6 hypothetical protein compare
PS417_00380 +0.4 0.9 zinc ABC transporter ATP-binding protein compare
PS417_19710 +0.4 2.6 flagellar biosynthesis protein FlhA compare
PS417_14995 +0.4 1.9 serine/threonine protein kinase compare
PS417_19745 +0.4 3.6 flagellar assembly protein FliO compare
PS417_00455 +0.4 0.9 hypothetical protein compare
PS417_11900 +0.4 3.0 conjugal transfer protein TraR compare
PS417_18150 +0.4 1.9 chemotaxis protein CheY compare
PS417_15695 +0.4 1.6 molybdenum cofactor biosynthesis protein A compare
PS417_18130 +0.4 2.1 ABC transporter substrate-binding protein compare
PS417_06745 +0.4 0.9 polysaccharide deacetylase compare
PS417_26400 +0.4 1.9 metal-dependent hydrolase compare
PS417_09220 +0.4 2.2 cupin compare
PS417_24430 +0.4 1.0 3-dehydroquinate dehydratase compare
PS417_17405 +0.4 1.4 AraC family transcriptional regulator compare
PS417_01825 +0.4 1.1 chemotaxis protein compare
PS417_03470 +0.4 1.7 ATP synthase compare
PS417_13605 +0.4 2.6 short-chain dehydrogenase compare
PS417_06710 +0.4 1.1 beta-ketoadipyl CoA thiolase compare
PS417_01410 +0.4 2.7 transporter compare
PS417_03630 +0.4 1.5 hypothetical protein compare
PS417_24560 +0.4 1.6 ferrous iron transporter compare
PS417_10535 +0.4 1.1 hypothetical protein compare
PS417_12195 +0.4 2.6 ABC transporter permease compare
PS417_00565 +0.4 1.7 NAD(P) transhydrogenase compare
PS417_05010 +0.4 1.1 IclR family transcriptional regulator compare
PS417_10055 +0.4 1.3 hypothetical protein compare
PS417_13065 +0.4 1.5 UDP pyrophosphate phosphatase compare
PS417_00810 +0.4 1.7 RNA polymerase sigma factor compare
PS417_11075 +0.4 1.0 hydroxypyruvate isomerase compare
PS417_21855 +0.4 0.9 hypothetical protein compare
PS417_04055 +0.4 2.1 peptide transporter compare
PS417_02560 +0.4 0.7 23S rRNA methyltransferase compare
PS417_15410 +0.4 1.5 hypothetical protein compare
PS417_07655 +0.4 1.2 glycerophosphodiester phosphodiesterase compare
PS417_06280 +0.4 1.3 ribonuclease HII compare
PS417_03395 +0.4 2.4 lysine transporter LysE compare
PS417_24495 +0.4 1.8 NAD(FAD)-utilizing dehydrogenase compare
PS417_22810 +0.4 0.7 DNA base-flipping protein YbaZ compare
PS417_07870 +0.4 1.3 hypothetical protein compare
PS417_13305 +0.4 0.9 hypothetical protein compare
PS417_17610 +0.4 1.0 AsnC family transcriptional regulator compare
PS417_15065 +0.4 0.8 GntR family transcriptional regulator compare
PS417_26175 +0.4 0.6 sarcosine oxidase subunit gamma compare
PS417_20620 +0.4 1.6 glycosyl transferase family 2 compare
PS417_12520 +0.4 1.1 hypothetical protein compare
PS417_11870 +0.4 2.6 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) compare
PS417_05765 +0.4 2.3 hypothetical protein compare
PS417_11185 +0.4 1.3 dimethylallyltransferase compare
PS417_11640 +0.4 1.1 GntR family transcriptional regulator compare
PS417_18360 +0.4 1.5 hypothetical protein compare
PS417_21175 +0.4 2.2 hypothetical protein compare
PS417_08545 +0.4 1.2 aromatic ring-opening dioxygenase LigB compare
PS417_05900 +0.4 1.0 TetR family transcriptional regulator compare
PS417_22375 +0.4 0.6 cold-shock protein compare
PS417_05955 +0.4 1.6 hypothetical protein compare
PS417_21240 +0.4 1.9 hypothetical protein compare
PS417_23135 +0.4 1.0 GTP-binding protein compare
PS417_02760 +0.4 1.3 AraC family transcriptional regulator compare
PS417_17345 +0.4 1.8 hypothetical protein compare
PS417_19370 +0.4 2.0 citrate transporter compare
PS417_23325 +0.4 2.1 histidine kinase compare
PS417_25035 +0.4 1.8 hypothetical protein compare
PS417_22630 +0.4 1.0 hypothetical protein compare
PS417_17350 +0.4 1.0 copper resistance protein CopD compare
PS417_00100 +0.4 2.3 peptidoglycan-binding protein compare
PS417_09935 +0.4 1.7 hypothetical protein compare
PS417_27035 +0.4 1.3 FAD-linked oxidase compare
PS417_02675 +0.4 1.4 ABC transporter ATP-binding protein compare
PS417_19795 +0.4 2.5 flagellar assembly protein FliH compare
PS417_18025 +0.4 0.9 cytochrome C compare
PS417_15935 +0.3 0.8 Rrf2 family transcriptional regulator compare
PS417_22715 +0.3 1.4 heme oxygenase compare
PS417_09030 +0.3 2.2 alpha/beta hydrolase compare
PS417_07130 +0.3 2.1 RNA polymerase sigma-H factor AlgU compare
PS417_20825 +0.3 1.3 drug:proton antiporter compare
PS417_27955 +0.3 2.3 EvpB family type VI secretion protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress 80% Methanol across organisms