Experiment set32S524 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 3 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_27300 -4.6 -1.8 cell division protein ZapA compare
PS417_16555 -3.6 -2.5 cupin compare
PS417_27795 -3.3 -1.3 orotate phosphoribosyltransferase compare
PS417_02280 -3.1 -2.2 GlcNAc-PI de-N-acetylase compare
PS417_06680 -3.1 -5.6 nuclease PIN compare
PS417_23375 -2.9 -2.7 cytochrome C oxidase compare
PS417_18545 -2.6 -3.5 cell division protein compare
PS417_18310 -2.4 -1.6 hypothetical protein compare
PS417_23380 -2.4 -3.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_26990 -2.4 -1.3 RNA pyrophosphohydrolase compare
PS417_23915 -2.4 -4.7 pantoate--beta-alanine ligase compare
PS417_08090 -2.3 -1.2 3-oxoacyl-ACP reductase compare
PS417_22450 -2.2 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_10645 -2.2 -6.4 magnesium ABC transporter ATPase compare
PS417_20855 -2.2 -2.0 hypothetical protein compare
PS417_26730 -2.2 -1.2 pyrroline-5-carboxylate reductase compare
PS417_02485 -2.2 -2.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_21655 -2.0 -1.9 aspartate kinase compare
PS417_02880 -1.9 -2.1 copper chaperone compare
PS417_06375 -1.9 -0.7 deoxycytidine triphosphate deaminase compare
PS417_08125 -1.9 -0.7 prephenate dehydratase compare
PS417_21430 -1.9 -1.8 3-oxoacyl-ACP synthase compare
PS417_00920 -1.9 -6.5 diguanylate cyclase compare
PS417_27835 -1.8 -5.3 endoribonuclease compare
PS417_04585 -1.8 -1.6 hypothetical protein compare
PS417_22205 -1.7 -7.8 potassium transporter TrkH compare
PS417_28050 -1.7 -1.4 hypothetical protein compare
PS417_23370 -1.7 -3.8 protoheme IX farnesyltransferase compare
PS417_24745 -1.7 -3.0 gamma-glutamyl phosphate reductase compare
PS417_21480 -1.7 -1.5 23S rRNA pseudouridylate synthase compare
PS417_20715 -1.7 -2.4 cytochrome Cbb3 compare
PS417_17215 -1.7 -1.8 peptidylprolyl isomerase compare
PS417_27425 -1.6 -6.2 exopolyphosphatase compare
PS417_24600 -1.6 -6.1 hydrogenase compare
PS417_26775 -1.5 -6.3 thiazole synthase compare
PS417_24615 -1.5 -1.8 hypothetical protein compare
PS417_27245 -1.5 -2.5 aminotransferase DegT compare
PS417_04390 -1.5 -3.5 toluene tolerance protein compare
PS417_23545 -1.5 -1.9 gamma-glutamyl kinase compare
PS417_27135 -1.5 -1.0 glutamine synthetase compare
PS417_07695 -1.5 -6.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_02555 -1.5 -7.8 exoribonuclease R compare
PS417_22620 -1.4 -4.7 pyruvate kinase compare
PS417_00080 -1.4 -7.0 potassium transporter peripheral membrane component compare
PS417_07615 -1.4 -4.2 TetR family transcriptional regulator compare
PS417_05985 -1.4 -1.8 chemotaxis protein CheY compare
PS417_04385 -1.4 -2.0 organic solvent ABC transporter substrate-binding protein compare
PS417_22570 -1.3 -1.0 H-NS histone compare
PS417_23390 -1.3 -5.9 ubiquinol oxidase subunit II compare
PS417_23385 -1.3 -6.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_04380 -1.3 -1.1 ABC transporter permease compare
PS417_02225 -1.3 -2.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_08540 -1.2 -2.3 RNA helicase compare
PS417_06685 -1.2 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_25320 -1.2 -6.1 dTDP-4-dehydrorhamnose reductase compare
PS417_06245 -1.2 -1.4 zinc metallopeptidase RseP compare
PS417_22935 -1.2 -3.4 hypothetical protein compare
PS417_24710 -1.1 -5.2 lipoprotein compare
PS417_08170 -1.1 -6.4 capsular biosynthesis protein compare
PS417_03560 -1.1 -1.1 GTP-binding protein compare
PS417_27605 -1.1 -4.8 hypothetical protein compare
PS417_01855 -1.1 -2.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_01565 -1.1 -3.1 imidazole glycerol phosphate synthase compare
PS417_00180 -1.1 -1.4 tryptophan synthase subunit alpha compare
PS417_04590 -1.1 -3.6 methyltransferase compare
PS417_13305 -1.0 -1.4 hypothetical protein compare
PS417_26985 -1.0 -4.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_14065 -1.0 -5.8 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_12565 -1.0 -2.2 2-dehydro-3-deoxygluconokinase compare
PS417_19350 -1.0 -3.1 GTP cyclohydrolase compare
PS417_23950 -1.0 -1.2 polynucleotide phosphorylase/polyadenylase compare
PS417_28510 -1.0 -3.7 chromosome partitioning protein compare
PS417_12005 -1.0 -2.4 hypothetical protein compare
PS417_24605 -1.0 -2.4 thiamine-phosphate pyrophosphorylase compare
PS417_06205 -1.0 -5.8 methionine aminopeptidase compare
PS417_28070 -1.0 -5.2 phosphate ABC transporter ATP-binding protein compare
PS417_01195 -1.0 -2.1 RNA-binding protein S4 compare
PS417_19285 -0.9 -1.6 ankyrin compare
PS417_06100 -0.9 -1.8 SAM-dependent methyltransferase compare
PS417_18355 -0.9 -4.3 DNA-binding protein compare
PS417_17945 -0.9 -0.9 hypothetical protein compare
PS417_02895 -0.9 -1.9 precorrin-6Y C5,15-methyltransferase compare
PS417_24500 -0.9 -2.2 DEAD/DEAH box helicase compare
PS417_01185 -0.9 -3.0 ribosomal protein S6 modification protein compare
PS417_07710 -0.9 -2.2 membrane protein compare
PS417_09590 -0.9 -3.1 membrane protein compare
PS417_01575 -0.9 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23820 -0.9 -3.3 hypothetical protein compare
PS417_20705 -0.9 -2.5 cbb3-type cytochrome c oxidase subunit II compare
PS417_05975 -0.9 -0.7 chemotaxis protein CheW compare
PS417_06200 -0.9 -3.3 protein-PII uridylyltransferase compare
PS417_09085 -0.9 -1.2 hypothetical protein compare
PS417_19600 -0.9 -1.3 exonuclease compare
PS417_23475 -0.9 -1.4 hypothetical protein compare
PS417_22575 -0.9 -4.3 exonuclease I compare
PS417_10040 -0.9 -1.1 MFS transporter compare
PS417_01790 -0.9 -5.6 glucan biosynthesis protein G compare
PS417_12805 -0.9 -5.5 glycogen branching protein compare
PS417_16560 -0.9 -1.5 GNAT family acetyltransferase compare
PS417_05650 -0.9 -2.3 leucyl-tRNA synthetase compare
PS417_27870 -0.9 -1.8 ATP-dependent DNA helicase RecG compare
PS417_10720 -0.9 -4.2 chemotaxis protein CheY compare
PS417_11615 -0.9 -1.6 urea ABC transporter ATP-binding protein compare
PS417_02415 -0.9 -3.5 phosphoserine phosphatase compare
PS417_28080 -0.9 -6.9 phosphate ABC transporter permease compare
PS417_26800 -0.8 -4.4 cell division protein FtsX compare
PS417_05160 -0.8 -1.2 DNA polymerase III subunit chi compare
PS417_06365 -0.8 -4.4 RNA polymerase sigma factor compare
PS417_22530 -0.8 -2.6 hypothetical protein compare
PS417_13510 -0.8 -1.0 polyketide cyclase compare
PS417_16370 -0.8 -5.6 chemotaxis protein CheY compare
PS417_16510 -0.8 -3.3 Clp protease ClpX compare
PS417_08410 -0.8 -2.1 hypothetical protein compare
PS417_22690 -0.8 -1.6 phosphogluconate dehydratase compare
PS417_02270 -0.8 -2.1 carbamoyltransferase compare
PS417_12310 -0.8 -4.2 methionine synthase compare
PS417_08730 -0.8 -1.3 cytochrome C compare
PS417_13620 -0.8 -0.7 thermostable hemolysin compare
PS417_23910 -0.8 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_27075 -0.8 -1.5 thiol-disulfide isomerase compare
PS417_08155 -0.8 -1.0 integration host factor subunit beta compare
PS417_22400 -0.8 -4.0 7-cyano-7-deazaguanine synthase compare
PS417_02560 -0.8 -1.0 23S rRNA methyltransferase compare
PS417_27785 -0.8 -4.4 phosphoglucomutase compare
PS417_27865 -0.8 -2.2 LysR family transcriptional regulator compare
PS417_21625 -0.8 -0.9 DNA-binding protein compare
PS417_15110 -0.7 -3.1 protein BatD compare
PS417_24570 -0.7 -2.6 AsnC family transcriptional regulator compare
PS417_06620 -0.7 -1.5 hypothetical protein compare
PS417_01795 -0.7 -6.0 glucosyltransferase MdoH compare
PS417_01955 -0.7 -5.3 peptidase compare
PS417_27640 -0.7 -1.0 TetR family transcriptional regulator compare
PS417_04305 -0.7 -1.0 aspartate ammonia-lyase compare
PS417_07170 -0.7 -2.3 hypothetical protein compare
PS417_01600 -0.7 -3.0 peptidase M23 compare
PS417_12355 -0.7 -1.2 magnesium chelatase compare
PS417_04595 -0.7 -1.4 cell division protein MraZ compare
PS417_15875 -0.7 -1.4 LuxR family transcriptional regulator compare
PS417_00175 -0.7 -1.0 CigR compare
PS417_13255 -0.7 -1.8 ABC transporter compare
PS417_09830 -0.7 -3.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_07120 -0.7 -2.7 RNA polymerase sigma-H factor compare
PS417_24935 -0.7 -0.9 hypothetical protein compare
PS417_09730 -0.7 -2.1 adenylylsulfate kinase compare
PS417_19630 -0.7 -2.1 LuxR family transcriptional regulator compare
PS417_27295 -0.7 -2.4 hypothetical protein compare
PS417_08990 -0.7 -2.4 ABC transporter substrate-binding protein compare
PS417_01560 -0.7 -1.8 imidazoleglycerol-phosphate dehydratase compare
PS417_02975 -0.7 -1.7 3-dehydroquinate dehydratase compare
PS417_04530 -0.7 -0.8 glycerate dehydrogenase compare
PS417_09625 -0.7 -2.5 sugar ABC transporter substrate-binding protein compare
PS417_04475 -0.7 -2.1 hypothetical protein compare
PS417_01710 -0.7 -2.8 histidine utilization repressor compare
PS417_27305 -0.6 -4.0 5-formyltetrahydrofolate cyclo-ligase compare
PS417_04650 -0.6 -0.3 D-alanine--D-alanine ligase compare
PS417_23880 -0.6 -3.0 glutamyl-Q tRNA(Asp) ligase compare
PS417_20755 -0.6 -1.8 membrane protein compare
PS417_06930 -0.6 -2.1 carnitine dehydratase compare
PS417_26695 -0.6 -0.9 uracil phosphoribosyltransferase compare
PS417_22065 -0.6 -3.3 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_27040 -0.6 -1.2 3-phosphoglycerate dehydrogenase compare
PS417_21870 -0.6 -1.6 glycerophosphodiester phosphodiesterase compare
PS417_05865 -0.6 -1.1 hypothetical protein compare
PS417_25680 -0.6 -3.1 short-chain dehydrogenase compare
PS417_08360 -0.6 -1.3 DoxX family protein compare
PS417_23825 -0.6 -3.1 penicillin-binding protein compare
PS417_22000 -0.6 -1.6 glutathione S-transferase compare
PS417_01285 -0.6 -1.5 haloacid dehalogenase compare
PS417_00455 -0.6 -1.1 hypothetical protein compare
PS417_21105 -0.6 -3.9 aminodeoxychorismate synthase compare
PS417_20785 -0.6 -1.4 transcriptional regulator compare
PS417_01945 -0.6 -2.5 nuclease compare
PS417_21515 -0.6 -5.0 transcriptional regulator compare
PS417_19425 -0.6 -0.8 allantoicase compare
PS417_16105 -0.6 -1.1 LysR family transcriptional regulator compare
PS417_17110 -0.6 -3.0 spore coat protein compare
PS417_24620 -0.6 -1.2 hypothetical protein compare
PS417_25270 -0.6 -1.9 NrdR family transcriptional regulator compare
PS417_05580 -0.6 -4.2 glycerol uptake facilitator GlpF compare
PS417_13525 -0.6 -1.8 membrane protein compare
PS417_24780 -0.6 -4.5 peptidase C13 compare
PS417_19995 -0.6 -3.0 Long-chain fatty acid transport protein compare
PS417_15285 -0.6 -0.8 type VI secretion protein compare
PS417_21425 -0.6 -0.7 4-amino-4-deoxychorismate lyase compare
PS417_05325 -0.6 -1.5 fimbrial protein compare
PS417_26805 -0.6 -0.8 cell division protein FtsE compare
PS417_08945 -0.6 -3.4 heat shock protein 90 compare
PS417_04420 -0.6 -3.7 histidinol dehydrogenase compare
PS417_27520 -0.6 -2.3 uroporphyrin-III methyltransferase compare
PS417_27360 -0.6 -3.3 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_11115 -0.6 -2.8 peroxidase compare
PS417_20875 -0.6 -1.9 chromosome segregation protein SMC compare
PS417_15400 -0.6 -1.1 hypothetical protein compare
PS417_12015 -0.6 -1.7 phosphoglycerate mutase compare
PS417_22350 -0.6 -1.5 Fis family transcriptional regulator compare
PS417_09640 -0.6 -3.7 capsular biosynthesis protein compare
PS417_15975 -0.6 -1.4 glutamate carboxypeptidase compare
PS417_23580 -0.6 -1.1 peptidylprolyl isomerase compare
PS417_19620 -0.6 -1.2 hypothetical protein compare
PS417_27705 -0.6 -1.1 amino acid dehydrogenase compare


Specific Phenotypes

For 2 genes in this experiment

For liquid stress Scopoletin in Pseudomonas simiae WCS417

For liquid stress Scopoletin across organisms