Experiment set32S528 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 3 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_27865 -6.4 -4.3 LysR family transcriptional regulator compare
PS417_28070 -5.4 -8.1 phosphate ABC transporter ATP-binding protein compare
PS417_00665 -5.4 -7.7 RND transporter compare
PS417_00650 -4.9 -1.8 LysR family transcriptional regulator compare
PS417_00660 -4.8 -4.7 DSBA oxidoreductase compare
PS417_14045 -4.7 -6.4 alkyl hydroperoxide reductase compare
PS417_06770 -4.4 -8.1 multidrug transporter compare
PS417_06775 -4.3 -5.8 antibiotic transporter compare
PS417_28080 -4.2 -13.5 phosphate ABC transporter permease compare
PS417_07615 -4.0 -7.2 TetR family transcriptional regulator compare
PS417_28085 -3.9 -11.3 phosphate-binding protein compare
PS417_27835 -3.7 -8.9 endoribonuclease compare
PS417_05590 -3.7 -9.5 iron ABC transporter ATP-binding protein compare
PS417_10645 -3.6 -11.2 magnesium ABC transporter ATPase compare
PS417_00655 -3.5 -5.1 DSBA oxidoreductase compare
PS417_28050 -3.3 -2.9 hypothetical protein compare
PS417_21430 -3.2 -2.2 3-oxoacyl-ACP synthase compare
PS417_27795 -3.1 -1.1 orotate phosphoribosyltransferase compare
PS417_23545 -3.1 -3.2 gamma-glutamyl kinase compare
PS417_23385 -3.1 -7.5 cytochrome o ubiquinol oxidase subunit I compare
PS417_02255 -3.1 -5.2 lipopolysaccharide kinase compare
PS417_06680 -3.0 -5.5 nuclease PIN compare
PS417_26985 -3.0 -3.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_23380 -2.9 -3.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_23375 -2.8 -2.5 cytochrome C oxidase compare
PS417_01915 -2.7 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_22735 -2.6 -11.5 thiol oxidoreductase compare
PS417_17215 -2.5 -2.6 peptidylprolyl isomerase compare
PS417_18310 -2.5 -1.5 hypothetical protein compare
PS417_22195 -2.4 -3.9 peptidase compare
PS417_27605 -2.4 -7.4 hypothetical protein compare
PS417_05365 -2.3 -2.6 FAD-binding protein compare
PS417_28075 -2.3 -3.7 phosphate ABC transporter permease compare
PS417_02555 -2.3 -11.9 exoribonuclease R compare
PS417_26990 -2.3 -1.2 RNA pyrophosphohydrolase compare
PS417_10720 -2.2 -6.5 chemotaxis protein CheY compare
PS417_04385 -2.2 -2.2 organic solvent ABC transporter substrate-binding protein compare
PS417_02270 -2.2 -3.5 carbamoyltransferase compare
PS417_27870 -2.2 -2.5 ATP-dependent DNA helicase RecG compare
PS417_14065 -2.2 -11.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_23915 -2.2 -3.2 pantoate--beta-alanine ligase compare
PS417_16360 -2.2 -5.2 histidine kinase compare
PS417_03990 -2.2 -11.9 ligand-gated channel protein compare
PS417_01955 -2.1 -9.7 peptidase compare
PS417_23390 -2.1 -4.3 ubiquinol oxidase subunit II compare
PS417_07170 -2.1 -5.0 hypothetical protein compare
PS417_16370 -2.1 -8.6 chemotaxis protein CheY compare
PS417_12750 -2.0 -7.0 acriflavine resistance protein B compare
PS417_21625 -2.0 -1.4 DNA-binding protein compare
PS417_20855 -1.9 -1.6 hypothetical protein compare
PS417_18545 -1.9 -3.1 cell division protein compare
PS417_06375 -1.8 -0.7 deoxycytidine triphosphate deaminase compare
PS417_22565 -1.8 -0.7 formyltetrahydrofolate deformylase compare
PS417_27640 -1.8 -1.6 TetR family transcriptional regulator compare
PS417_06365 -1.8 -6.9 RNA polymerase sigma factor compare
PS417_12745 -1.8 -7.0 multidrug transporter compare
PS417_00345 -1.7 -2.4 copper-binding protein compare
PS417_07140 -1.7 -2.1 peptidase M48 compare
PS417_05210 -1.7 -5.9 copper oxidase compare
PS417_07710 -1.7 -2.6 membrane protein compare
PS417_24615 -1.7 -1.8 hypothetical protein compare
PS417_27610 -1.7 -9.3 hypothetical protein compare
PS417_03830 -1.7 -6.8 protein disaggregation chaperone compare
PS417_05595 -1.6 -5.7 ornithine carbamoyltransferase compare
PS417_01185 -1.6 -4.1 ribosomal protein S6 modification protein compare
PS417_13620 -1.6 -2.2 thermostable hemolysin compare
PS417_06205 -1.6 -7.7 methionine aminopeptidase compare
PS417_01920 -1.6 -1.1 ATP-dependent protease subunit HslV compare
PS417_01795 -1.5 -11.0 glucosyltransferase MdoH compare
PS417_04365 -1.5 -1.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_18355 -1.5 -5.8 DNA-binding protein compare
PS417_01560 -1.5 -2.7 imidazoleglycerol-phosphate dehydratase compare
PS417_24385 -1.5 -4.3 tRNA (uracil-5-)-methyltransferase compare
PS417_09600 -1.5 -4.9 glycosyl transferase family 1 compare
PS417_02485 -1.5 -2.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_25710 -1.5 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_04000 -1.5 -8.2 hypothetical protein compare
PS417_23135 -1.4 -2.1 GTP-binding protein compare
PS417_01600 -1.4 -4.4 peptidase M23 compare
PS417_22935 -1.4 -2.5 hypothetical protein compare
PS417_09590 -1.4 -4.3 membrane protein compare
PS417_03985 -1.4 -7.8 flavodoxin compare
PS417_04390 -1.4 -3.2 toluene tolerance protein compare
PS417_19705 -1.4 -2.7 flagellar biosynthesis regulator FlhF compare
PS417_07470 -1.4 -1.3 hypothetical protein compare
PS417_26770 -1.4 -2.0 tRNA (guanine-N7)-methyltransferase compare
PS417_12755 -1.4 -2.9 RND transporter compare
PS417_22400 -1.3 -6.7 7-cyano-7-deazaguanine synthase compare
PS417_07695 -1.3 -4.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_15090 -1.3 -2.2 hypothetical protein compare
PS417_01565 -1.3 -4.9 imidazole glycerol phosphate synthase compare
PS417_05975 -1.3 -0.8 chemotaxis protein CheW compare
PS417_17035 -1.3 -1.4 Cro/Cl family transcriptional regulator compare
PS417_24800 -1.3 -5.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_15075 -1.3 -7.7 NAD-glutamate dehydrogenase compare
PS417_03995 -1.3 -3.6 Fe(II)-dependent oxygenase compare
PS417_27300 -1.3 -0.9 cell division protein ZapA compare
PS417_22405 -1.3 -4.9 7-carboxy-7-deazaguanine synthase compare
PS417_01945 -1.3 -3.1 nuclease compare
PS417_15105 -1.2 -3.8 membrane protein compare
PS417_01575 -1.2 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_25320 -1.2 -8.9 dTDP-4-dehydrorhamnose reductase compare
PS417_06530 -1.2 -2.2 membrane protein compare
PS417_06730 -1.2 -1.8 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_27295 -1.2 -3.5 hypothetical protein compare
PS417_24710 -1.2 -6.5 lipoprotein compare
PS417_04380 -1.2 -0.9 ABC transporter permease compare
PS417_09630 -1.2 -4.5 glycosyl transferase compare
PS417_00370 -1.2 -1.0 hypothetical protein compare
PS417_12355 -1.2 -2.3 magnesium chelatase compare
PS417_27705 -1.2 -1.7 amino acid dehydrogenase compare
PS417_07165 -1.2 -3.3 dihydrodipicolinate synthase compare
PS417_16510 -1.2 -4.3 Clp protease ClpX compare
PS417_24780 -1.2 -7.8 peptidase C13 compare
PS417_03300 -1.1 -1.6 alanine acetyltransferase compare
PS417_15805 -1.1 -1.7 transporter compare
PS417_22825 -1.1 -3.3 hypothetical protein compare
PS417_24605 -1.1 -2.5 thiamine-phosphate pyrophosphorylase compare
PS417_16560 -1.1 -2.2 GNAT family acetyltransferase compare
PS417_19415 -1.1 -3.4 allantoinase compare
PS417_26805 -1.1 -1.1 cell division protein FtsE compare
PS417_12310 -1.1 -4.9 methionine synthase compare
PS417_22065 -1.1 -4.4 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_04590 -1.1 -2.7 methyltransferase compare
PS417_02525 -1.1 -7.3 iron ABC transporter permease compare
PS417_12695 -1.1 -3.8 mannitol dehydrogenase compare
PS417_24415 -1.1 -4.2 siderophore-interacting protein compare
PS417_22450 -1.1 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_19995 -1.0 -4.9 Long-chain fatty acid transport protein compare
PS417_21210 -1.0 -2.0 amidotransferase compare
PS417_04420 -1.0 -5.3 histidinol dehydrogenase compare
PS417_09830 -1.0 -3.8 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_19425 -1.0 -1.0 allantoicase compare
PS417_23995 -1.0 -0.8 preprotein translocase subunit SecG compare
PS417_22575 -1.0 -5.1 exonuclease I compare
PS417_22115 -1.0 -2.1 transcriptional regulator compare
PS417_01790 -1.0 -4.3 glucan biosynthesis protein G compare
PS417_27535 -1.0 -5.1 chemotaxis protein CheY compare
PS417_02510 -1.0 -2.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_09615 -1.0 -3.1 glycosyl transferase family 1 compare
PS417_05885 -1.0 -4.4 potassium transporter Kup compare
PS417_28350 -1.0 -4.7 fatty acid methyltransferase compare
PS417_15085 -1.0 -2.3 ATPase AAA compare
PS417_12740 -1.0 -1.4 secretion protein HlyD compare
PS417_22740 -1.0 -4.8 imelysin compare
PS417_18690 -1.0 -2.4 aromatic amino acid aminotransferase compare
PS417_23250 -1.0 -3.3 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_24705 -1.0 -2.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_26775 -1.0 -4.5 thiazole synthase compare
PS417_01875 -1.0 -2.2 polyhydroxyalkanoic acid system protein compare
PS417_16490 -1.0 -1.0 cell division protein FtsK compare
PS417_23820 -1.0 -3.5 hypothetical protein compare
PS417_26730 -1.0 -0.6 pyrroline-5-carboxylate reductase compare
PS417_23825 -1.0 -4.4 penicillin-binding protein compare
PS417_01855 -1.0 -1.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_26500 -1.0 -3.1 thioesterase compare
PS417_08540 -0.9 -1.7 RNA helicase compare
PS417_12500 -0.9 -6.6 peptide ABC transporter substrate-binding protein compare
PS417_25765 -0.9 -1.9 transcriptional regulator compare
PS417_03145 -0.9 -1.3 acetyl-CoA acetyltransferase compare
PS417_07575 -0.9 -2.6 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_00045 -0.9 -1.4 glycerol acyltransferase compare
PS417_07940 -0.9 -2.5 hypothetical protein compare
PS417_21105 -0.9 -4.8 aminodeoxychorismate synthase compare
PS417_09620 -0.9 -5.8 lipopolysaccharide biosynthesis protein compare
PS417_27315 -0.9 -0.8 hypothetical protein compare
PS417_24265 -0.9 -4.3 ABC transporter ATP-binding protein compare
PS417_24585 -0.9 -6.3 AMP nucleosidase compare
PS417_28265 -0.9 -1.1 pyridoxamine kinase compare
PS417_02530 -0.9 -4.9 iron ABC transporter substrate-binding protein compare
PS417_04415 -0.9 -4.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_26755 -0.9 -1.0 nucleoside-triphosphate diphosphatase compare
PS417_09595 -0.9 -3.0 membrane protein compare
PS417_08155 -0.9 -0.8 integration host factor subunit beta compare
PS417_08350 -0.9 -2.4 preprotein translocase subunit TatD compare
PS417_15800 -0.9 -3.0 photosynthetic protein synthase I compare
PS417_13525 -0.9 -1.9 membrane protein compare
PS417_02460 -0.9 -4.6 epoxyqueuosine reductase compare
PS417_23880 -0.9 -3.7 glutamyl-Q tRNA(Asp) ligase compare
PS417_22745 -0.8 -3.6 hypothetical protein compare
PS417_15970 -0.8 -3.7 hypothetical protein compare
PS417_13640 -0.8 -2.1 ribose ABC transporter permease compare
PS417_20130 -0.8 -4.7 dehydrogenase compare
PS417_21480 -0.8 -0.7 23S rRNA pseudouridylate synthase compare
PS417_10425 -0.8 -1.5 hypothetical protein compare
PS417_25720 -0.8 -3.8 anthranilate synthase component II compare
PS417_17190 -0.8 -2.0 MarR family transcriptional regulator compare
PS417_26800 -0.8 -3.7 cell division protein FtsX compare
PS417_12595 -0.8 -1.6 transcriptional regulator compare
PS417_02975 -0.8 -2.4 3-dehydroquinate dehydratase compare
PS417_23370 -0.8 -2.9 protoheme IX farnesyltransferase compare
PS417_01850 -0.8 -2.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_21740 -0.8 -3.9 ABC transporter for L-Arginine, permease component 1 (from data) compare
PS417_22570 -0.8 -0.7 H-NS histone compare
PS417_15770 -0.8 -1.1 pyridoxine 5'-phosphate oxidase compare
PS417_22170 -0.8 -1.7 acetyltransferase compare
PS417_05105 -0.8 -3.1 membrane protein compare
PS417_10265 -0.8 -2.5 peptidase compare
PS417_09625 -0.8 -2.8 sugar ABC transporter substrate-binding protein compare
PS417_07515 -0.8 -5.9 aconitate hydratase compare


Specific Phenotypes

For 19 genes in this experiment

For liquid stress Fraxetin in Pseudomonas simiae WCS417

For liquid stress Fraxetin across organisms