Experiment set32S528 for Pseudomonas simiae WCS417
Fraxetin 3 mM; liquid stress
Group: liquid stressMedia: + Fraxetin (3 mM)
Culturing: fluoroDangl_ML3b
By: Max Stassen on 29-Mar-24
Specific Phenotypes
For 19 genes in this experiment
For liquid stress Fraxetin in Pseudomonas simiae WCS417
For liquid stress Fraxetin across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Lipopolysaccharide biosynthesis
- Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
- Sphingolipid metabolism
- Fructose and mannose metabolism
- Puromycin biosynthesis
- Lysine biosynthesis
- Glutathione metabolism
- N-Glycan biosynthesis
- O-Glycan biosynthesis
- High-mannose type N-glycan biosynthesis
- O-Mannosyl glycan biosynthesis
- Nucleotide sugars metabolism
- Keratan sulfate biosynthesis
- Peptidoglycan biosynthesis
- Glycerolipid metabolism
- Glycosphingolipid biosynthesis - lacto and neolacto series
- Glycosphingolipid biosynthesis - globo series
- Glycosphingolipid biosynthesis - ganglio series
- 1,4-Dichlorobenzene degradation
- Nicotinate and nicotinamide metabolism
- Carotenoid biosynthesis - General
- Zeatin biosynthesis
- Sulfur metabolism
- Caprolactam degradation
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Flavone and flavonol biosynthesis
- Drug metabolism - other enzymes
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| assimilatory sulfate reduction III | 3 | 3 | 1 |
| assimilatory sulfate reduction I | 4 | 4 | 1 |
| superpathway of sulfate assimilation and cysteine biosynthesis | 9 | 9 | 1 |
| superpathway of sulfur amino acid biosynthesis (Saccharomyces cerevisiae) | 10 | 7 | 1 |
| superpathway of L-methionine biosynthesis (by sulfhydrylation) | 12 | 12 | 1 |