Experiment set32S526 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 1 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -3.6 -4.1 pantoate--beta-alanine ligase compare
PS417_27865 -3.3 -5.2 LysR family transcriptional regulator compare
PS417_01915 -2.7 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_04380 -2.4 -1.6 ABC transporter permease compare
PS417_16490 -2.4 -1.9 cell division protein FtsK compare
PS417_00650 -2.2 -1.6 LysR family transcriptional regulator compare
PS417_26730 -2.1 -1.2 pyrroline-5-carboxylate reductase compare
PS417_06375 -2.0 -0.8 deoxycytidine triphosphate deaminase compare
PS417_02560 -1.9 -1.9 23S rRNA methyltransferase compare
PS417_06680 -1.9 -5.6 nuclease PIN compare
PS417_22450 -1.7 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_17215 -1.7 -3.2 peptidylprolyl isomerase compare
PS417_00660 -1.7 -3.1 DSBA oxidoreductase compare
PS417_28050 -1.6 -1.3 hypothetical protein compare
PS417_26775 -1.5 -8.3 thiazole synthase compare
PS417_21630 -1.5 -2.2 magnesium transporter compare
PS417_26605 -1.5 -1.6 malonate decarboxylase subunit beta compare
PS417_24600 -1.4 -5.5 hydrogenase compare
PS417_23545 -1.4 -1.8 gamma-glutamyl kinase compare
PS417_02485 -1.3 -3.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_10645 -1.3 -4.1 magnesium ABC transporter ATPase compare
PS417_02255 -1.3 -2.9 lipopolysaccharide kinase compare
PS417_03380 -1.2 -1.7 hypothetical protein compare
PS417_28070 -1.2 -6.6 phosphate ABC transporter ATP-binding protein compare
PS417_24605 -1.2 -2.4 thiamine-phosphate pyrophosphorylase compare
PS417_22620 -1.2 -3.5 pyruvate kinase compare
PS417_13075 -1.1 -1.6 hypothetical protein compare
PS417_02555 -1.1 -6.7 exoribonuclease R compare
PS417_06770 -1.1 -5.6 multidrug transporter compare
PS417_21480 -1.1 -1.3 23S rRNA pseudouridylate synthase compare
PS417_02975 -1.1 -2.6 3-dehydroquinate dehydratase compare
PS417_01605 -1.1 -1.2 phosphoglycerate mutase compare
PS417_24710 -1.1 -6.6 lipoprotein compare
PS417_04365 -1.1 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_27245 -1.0 -1.8 aminotransferase DegT compare
PS417_16555 -1.0 -1.5 cupin compare
PS417_06945 -1.0 -1.4 membrane protein compare
PS417_06775 -1.0 -4.8 antibiotic transporter compare
PS417_24615 -1.0 -1.3 hypothetical protein compare
PS417_01855 -1.0 -1.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_03560 -1.0 -1.3 GTP-binding protein compare
PS417_23390 -1.0 -5.0 ubiquinol oxidase subunit II compare
PS417_11825 -1.0 -2.5 transcriptional regulator compare
PS417_02270 -0.9 -2.1 carbamoyltransferase compare
PS417_08090 -0.9 -0.9 3-oxoacyl-ACP reductase compare
PS417_00655 -0.9 -5.3 DSBA oxidoreductase compare
PS417_04390 -0.9 -1.7 toluene tolerance protein compare
PS417_15480 -0.9 -1.8 ABC transporter substrate-binding protein compare
PS417_27705 -0.9 -1.6 amino acid dehydrogenase compare
PS417_23950 -0.9 -1.2 polynucleotide phosphorylase/polyadenylase compare
PS417_00665 -0.9 -4.4 RND transporter compare
PS417_28080 -0.9 -6.8 phosphate ABC transporter permease compare
PS417_09210 -0.9 -1.3 TetR family transcriptional regulator compare
PS417_09590 -0.9 -3.6 membrane protein compare
PS417_03100 -0.9 -1.0 pilus assembly protein compare
PS417_23370 -0.8 -1.9 protoheme IX farnesyltransferase compare
PS417_15890 -0.8 -1.3 RNA polymerase sigma factor compare
PS417_11725 -0.8 -2.1 peptidase M19 compare
PS417_13425 -0.8 -1.3 cupin compare
PS417_24030 -0.8 -2.1 MFS transporter compare
PS417_19350 -0.8 -2.9 GTP cyclohydrolase compare
PS417_21625 -0.8 -1.0 DNA-binding protein compare
PS417_28075 -0.8 -3.8 phosphate ABC transporter permease compare
PS417_07615 -0.8 -2.4 TetR family transcriptional regulator compare
PS417_00995 -0.8 -1.9 alpha/beta hydrolase compare
PS417_27425 -0.8 -3.7 exopolyphosphatase compare
PS417_06200 -0.8 -4.1 protein-PII uridylyltransferase compare
PS417_03260 -0.8 -0.9 5S ribosomal RNA compare
PS417_27605 -0.8 -3.5 hypothetical protein compare
PS417_05815 -0.8 -3.0 recombinase RecA compare
PS417_02990 -0.8 -2.3 hypothetical protein compare
PS417_01955 -0.8 -5.5 peptidase compare
PS417_26815 -0.8 -1.3 peptidase M16 compare
PS417_00045 -0.8 -1.3 glycerol acyltransferase compare
PS417_23385 -0.8 -4.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_20030 -0.8 -1.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_04650 -0.7 -0.4 D-alanine--D-alanine ligase compare
PS417_24935 -0.7 -0.9 hypothetical protein compare
PS417_23380 -0.7 -1.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_15285 -0.7 -1.0 type VI secretion protein compare
PS417_28515 -0.7 -2.3 16S rRNA methyltransferase compare
PS417_07170 -0.7 -2.0 hypothetical protein compare
PS417_18105 -0.7 -1.1 iron-dicitrate transporter substrate-binding subunit compare
PS417_13175 -0.7 -1.0 iron transporter compare
PS417_05985 -0.7 -2.1 chemotaxis protein CheY compare
PS417_21105 -0.7 -4.0 aminodeoxychorismate synthase compare
PS417_07470 -0.7 -1.1 hypothetical protein compare
PS417_08540 -0.7 -1.6 RNA helicase compare
PS417_19720 -0.7 -1.5 DNA-binding protein compare
PS417_20825 -0.7 -1.3 drug:proton antiporter compare
PS417_27870 -0.7 -1.4 ATP-dependent DNA helicase RecG compare
PS417_04585 -0.7 -1.1 hypothetical protein compare
PS417_08435 -0.7 -1.2 pilus assembly protein PilZ compare
PS417_20855 -0.7 -0.6 hypothetical protein compare
PS417_00380 -0.7 -2.5 zinc ABC transporter ATP-binding protein compare
PS417_07820 -0.7 -0.8 transposase compare
PS417_15975 -0.6 -1.8 glutamate carboxypeptidase compare
PS417_20365 -0.6 -2.5 Cro/Cl family transcriptional regulator compare
PS417_19665 -0.6 -2.4 flagellar motor protein MotD compare
PS417_03915 -0.6 -1.5 tRNA-Thr compare
PS417_24800 -0.6 -3.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_06125 -0.6 -2.0 hypothetical protein compare
PS417_02160 -0.6 -1.0 hypothetical protein compare
PS417_19090 -0.6 -1.9 hypothetical protein compare
PS417_12755 -0.6 -2.0 RND transporter compare
PS417_10145 -0.6 -1.9 hypothetical protein compare
PS417_01590 -0.6 -1.0 polysaccharide deacetylase compare
PS417_14045 -0.6 -2.5 alkyl hydroperoxide reductase compare
PS417_25270 -0.6 -1.7 NrdR family transcriptional regulator compare
PS417_23775 -0.6 -0.9 exodeoxyribonuclease V subunit beta compare
PS417_22445 -0.6 -1.0 ATP-dependent DNA helicase RuvB compare
PS417_08990 -0.6 -2.5 ABC transporter substrate-binding protein compare
PS417_05650 -0.6 -1.5 leucyl-tRNA synthetase compare
PS417_24895 -0.6 -1.1 hypothetical protein compare
PS417_03815 -0.6 -1.3 DNA transporter compare
PS417_16195 -0.6 -0.9 AraC family transcriptional regulator compare
PS417_18040 -0.6 -1.2 general secretion pathway protein GspN compare
PS417_23375 -0.6 -0.6 cytochrome C oxidase compare
PS417_14140 -0.6 -1.9 membrane protein compare
PS417_09615 -0.6 -1.9 glycosyl transferase family 1 compare
PS417_11400 -0.6 -0.9 phosphoglycerate mutase compare
PS417_16005 -0.6 -1.0 ATPase compare
PS417_22530 -0.6 -2.1 hypothetical protein compare
PS417_15135 -0.6 -0.8 hypothetical protein compare
PS417_20130 -0.6 -4.1 dehydrogenase compare
PS417_19125 -0.6 -2.5 LysR family transcriptional regulator compare
PS417_06355 -0.6 -1.8 protein-L-isoaspartate O-methyltransferase compare
PS417_08650 -0.6 -1.6 transcriptional regulator compare
PS417_02950 -0.6 -1.0 tRNA-dihydrouridine synthase B compare
PS417_17440 -0.6 -1.4 beta-lactamase compare
PS417_14235 -0.5 -1.0 hypothetical protein compare
PS417_08410 -0.5 -0.8 hypothetical protein compare
PS417_15120 -0.5 -2.9 chromosome segregation protein SMC compare
PS417_09600 -0.5 -2.1 glycosyl transferase family 1 compare
PS417_04270 -0.5 -3.2 ribonuclease G compare
PS417_08220 -0.5 -0.7 epimerase compare
PS417_25895 -0.5 -1.3 glyoxalase compare
PS417_15035 -0.5 -1.1 alkylhydroperoxidase compare
PS417_28085 -0.5 -4.5 phosphate-binding protein compare
PS417_19415 -0.5 -1.2 allantoinase compare
PS417_08155 -0.5 -0.8 integration host factor subunit beta compare
PS417_17305 -0.5 -1.1 hypothetical protein compare
PS417_27610 -0.5 -2.6 hypothetical protein compare
PS417_01565 -0.5 -2.6 imidazole glycerol phosphate synthase compare
PS417_21320 -0.5 -1.9 transcriptional regulator compare
PS417_14015 -0.5 -2.2 LysR family transcriptional regulator compare
PS417_22895 -0.5 -2.3 tyrosine recombinase XerD compare
PS417_22195 -0.5 -2.6 peptidase compare
PS417_02480 -0.5 -3.5 DNA mismatch repair protein compare
PS417_23490 -0.5 -0.9 dihydrofolate reductase compare
PS417_16720 -0.5 -0.8 membrane protein compare
PS417_18455 -0.5 -1.0 hypothetical protein compare
PS417_15915 -0.5 -1.0 hypothetical protein compare
PS417_23615 -0.5 -1.6 sulfate transporter compare
PS417_22520 -0.5 -0.6 histidine kinase compare
PS417_05575 -0.5 -3.6 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_27640 -0.5 -0.8 TetR family transcriptional regulator compare
PS417_14940 -0.5 -1.1 LysR family transcriptional regulator compare
PS417_13895 -0.5 -2.3 chemotaxis protein CheB compare
PS417_16915 -0.5 -2.0 hemolysin D compare
PS417_24570 -0.5 -1.9 AsnC family transcriptional regulator compare
PS417_19360 -0.5 -2.1 hypothetical protein compare
PS417_18010 -0.5 -2.4 acid phosphatase compare
PS417_02370 -0.5 -0.9 ADP-ribose pyrophosphatase compare
PS417_04420 -0.5 -3.4 histidinol dehydrogenase compare
PS417_13085 -0.5 -1.6 FMN-dependent NADH-azoreductase compare
PS417_22535 -0.5 -2.1 ornithine acetyltransferase compare
PS417_05695 -0.5 -1.7 transcriptional regulator compare
PS417_23705 -0.5 -2.2 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) compare
PS417_05200 -0.5 -1.9 DNA recombination protein RecO compare
PS417_02880 -0.5 -0.8 copper chaperone compare
PS417_04385 -0.5 -0.9 organic solvent ABC transporter substrate-binding protein compare
PS417_10455 -0.5 -1.9 membrane protein compare
PS417_01285 -0.5 -1.1 haloacid dehalogenase compare
PS417_04115 -0.5 -1.4 alpha/beta hydrolase compare
PS417_15100 -0.5 -1.1 BatB protein compare
PS417_21425 -0.5 -1.1 4-amino-4-deoxychorismate lyase compare
PS417_21090 -0.5 -1.1 hypothetical protein compare
PS417_02455 -0.5 -2.3 putative transporter, required for glycine utilization (from data) compare
PS417_19835 -0.5 -1.0 flagellar biosynthesis protein FliS compare
PS417_18425 -0.5 -0.9 sporulation protein compare
PS417_02025 -0.5 -1.5 hypothetical protein compare
PS417_23810 -0.5 -2.6 acetolactate synthase 3 catalytic subunit compare
PS417_14530 -0.5 -1.8 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_25670 -0.5 -2.2 2-nitropropane dioxygenase compare
PS417_27915 -0.5 -1.8 type VI secretion system protein ImpM compare
PS417_04375 -0.5 -0.6 ABC transporter ATP-binding protein compare
PS417_15510 -0.5 -1.3 hypothetical protein compare
PS417_02385 -0.5 -0.8 esterase compare
PS417_01575 -0.5 -1.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_09440 -0.5 -1.4 MerR family transcriptional regulator compare
PS417_17680 -0.5 -2.0 ABC transporter compare
PS417_27430 -0.5 -2.7 hypothetical protein compare
PS417_06825 -0.5 -0.9 hypothetical protein compare
PS417_01045 -0.5 -1.3 RND transporter compare
PS417_03920 -0.5 -1.3 dephospho-CoA kinase compare
PS417_13710 -0.5 -1.4 hypothetical protein compare
PS417_11485 -0.5 -1.3 AraC family transcriptional regulator compare
PS417_03995 -0.5 -2.3 Fe(II)-dependent oxygenase compare
PS417_03335 -0.5 -2.9 MFS transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress Fraxetin across organisms