Experiment set32S524 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 3 mM; liquid stress

200 most detrimental genes:

  gene name fitness t score description  
PS417_19825 +4.0 28.8 ATPase AAA compare
PS417_24275 +3.0 26.9 diguanylate phosphodiesterase compare
PS417_19830 +1.7 2.9 flagellar assembly protein FliT compare
PS417_27875 +1.5 11.5 histidine kinase compare
PS417_00915 +1.3 1.6 aminotransferase compare
PS417_01395 +1.2 10.5 biofilm formation protein PelB compare
PS417_01405 +1.1 5.9 sugar transporter compare
PS417_01410 +1.1 6.3 transporter compare
PS417_19710 +1.1 5.4 flagellar biosynthesis protein FlhA compare
PS417_19765 +1.1 10.0 flagellar hook-length control protein compare
PS417_21565 +1.0 6.5 flagellar basal body rod protein FlgC compare
PS417_01400 +1.0 4.9 hypothetical protein compare
PS417_00025 +1.0 7.5 transcriptional regulator compare
PS417_21570 +1.0 8.0 flagellar basal body rod protein FlgB compare
PS417_21585 +1.0 8.2 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_01390 +1.0 6.2 PbsX family transcriptional regulator compare
PS417_01420 +1.0 8.3 histidine kinase compare
PS417_01415 +1.0 7.3 glycosyl transferase family 1 compare
PS417_19725 +1.0 5.6 flagellar biosynthesis protein FlhB compare
PS417_19745 +1.0 3.7 flagellar assembly protein FliO compare
PS417_00040 +1.0 7.6 ATPase compare
PS417_19885 +1.0 6.0 flagellar basal body rod protein FlgG compare
PS417_00740 +0.9 7.0 membrane protein compare
PS417_01145 +0.9 1.7 taurine transporter ATP-binding subunit compare
PS417_02440 +0.9 3.3 flagellar motor protein MotB compare
PS417_21630 +0.9 2.3 magnesium transporter compare
PS417_00745 +0.9 6.1 outer membrane N-deacetylase compare
PS417_28280 +0.9 2.9 hypothetical protein compare
PS417_19735 +0.9 5.9 flagellar biosynthesis protein FliQ compare
PS417_21555 +0.8 7.3 flagellar hook protein FlgE compare
PS417_19695 +0.8 7.3 flagellar biosynthesis sigma factor compare
PS417_24135 +0.8 2.9 hypothetical protein compare
PS417_19865 +0.8 6.6 flagellar hook protein FlgK compare
PS417_19880 +0.8 4.8 flagellar basal body L-ring protein compare
PS417_19870 +0.8 3.7 flagellar rod assembly protein FlgJ compare
PS417_19805 +0.8 2.5 flagellar M-ring protein FliF compare
PS417_01630 +0.8 1.6 hypothetical protein compare
PS417_05400 +0.8 2.0 hypothetical protein compare
PS417_19740 +0.8 4.6 flagellar biosynthesis protein flip compare
PS417_08130 +0.8 1.8 aspartate aminotransferase compare
PS417_06865 +0.8 2.3 transporter compare
PS417_10810 +0.8 2.0 hypothetical protein compare
PS417_15495 +0.8 5.2 FAD-dependent oxidoreductase compare
PS417_19860 +0.7 6.6 flagellar hook protein FlgL compare
PS417_19785 +0.7 4.2 flagellar biogenesis protein compare
PS417_06710 +0.7 1.1 beta-ketoadipyl CoA thiolase compare
PS417_19730 +0.7 3.5 flagellar biosynthesis protein FliR compare
PS417_19840 +0.7 5.4 flagellar cap protein FliD compare
PS417_19760 +0.7 4.0 flagellar basal body protein FliL compare
PS417_13090 +0.7 1.9 dienelactone hydrolase compare
PS417_23615 +0.7 1.7 sulfate transporter compare
PS417_11485 +0.7 1.7 AraC family transcriptional regulator compare
PS417_12520 +0.7 1.9 hypothetical protein compare
PS417_00750 +0.7 4.3 N-glycosyltransferase compare
PS417_20720 +0.7 2.7 cbb3-type cytochrome c oxidase subunit I compare
PS417_21595 +0.6 3.0 flagellar biosynthesis protein FlgN compare
PS417_19030 +0.6 1.6 sodium:dicarboxylate symporter compare
PS417_11770 +0.6 1.9 pyruvate dehydrogenase compare
PS417_17160 +0.6 1.3 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_19795 +0.6 5.8 flagellar assembly protein FliH compare
PS417_22375 +0.6 1.1 cold-shock protein compare
PS417_27000 +0.6 1.9 membrane protein compare
PS417_22945 +0.6 1.9 phosphoribosylglycinamide formyltransferase compare
PS417_02070 +0.6 1.2 membrane protein compare
PS417_11830 +0.6 1.6 membrane protein compare
PS417_00755 +0.6 0.8 biofilm PGA synthesis protein PgaD compare
PS417_21220 +0.6 2.2 acetyl-CoA acetyltransferase compare
PS417_01965 +0.6 1.8 fimbriae biosynthesis protein compare
PS417_13855 +0.6 1.3 acetyl-CoA acetyltransferase compare
PS417_23150 +0.6 3.0 Cro/Cl family transcriptional regulator compare
PS417_15885 +0.6 1.8 GCN5 family acetyltransferase compare
PS417_09735 +0.6 1.3 hypothetical protein compare
PS417_27535 +0.6 4.2 chemotaxis protein CheY compare
PS417_18990 +0.6 2.1 membrane protein compare
PS417_04525 +0.6 3.4 16S rRNA methyltransferase compare
PS417_18920 +0.6 3.0 hypothetical protein compare
PS417_23455 +0.6 1.5 LrgA compare
PS417_06635 +0.6 1.2 ferredoxin compare
PS417_19800 +0.6 1.9 flagellar motor switch protein FliG compare
PS417_17780 +0.6 1.2 Ais protein compare
PS417_12740 +0.6 2.1 secretion protein HlyD compare
PS417_06175 +0.5 3.3 cysteine sulfinate desulfinase compare
PS417_08465 +0.5 2.0 elongation factor GreAB compare
PS417_07875 +0.5 0.9 hypothetical protein compare
PS417_26275 +0.5 1.3 glycine/betaine ABC transporter substrate-binding protein compare
PS417_22875 +0.5 1.6 hypothetical protein compare
PS417_27595 +0.5 0.8 recombinase XerC compare
PS417_27195 +0.5 1.1 N-acetylglutamate synthase compare
PS417_07840 +0.5 1.6 hypothetical protein compare
PS417_15035 +0.5 1.3 alkylhydroperoxidase compare
PS417_17125 +0.5 1.3 transcriptional regulator compare
PS417_26120 +0.5 1.2 hypothetical protein compare
PS417_10320 +0.5 1.9 hypothetical protein compare
PS417_14890 +0.5 1.3 LysR family transcriptional regulator compare
PS417_27215 +0.5 2.2 hypothetical protein compare
PS417_11820 +0.5 2.0 histidine kinase compare
PS417_03325 +0.5 2.3 acid phosphatase compare
PS417_02435 +0.5 3.9 flagellar motor protein MotA compare
PS417_21360 +0.5 0.9 termination factor Rho compare
PS417_10135 +0.5 2.0 phage tail protein compare
PS417_19790 +0.5 2.6 ATP synthase compare
PS417_25650 +0.5 2.7 anhydro-N-acetylmuramic acid kinase compare
PS417_18200 +0.5 1.0 glyoxalase compare
PS417_04875 +0.5 0.8 molybdenum cofactor biosynthesis protein MoaE compare
PS417_14295 +0.5 2.1 AraC family transcriptional regulator compare
PS417_20525 +0.5 1.9 LysR family transcriptional regulator compare
PS417_12190 +0.5 2.2 microcin ABC transporter ATP-binding protein compare
PS417_16815 +0.5 1.1 acyl-CoA dehydrogenase compare
PS417_17065 +0.5 0.9 catalase compare
PS417_07245 +0.5 1.7 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_15135 +0.5 1.3 hypothetical protein compare
PS417_11710 +0.5 2.2 N(5)-hydroxyornithine transformylase PvdF compare
PS417_25380 +0.5 1.0 hypothetical protein compare
PS417_04500 +0.5 1.1 hypothetical protein compare
PS417_00030 +0.5 1.0 hypothetical protein compare
PS417_22720 +0.5 1.7 membrane protein compare
PS417_04750 +0.5 1.5 hypothetical protein compare
PS417_08825 +0.4 1.7 TetR family transcriptional regulator compare
PS417_21185 +0.4 1.6 hypothetical protein compare
PS417_27675 +0.4 2.0 xanthine phosphoribosyltransferase compare
PS417_18130 +0.4 2.0 ABC transporter substrate-binding protein compare
PS417_00900 +0.4 1.2 4-aminobutyrate aminotransferase compare
PS417_15665 +0.4 1.2 hypothetical protein compare
PS417_15820 +0.4 1.6 universal stress protein UspA compare
PS417_19440 +0.4 1.2 purine permease compare
PS417_00535 +0.4 1.5 Holliday junction resolvase compare
PS417_27100 +0.4 1.4 phosphohydrolase compare
PS417_07455 +0.4 0.9 glutamine amidotransferase compare
PS417_17795 +0.4 1.4 ABC transporter permease compare
PS417_05045 +0.4 1.4 acetamidase compare
PS417_02845 +0.4 1.8 ABC transporter permease compare
PS417_09460 +0.4 0.8 alkanesulfonate monooxygenase compare
PS417_24085 +0.4 1.6 protein RnfH compare
PS417_12775 +0.4 2.0 GntR family transcriptional regulator compare
PS417_00295 +0.4 3.1 hypothetical protein compare
PS417_15255 +0.4 1.4 serine/threonine protein kinase compare
PS417_24170 +0.4 4.1 cell division protein FtsK compare
PS417_10370 +0.4 2.0 ATPase compare
PS417_12910 +0.4 1.4 alanine racemase compare
PS417_26230 +0.4 1.5 electron transfer flavoprotein subunit alpha compare
PS417_16490 +0.4 0.3 cell division protein FtsK compare
PS417_19625 +0.4 1.9 histidine kinase compare
PS417_18965 +0.4 2.0 dienelactone hydrolase compare
PS417_10275 +0.4 1.1 histidine kinase compare
PS417_13065 +0.4 1.9 UDP pyrophosphate phosphatase compare
PS417_12735 +0.4 1.3 peroxidase compare
PS417_11900 +0.4 3.6 conjugal transfer protein TraR compare
PS417_27590 +0.4 2.0 hypothetical protein compare
PS417_14195 +0.4 1.8 magnesium ABC transporter ATPase compare
PS417_24155 +0.4 0.6 ATP-binding protein compare
PS417_06330 +0.4 2.1 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_19850 +0.4 2.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_18000 +0.4 1.8 hypothetical protein compare
PS417_17980 +0.4 0.9 ABC transporter permease compare
PS417_24560 +0.4 1.2 ferrous iron transporter compare
PS417_17565 +0.4 1.1 branched-chain amino acid aminotransferase compare
PS417_02890 +0.4 1.9 cobalt-precorrin-6X reductase compare
PS417_16985 +0.4 1.8 membrane protein compare
PS417_00495 +0.4 1.2 ABC transporter permease compare
PS417_27180 +0.4 0.9 peroxidase compare
PS417_09470 +0.4 0.9 hypothetical protein compare
PS417_16000 +0.4 0.6 chemotaxis protein CheY compare
PS417_10515 +0.4 1.7 acetyl-CoA acetyltransferase compare
PS417_24765 +0.4 1.6 membrane protein compare
PS417_21340 +0.4 2.3 short-chain dehydrogenase compare
PS417_17590 +0.4 1.2 ABC transporter substrate-binding protein compare
PS417_12515 +0.4 1.5 lactate dehydrogenase compare
PS417_20650 +0.4 2.8 hypothetical protein compare
PS417_07015 +0.4 1.6 helicase compare
PS417_19500 +0.4 1.1 antibiotic synthesis protein MbtH compare
PS417_00370 +0.4 0.6 hypothetical protein compare
PS417_00845 +0.4 1.0 transcriptional regulator compare
PS417_27415 +0.4 1.2 fimbrial chaperone protein compare
PS417_15215 +0.4 0.9 protein activator of alkane oxidation PraA compare
PS417_09300 +0.4 1.8 peptidylprolyl isomerase compare
PS417_19020 +0.4 0.9 dimethylmenaquinone methyltransferase compare
PS417_25095 +0.4 1.7 hypothetical protein compare
PS417_15695 +0.4 1.7 molybdenum cofactor biosynthesis protein A compare
PS417_24175 +0.4 2.9 hypothetical protein compare
PS417_17105 +0.4 1.0 spore coat protein compare
PS417_10995 +0.4 1.0 GntR family transcriptional regulator compare
PS417_19490 +0.4 1.7 mechanosensitive ion channel protein compare
PS417_02670 +0.4 1.1 ABC transporter compare
PS417_18775 +0.4 1.3 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
PS417_12375 +0.4 1.4 serine/threonine protein phosphatase compare
PS417_02865 +0.4 1.0 peptidase compare
PS417_00380 +0.4 2.2 zinc ABC transporter ATP-binding protein compare
PS417_24655 +0.4 1.3 hypothetical protein compare
PS417_12345 +0.4 1.3 cobalamin biosynthesis protein CobW compare
PS417_13140 +0.4 0.9 oxidoreductase compare
PS417_26220 +0.4 1.6 Rieske (2Fe-2S) protein compare
PS417_13445 +0.4 1.0 D-aminopeptidase compare
PS417_07870 +0.4 1.1 hypothetical protein compare
PS417_16255 +0.4 1.0 RNA polymerase sigma factor compare
PS417_22580 +0.4 1.2 membrane protein compare
PS417_14655 +0.4 0.7 lysine transporter LysE compare
PS417_22445 +0.4 0.4 ATP-dependent DNA helicase RuvB compare
PS417_02705 +0.4 0.7 urease accessory protein UreF compare
PS417_11825 +0.4 1.5 transcriptional regulator compare
PS417_11415 +0.4 1.6 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For liquid stress Scopoletin in Pseudomonas simiae WCS417

For liquid stress Scopoletin across organisms