Experiment set32S522 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 1 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_22450 -3.8 -2.5 ATP-dependent DNA helicase RuvA compare
PS417_23915 -3.1 -5.8 pantoate--beta-alanine ligase compare
PS417_03560 -2.6 -2.4 GTP-binding protein compare
PS417_08090 -2.5 -1.3 3-oxoacyl-ACP reductase compare
PS417_28050 -2.4 -2.3 hypothetical protein compare
PS417_24600 -2.2 -5.2 hydrogenase compare
PS417_26730 -2.1 -1.1 pyrroline-5-carboxylate reductase compare
PS417_06680 -2.1 -6.0 nuclease PIN compare
PS417_08125 -2.1 -0.7 prephenate dehydratase compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_22565 -2.0 -0.7 formyltetrahydrofolate deformylase compare
PS417_24605 -1.9 -3.8 thiamine-phosphate pyrophosphorylase compare
PS417_26775 -1.8 -8.0 thiazole synthase compare
PS417_10405 -1.7 -1.8 filamentous hemagglutinin compare
PS417_23950 -1.6 -1.3 polynucleotide phosphorylase/polyadenylase compare
PS417_19955 -1.5 -1.5 hypothetical protein compare
PS417_04380 -1.5 -1.2 ABC transporter permease compare
PS417_27795 -1.5 -0.8 orotate phosphoribosyltransferase compare
PS417_24745 -1.4 -1.7 gamma-glutamyl phosphate reductase compare
PS417_04365 -1.4 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02485 -1.4 -3.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27585 -1.3 -2.0 diaminopimelate epimerase compare
PS417_23545 -1.3 -1.2 gamma-glutamyl kinase compare
PS417_02555 -1.3 -7.3 exoribonuclease R compare
PS417_08410 -1.3 -2.5 hypothetical protein compare
PS417_10645 -1.3 -3.5 magnesium ABC transporter ATPase compare
PS417_03260 -1.2 -1.2 5S ribosomal RNA compare
PS417_21630 -1.2 -2.1 magnesium transporter compare
PS417_07615 -1.1 -5.0 TetR family transcriptional regulator compare
PS417_26770 -1.1 -2.6 tRNA (guanine-N7)-methyltransferase compare
PS417_23380 -1.1 -1.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_24710 -1.1 -5.6 lipoprotein compare
PS417_19350 -1.1 -3.3 GTP cyclohydrolase compare
PS417_04385 -1.1 -1.7 organic solvent ABC transporter substrate-binding protein compare
PS417_22690 -1.1 -1.6 phosphogluconate dehydratase compare
PS417_07620 -1.0 -1.9 beta-hexosaminidase compare
PS417_17680 -1.0 -1.9 ABC transporter compare
PS417_01565 -1.0 -3.4 imidazole glycerol phosphate synthase compare
PS417_24615 -1.0 -1.5 hypothetical protein compare
PS417_00920 -1.0 -3.9 diguanylate cyclase compare
PS417_05695 -1.0 -3.1 transcriptional regulator compare
PS417_09210 -0.9 -1.6 TetR family transcriptional regulator compare
PS417_16510 -0.9 -3.2 Clp protease ClpX compare
PS417_27195 -0.9 -1.2 N-acetylglutamate synthase compare
PS417_10060 -0.9 -1.9 hypothetical protein compare
PS417_01855 -0.9 -1.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_27945 -0.9 -1.4 type VI secretion protein ImpA compare
PS417_27835 -0.9 -3.2 endoribonuclease compare
PS417_08730 -0.9 -1.4 cytochrome C compare
PS417_21425 -0.9 -1.8 4-amino-4-deoxychorismate lyase compare
PS417_27605 -0.9 -3.7 hypothetical protein compare
PS417_19505 -0.9 -1.5 2,4-diaminobutyrate 4-aminotransferase compare
PS417_23385 -0.9 -3.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_19415 -0.8 -2.6 allantoinase compare
PS417_27815 -0.8 -1.6 hypothetical protein compare
PS417_23370 -0.8 -2.6 protoheme IX farnesyltransferase compare
PS417_04390 -0.8 -1.2 toluene tolerance protein compare
PS417_27300 -0.8 -0.7 cell division protein ZapA compare
PS417_22530 -0.8 -2.6 hypothetical protein compare
PS417_27425 -0.8 -3.5 exopolyphosphatase compare
PS417_19995 -0.8 -4.9 Long-chain fatty acid transport protein compare
PS417_04530 -0.8 -1.6 glycerate dehydrogenase compare
PS417_21360 -0.8 -1.0 termination factor Rho compare
PS417_17160 -0.8 -1.5 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_20705 -0.7 -1.8 cbb3-type cytochrome c oxidase subunit II compare
PS417_22260 -0.7 -2.2 segregation and condensation protein B compare
PS417_22445 -0.7 -2.0 ATP-dependent DNA helicase RuvB compare
PS417_13055 -0.7 -1.4 aminotransferase compare
PS417_27245 -0.7 -1.4 aminotransferase DegT compare
PS417_07875 -0.7 -0.9 hypothetical protein compare
PS417_20985 -0.7 -0.5 porin compare
PS417_23810 -0.7 -4.2 acetolactate synthase 3 catalytic subunit compare
PS417_26850 -0.7 -0.7 twin-arginine translocation pathway signal protein compare
PS417_26990 -0.7 -0.6 RNA pyrophosphohydrolase compare
PS417_27870 -0.7 -1.6 ATP-dependent DNA helicase RecG compare
PS417_22520 -0.7 -0.9 histidine kinase compare
PS417_10185 -0.7 -2.3 hypothetical protein compare
PS417_21780 -0.7 -2.7 argininosuccinate lyase compare
PS417_28325 -0.7 -1.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_09615 -0.7 -3.6 glycosyl transferase family 1 compare
PS417_18090 -0.7 -2.5 iron ABC transporter compare
PS417_22870 -0.7 -1.8 lipoprotein compare
PS417_00385 -0.7 -0.9 Fur family transcriptional regulator compare
PS417_17215 -0.7 -1.1 peptidylprolyl isomerase compare
PS417_22840 -0.7 -1.2 tRNA-Met compare
PS417_18690 -0.7 -2.4 aromatic amino acid aminotransferase compare
PS417_10680 -0.7 -2.0 enoyl-CoA hydratase compare
PS417_22015 -0.7 -1.3 hypothetical protein compare
PS417_23475 -0.7 -1.1 hypothetical protein compare
PS417_01710 -0.7 -2.2 histidine utilization repressor compare
PS417_01095 -0.6 -1.0 amino acid ABC transporter ATP-binding protein compare
PS417_08680 -0.6 -1.4 flagellar biosynthesis protein FlhB compare
PS417_02975 -0.6 -2.8 3-dehydroquinate dehydratase compare
PS417_12375 -0.6 -1.8 serine/threonine protein phosphatase compare
PS417_19620 -0.6 -1.6 hypothetical protein compare
PS417_01290 -0.6 -1.0 ADP-ribose diphosphatase compare
PS417_25390 -0.6 -2.3 MFS transporter compare
PS417_07695 -0.6 -2.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_14905 -0.6 -2.0 C4-dicarboxylate ABC transporter compare
PS417_21655 -0.6 -0.8 aspartate kinase compare
PS417_10855 -0.6 -2.8 chemotaxis protein CheY compare
PS417_12805 -0.6 -4.4 glycogen branching protein compare
PS417_18495 -0.6 -1.0 hypothetical protein compare
PS417_11925 -0.6 -1.8 hypothetical protein compare
PS417_24560 -0.6 -1.7 ferrous iron transporter compare
PS417_05575 -0.6 -3.4 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_23375 -0.6 -1.1 cytochrome C oxidase compare
PS417_26645 -0.6 -1.3 chemotaxis protein compare
PS417_25270 -0.6 -1.9 NrdR family transcriptional regulator compare
PS417_19675 -0.6 -1.5 chemotaxis protein CheY compare
PS417_13425 -0.6 -1.8 cupin compare
PS417_05025 -0.6 -1.4 maleylacetoacetate isomerase compare
PS417_14260 -0.6 -1.4 phosphate ABC transporter permease compare
PS417_07575 -0.6 -1.7 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_00705 -0.6 -1.2 MarR family transcriptional regulator compare
PS417_11390 -0.6 -2.0 LysR family transcriptional regulator compare
PS417_10480 -0.6 -1.7 glutathione S-transferase compare
PS417_16695 -0.6 -1.9 hypothetical protein compare
PS417_02360 -0.6 -1.9 nitrate reductase compare
PS417_01575 -0.6 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_16810 -0.6 -1.7 acyl-CoA dehydrogenase compare
PS417_00185 -0.6 -1.3 tryptophan synthase subunit beta compare
PS417_09915 -0.6 -0.9 hypothetical protein compare
PS417_27705 -0.6 -1.1 amino acid dehydrogenase compare
PS417_03455 -0.6 -1.1 type III secretion protein compare
PS417_15770 -0.6 -1.0 pyridoxine 5'-phosphate oxidase compare
PS417_23615 -0.6 -1.0 sulfate transporter compare
PS417_22400 -0.6 -3.3 7-cyano-7-deazaguanine synthase compare
PS417_19215 -0.5 -1.7 polyphosphate kinase compare
PS417_24235 -0.5 -1.1 hypothetical protein compare
PS417_08220 -0.5 -0.6 epimerase compare
PS417_18160 -0.5 -1.6 YeeE/YedE compare
PS417_14400 -0.5 -1.5 hypothetical protein compare
PS417_23805 -0.5 -1.1 acetolactate synthase 3 regulatory subunit compare
PS417_20250 -0.5 -2.1 copper resistance protein CopC compare
PS417_15465 -0.5 -1.5 carboxynorspermidine decarboxylase compare
PS417_12280 -0.5 -0.7 MerR family transcriptional regulator compare
PS417_04440 -0.5 -1.4 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_27055 -0.5 -1.7 hypothetical protein compare
PS417_06075 -0.5 -1.2 hypothetical protein compare
PS417_06200 -0.5 -1.9 protein-PII uridylyltransferase compare
PS417_05535 -0.5 -1.1 Fis family transcriptional regulator compare
PS417_12540 -0.5 -1.3 hypothetical protein compare
PS417_14515 -0.5 -1.1 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_09600 -0.5 -2.1 glycosyl transferase family 1 compare
PS417_04115 -0.5 -2.2 alpha/beta hydrolase compare
PS417_01750 -0.5 -2.0 histidine ammonia-lyase compare
PS417_03100 -0.5 -0.7 pilus assembly protein compare
PS417_07710 -0.5 -1.5 membrane protein compare
PS417_15915 -0.5 -1.0 hypothetical protein compare
PS417_15520 -0.5 -1.7 hypothetical protein compare
PS417_23390 -0.5 -2.6 ubiquinol oxidase subunit II compare
PS417_23995 -0.5 -0.5 preprotein translocase subunit SecG compare
PS417_01560 -0.5 -1.1 imidazoleglycerol-phosphate dehydratase compare
PS417_14805 -0.5 -1.1 AraC family transcriptional regulator compare
PS417_28070 -0.5 -3.2 phosphate ABC transporter ATP-binding protein compare
PS417_07165 -0.5 -2.5 dihydrodipicolinate synthase compare
PS417_27610 -0.5 -3.4 hypothetical protein compare
PS417_25320 -0.5 -3.5 dTDP-4-dehydrorhamnose reductase compare
PS417_12355 -0.5 -1.0 magnesium chelatase compare
PS417_01510 -0.5 -1.4 hypothetical protein compare
PS417_14140 -0.5 -1.3 membrane protein compare
PS417_00180 -0.5 -0.7 tryptophan synthase subunit alpha compare
PS417_05635 -0.5 -3.1 membrane protein compare
PS417_09730 -0.5 -1.0 adenylylsulfate kinase compare
PS417_12015 -0.5 -1.9 phosphoglycerate mutase compare
PS417_23080 -0.5 -1.6 sugar ABC transporter ATPase compare
PS417_01960 -0.5 -1.8 pilus assembly protein compare
PS417_11015 -0.5 -1.9 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
PS417_13720 -0.5 -2.1 hypothetical protein compare
PS417_15865 -0.5 -2.0 hypothetical protein compare
PS417_09300 -0.5 -1.8 peptidylprolyl isomerase compare
PS417_04050 -0.5 -0.8 peptide ABC transporter ATP-binding protein compare
PS417_26995 -0.5 -2.7 phosphoserine phosphatase compare
PS417_20775 -0.5 -1.6 coproporphyrinogen III oxidase compare
PS417_09630 -0.5 -2.3 glycosyl transferase compare
PS417_06355 -0.5 -0.8 protein-L-isoaspartate O-methyltransferase compare
PS417_04990 -0.5 -1.2 GIY-YIG nuclease compare
PS417_22085 -0.5 -1.1 aldehyde dehydrogenase compare
PS417_11615 -0.5 -1.2 urea ABC transporter ATP-binding protein compare
PS417_16855 -0.5 -1.1 cation:proton antiporter compare
PS417_08650 -0.5 -1.8 transcriptional regulator compare
PS417_25985 -0.5 -1.2 dethiobiotin synthetase compare
PS417_22065 -0.5 -2.6 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_24625 -0.5 -2.1 (dimethylallyl)adenosine tRNA methylthiotransferase compare
PS417_14075 -0.5 -0.7 hypothetical protein compare
PS417_05130 -0.5 -1.1 glutaredoxin compare
PS417_16020 -0.5 -2.1 LysR family transcriptional regulator compare
PS417_18635 -0.5 -1.0 4-hydroxybenzoyl-CoA thioesterase compare
PS417_26280 -0.5 -1.7 NADPH:quinone reductase compare
PS417_21600 -0.5 -2.8 pilus assembly protein PilZ compare
PS417_15065 -0.5 -0.7 GntR family transcriptional regulator compare
PS417_06875 -0.5 -1.0 iron dicitrate transport regulator FecR compare
PS417_11755 -0.5 -1.5 diacetyl reductase compare
PS417_13620 -0.5 -1.2 thermostable hemolysin compare
PS417_02895 -0.5 -0.7 precorrin-6Y C5,15-methyltransferase compare
PS417_27935 -0.5 -0.8 type VI secretion protein compare
PS417_10670 -0.5 -2.4 2,5-diketo-D-gluconic acid reductase compare
PS417_10765 -0.5 -1.8 hypothetical protein compare
PS417_11720 -0.5 -0.9 class V aminotransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress Scopoletin across organisms