Experiment set32S527 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 2 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_27865 -5.2 -3.6 LysR family transcriptional regulator compare
PS417_23915 -4.2 -2.9 pantoate--beta-alanine ligase compare
PS417_23950 -3.5 -2.4 polynucleotide phosphorylase/polyadenylase compare
PS417_05975 -3.2 -1.4 chemotaxis protein CheW compare
PS417_02280 -3.2 -2.2 GlcNAc-PI de-N-acetylase compare
PS417_16490 -2.5 -1.4 cell division protein FtsK compare
PS417_16555 -2.5 -1.7 cupin compare
PS417_27795 -2.4 -1.0 orotate phosphoribosyltransferase compare
PS417_17070 -2.2 -2.1 RNA polymerase subunit sigma-24 compare
PS417_05120 -2.2 -2.6 RNA polymerase subunit sigma-24 compare
PS417_26850 -2.1 -1.3 twin-arginine translocation pathway signal protein compare
PS417_24705 -2.1 -2.8 D-alanyl-D-alanine carboxypeptidase compare
PS417_28050 -2.0 -1.6 hypothetical protein compare
PS417_27870 -2.0 -1.9 ATP-dependent DNA helicase RecG compare
PS417_27195 -2.0 -1.6 N-acetylglutamate synthase compare
PS417_21430 -2.0 -1.3 3-oxoacyl-ACP synthase compare
PS417_00920 -1.9 -5.8 diguanylate cyclase compare
PS417_24600 -1.9 -4.3 hydrogenase compare
PS417_00655 -1.8 -4.9 DSBA oxidoreductase compare
PS417_06680 -1.8 -3.3 nuclease PIN compare
PS417_27300 -1.8 -1.1 cell division protein ZapA compare
PS417_06775 -1.8 -4.8 antibiotic transporter compare
PS417_19720 -1.8 -1.4 DNA-binding protein compare
PS417_01920 -1.8 -0.9 ATP-dependent protease subunit HslV compare
PS417_08540 -1.7 -2.2 RNA helicase compare
PS417_18545 -1.7 -1.6 cell division protein compare
PS417_07615 -1.7 -5.0 TetR family transcriptional regulator compare
PS417_03875 -1.7 -1.7 membrane protein compare
PS417_24525 -1.7 -2.3 nuclease compare
PS417_05365 -1.6 -2.2 FAD-binding protein compare
PS417_12355 -1.6 -2.2 magnesium chelatase compare
PS417_04385 -1.6 -1.6 organic solvent ABC transporter substrate-binding protein compare
PS417_27835 -1.6 -6.2 endoribonuclease compare
PS417_00665 -1.6 -6.5 RND transporter compare
PS417_09245 -1.6 -1.3 recombinase RdgC compare
PS417_04390 -1.6 -2.5 toluene tolerance protein compare
PS417_20855 -1.6 -1.4 hypothetical protein compare
PS417_10645 -1.5 -4.2 magnesium ABC transporter ATPase compare
PS417_27490 -1.5 -2.1 hypothetical protein compare
PS417_23380 -1.5 -2.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_00650 -1.5 -1.1 LysR family transcriptional regulator compare
PS417_06770 -1.5 -4.2 multidrug transporter compare
PS417_02475 -1.4 -1.9 N-acetylmuramoyl-L-alanine amidase compare
PS417_19350 -1.4 -3.6 GTP cyclohydrolase compare
PS417_26775 -1.4 -7.8 thiazole synthase compare
PS417_26985 -1.4 -4.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_14045 -1.4 -3.8 alkyl hydroperoxide reductase compare
PS417_24745 -1.4 -1.9 gamma-glutamyl phosphate reductase compare
PS417_06365 -1.4 -6.3 RNA polymerase sigma factor compare
PS417_26815 -1.4 -2.3 peptidase M16 compare
PS417_19995 -1.4 -6.2 Long-chain fatty acid transport protein compare
PS417_02270 -1.3 -2.8 carbamoyltransferase compare
PS417_05325 -1.3 -1.6 fimbrial protein compare
PS417_01270 -1.3 -2.0 iron ABC transporter substrate-binding protein compare
PS417_23210 -1.3 -1.8 serine acetyltransferase compare
PS417_05595 -1.3 -5.5 ornithine carbamoyltransferase compare
PS417_04050 -1.3 -1.4 peptide ABC transporter ATP-binding protein compare
PS417_05985 -1.3 -2.1 chemotaxis protein CheY compare
PS417_01575 -1.3 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02225 -1.3 -2.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_24710 -1.3 -5.1 lipoprotein compare
PS417_27605 -1.3 -4.9 hypothetical protein compare
PS417_08365 -1.3 -1.1 hypothetical protein compare
PS417_18310 -1.2 -0.8 hypothetical protein compare
PS417_24605 -1.2 -1.5 thiamine-phosphate pyrophosphorylase compare
PS417_16370 -1.2 -5.4 chemotaxis protein CheY compare
PS417_10405 -1.2 -1.1 filamentous hemagglutinin compare
PS417_22530 -1.2 -2.1 hypothetical protein compare
PS417_13620 -1.2 -1.5 thermostable hemolysin compare
PS417_04475 -1.2 -2.9 hypothetical protein compare
PS417_23385 -1.2 -3.5 cytochrome o ubiquinol oxidase subunit I compare
PS417_05535 -1.2 -1.0 Fis family transcriptional regulator compare
PS417_06375 -1.2 -0.5 deoxycytidine triphosphate deaminase compare
PS417_08125 -1.1 -0.5 prephenate dehydratase compare
PS417_22565 -1.1 -0.5 formyltetrahydrofolate deformylase compare
PS417_26605 -1.1 -0.9 malonate decarboxylase subunit beta compare
PS417_09630 -1.1 -3.5 glycosyl transferase compare
PS417_09590 -1.1 -2.3 membrane protein compare
PS417_13075 -1.1 -1.1 hypothetical protein compare
PS417_01855 -1.1 -1.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_22840 -1.1 -1.0 tRNA-Met compare
PS417_27585 -1.1 -1.5 diaminopimelate epimerase compare
PS417_25710 -1.1 -1.4 indole-3-glycerol-phosphate synthase compare
PS417_00370 -1.1 -0.9 hypothetical protein compare
PS417_19415 -1.1 -2.3 allantoinase compare
PS417_19160 -1.1 -3.6 hypothetical protein compare
PS417_23995 -1.1 -0.8 preprotein translocase subunit SecG compare
PS417_15975 -1.0 -0.9 glutamate carboxypeptidase compare
PS417_01565 -1.0 -3.8 imidazole glycerol phosphate synthase compare
PS417_04380 -1.0 -0.7 ABC transporter permease compare
PS417_20880 -1.0 -2.2 GntR family transcriptional regulator compare
PS417_09605 -1.0 -1.6 glycosyl transferase compare
PS417_00345 -1.0 -1.6 copper-binding protein compare
PS417_10600 -1.0 -1.6 hypothetical protein compare
PS417_28070 -1.0 -4.4 phosphate ABC transporter ATP-binding protein compare
PS417_02915 -1.0 -2.5 precorrin-3B C17-methyltransferase compare
PS417_02975 -1.0 -3.0 3-dehydroquinate dehydratase compare
PS417_20705 -1.0 -1.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_17405 -1.0 -0.8 AraC family transcriptional regulator compare
PS417_08230 -1.0 -1.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_06100 -1.0 -1.4 SAM-dependent methyltransferase compare
PS417_08410 -0.9 -1.6 hypothetical protein compare
PS417_02555 -0.9 -5.1 exoribonuclease R compare
PS417_04595 -0.9 -1.3 cell division protein MraZ compare
PS417_11810 -0.9 -2.2 oxidoreductase compare
PS417_22400 -0.9 -4.9 7-cyano-7-deazaguanine synthase compare
PS417_27705 -0.9 -1.3 amino acid dehydrogenase compare
PS417_04420 -0.9 -3.6 histidinol dehydrogenase compare
PS417_06635 -0.9 -0.9 ferredoxin compare
PS417_00660 -0.9 -1.8 DSBA oxidoreductase compare
PS417_01130 -0.9 -2.0 L-glyceraldehyde 3-phosphate reductase compare
PS417_27815 -0.9 -0.6 hypothetical protein compare
PS417_18915 -0.9 -1.6 hypothetical protein compare
PS417_04170 -0.9 -2.7 stringent starvation protein A compare
PS417_27425 -0.9 -3.7 exopolyphosphatase compare
PS417_03995 -0.9 -1.5 Fe(II)-dependent oxygenase compare
PS417_10265 -0.9 -2.2 peptidase compare
PS417_17755 -0.9 -2.2 hypothetical protein compare
PS417_22570 -0.9 -0.6 H-NS histone compare
PS417_28085 -0.9 -4.9 phosphate-binding protein compare
PS417_10550 -0.9 -3.1 DNA topoisomerase III compare
PS417_24460 -0.9 -1.3 hypothetical protein compare
PS417_17215 -0.9 -1.5 peptidylprolyl isomerase compare
PS417_28510 -0.9 -3.3 chromosome partitioning protein compare
PS417_04055 -0.9 -3.1 peptide transporter compare
PS417_11950 -0.9 -1.1 hypothetical protein compare
PS417_22170 -0.9 -1.6 acetyltransferase compare
PS417_25320 -0.9 -5.8 dTDP-4-dehydrorhamnose reductase compare
PS417_22195 -0.8 -2.7 peptidase compare
PS417_23825 -0.8 -3.2 penicillin-binding protein compare
PS417_01965 -0.8 -0.9 fimbriae biosynthesis protein compare
PS417_05590 -0.8 -4.2 iron ABC transporter ATP-binding protein compare
PS417_12005 -0.8 -1.7 hypothetical protein compare
PS417_01590 -0.8 -1.5 polysaccharide deacetylase compare
PS417_08335 -0.8 -1.0 hypothetical protein compare
PS417_26695 -0.8 -1.0 uracil phosphoribosyltransferase compare
PS417_18930 -0.8 -1.3 restriction endonuclease subunit S compare
PS417_23375 -0.8 -1.2 cytochrome C oxidase compare
PS417_25720 -0.8 -4.0 anthranilate synthase component II compare
PS417_27315 -0.8 -1.0 hypothetical protein compare
PS417_15110 -0.8 -2.4 protein BatD compare
PS417_01290 -0.8 -1.4 ADP-ribose diphosphatase compare
PS417_28185 -0.8 -2.2 homocysteine methyltransferase compare
PS417_06895 -0.8 -1.9 DNA-binding protein compare
PS417_11480 -0.8 -2.4 hypothetical protein compare
PS417_19275 -0.8 -0.9 hypothetical protein compare
PS417_10920 -0.8 -1.1 LysR family transcriptional regulator compare
PS417_22575 -0.8 -3.6 exonuclease I compare
PS417_20055 -0.8 -1.8 cob(II)yrinic acid a,c-diamide reductase compare
PS417_23390 -0.8 -2.4 ubiquinol oxidase subunit II compare
PS417_13840 -0.8 -2.7 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
PS417_16320 -0.8 -2.1 protein tyrosine phosphatase compare
PS417_09865 -0.8 -1.3 hypothetical protein compare
PS417_00375 -0.8 -1.6 membrane protein compare
PS417_02485 -0.8 -1.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_05820 -0.8 -1.4 recombinase RecX compare
PS417_06705 -0.8 -1.6 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) (from data) compare
PS417_06530 -0.8 -1.0 membrane protein compare
PS417_28220 -0.8 -1.7 LysR family transcriptional regulator compare
PS417_23820 -0.8 -2.6 hypothetical protein compare
PS417_08740 -0.7 -1.7 ribose-phosphate pyrophosphokinase compare
PS417_21105 -0.7 -3.8 aminodeoxychorismate synthase compare
PS417_04365 -0.7 -0.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_26525 -0.7 -2.2 DEAD/DEAH box helicase compare
PS417_28080 -0.7 -5.3 phosphate ABC transporter permease compare
PS417_01620 -0.7 -1.8 preprotein translocase subunit SecB compare
PS417_21630 -0.7 -1.0 magnesium transporter compare
PS417_04865 -0.7 -2.4 molybdenum cofactor biosynthesis protein MoaC compare
PS417_24560 -0.7 -1.7 ferrous iron transporter compare
PS417_28075 -0.7 -3.7 phosphate ABC transporter permease compare
PS417_08360 -0.7 -1.7 DoxX family protein compare
PS417_08170 -0.7 -3.7 capsular biosynthesis protein compare
PS417_27595 -0.7 -1.1 recombinase XerC compare
PS417_24780 -0.7 -4.7 peptidase C13 compare
PS417_13055 -0.7 -1.5 aminotransferase compare
PS417_12635 -0.7 -2.0 alkanesulfonate monooxygenase compare
PS417_01600 -0.7 -1.9 peptidase M23 compare
PS417_21870 -0.7 -1.7 glycerophosphodiester phosphodiesterase compare
PS417_27380 -0.7 -1.8 GntR family transcriptional regulator compare
PS417_02575 -0.7 -1.8 membrane protein compare
PS417_27360 -0.7 -2.1 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_00075 -0.7 -1.2 hypothetical protein compare
PS417_03705 -0.7 -1.6 2-alkenal reductase compare
PS417_16105 -0.7 -1.8 LysR family transcriptional regulator compare
PS417_02355 -0.7 -2.9 thiamine biosynthesis protein ThiC compare
PS417_27205 -0.7 -2.0 adenylate cyclase compare
PS417_26565 -0.7 -2.0 LysR family transcriptional regulator compare
PS417_07120 -0.7 -1.6 RNA polymerase sigma-H factor compare
PS417_22735 -0.7 -4.2 thiol oxidoreductase compare
PS417_12280 -0.7 -1.3 MerR family transcriptional regulator compare
PS417_18070 -0.7 -0.7 general secretion pathway protein GspH compare
PS417_02395 -0.7 -2.1 DNA topoisomerase IV subunit B compare
PS417_00440 -0.7 -3.0 N-acetylmuramoyl-L-alanine amidase compare
PS417_26800 -0.7 -2.9 cell division protein FtsX compare
PS417_06930 -0.7 -2.2 carnitine dehydratase compare
PS417_11415 -0.7 -1.5 hypothetical protein compare
PS417_01850 -0.7 -2.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_06370 -0.7 -1.0 cold-shock protein compare
PS417_09600 -0.7 -1.9 glycosyl transferase family 1 compare
PS417_05435 -0.7 -2.4 diguanylate cyclase compare


Specific Phenotypes

For 8 genes in this experiment

For liquid stress Fraxetin in Pseudomonas simiae WCS417

For liquid stress Fraxetin across organisms