Experiment set32S520 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 3 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_23950 -4.2 -2.7 polynucleotide phosphorylase/polyadenylase compare
PS417_20855 -3.7 -2.0 hypothetical protein compare
PS417_24745 -3.2 -2.2 gamma-glutamyl phosphate reductase compare
PS417_16555 -3.1 -2.1 cupin compare
PS417_21625 -3.0 -1.7 DNA-binding protein compare
PS417_27795 -2.9 -1.1 orotate phosphoribosyltransferase compare
PS417_02280 -2.6 -1.8 GlcNAc-PI de-N-acetylase compare
PS417_03260 -2.6 -1.3 5S ribosomal RNA compare
PS417_22520 -2.5 -1.7 histidine kinase compare
PS417_02880 -2.4 -1.8 copper chaperone compare
PS417_01560 -2.4 -3.4 imidazoleglycerol-phosphate dehydratase compare
PS417_27300 -2.4 -1.3 cell division protein ZapA compare
PS417_00920 -2.3 -6.6 diguanylate cyclase compare
PS417_02720 -2.2 -1.5 TetR family transcriptional regulator compare
PS417_23915 -2.1 -4.2 pantoate--beta-alanine ligase compare
PS417_08220 -2.1 -1.4 epimerase compare
PS417_06680 -2.1 -4.4 nuclease PIN compare
PS417_27040 -2.0 -2.1 3-phosphoglycerate dehydrogenase compare
PS417_26990 -2.0 -1.1 RNA pyrophosphohydrolase compare
PS417_27870 -2.0 -2.7 ATP-dependent DNA helicase RecG compare
PS417_10645 -1.9 -6.1 magnesium ABC transporter ATPase compare
PS417_18310 -1.9 -1.2 hypothetical protein compare
PS417_28050 -1.9 -1.3 hypothetical protein compare
PS417_04590 -1.8 -4.5 methyltransferase compare
PS417_19350 -1.8 -5.4 GTP cyclohydrolase compare
PS417_21480 -1.8 -1.5 23S rRNA pseudouridylate synthase compare
PS417_26730 -1.8 -1.0 pyrroline-5-carboxylate reductase compare
PS417_01185 -1.8 -5.0 ribosomal protein S6 modification protein compare
PS417_22450 -1.8 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_00370 -1.6 -1.3 hypothetical protein compare
PS417_16490 -1.6 -1.0 cell division protein FtsK compare
PS417_22565 -1.6 -0.6 formyltetrahydrofolate deformylase compare
PS417_01600 -1.6 -4.7 peptidase M23 compare
PS417_08125 -1.6 -0.6 prephenate dehydratase compare
PS417_06375 -1.6 -0.6 deoxycytidine triphosphate deaminase compare
PS417_21425 -1.5 -2.5 4-amino-4-deoxychorismate lyase compare
PS417_25720 -1.5 -5.8 anthranilate synthase component II compare
PS417_04585 -1.5 -2.0 hypothetical protein compare
PS417_27195 -1.5 -1.5 N-acetylglutamate synthase compare
PS417_23025 -1.5 -4.0 murein transglycosylase compare
PS417_17215 -1.5 -1.8 peptidylprolyl isomerase compare
PS417_24600 -1.5 -4.9 hydrogenase compare
PS417_23820 -1.4 -4.8 hypothetical protein compare
PS417_27835 -1.4 -5.5 endoribonuclease compare
PS417_18355 -1.4 -5.2 DNA-binding protein compare
PS417_18545 -1.3 -2.5 cell division protein compare
PS417_07120 -1.3 -5.1 RNA polymerase sigma-H factor compare
PS417_20785 -1.3 -2.3 transcriptional regulator compare
PS417_07615 -1.3 -4.6 TetR family transcriptional regulator compare
PS417_00045 -1.3 -1.7 glycerol acyltransferase compare
PS417_07470 -1.2 -1.4 hypothetical protein compare
PS417_00385 -1.2 -1.3 Fur family transcriptional regulator compare
PS417_13510 -1.2 -1.1 polyketide cyclase compare
PS417_24115 -1.2 -1.8 hypothetical protein compare
PS417_04475 -1.2 -3.4 hypothetical protein compare
PS417_27865 -1.2 -2.8 LysR family transcriptional regulator compare
PS417_04595 -1.2 -1.8 cell division protein MraZ compare
PS417_26985 -1.1 -4.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_26770 -1.1 -1.3 tRNA (guanine-N7)-methyltransferase compare
PS417_24605 -1.1 -2.1 thiamine-phosphate pyrophosphorylase compare
PS417_16370 -1.1 -4.8 chemotaxis protein CheY compare
PS417_23545 -1.1 -1.6 gamma-glutamyl kinase compare
PS417_24705 -1.1 -1.2 D-alanyl-D-alanine carboxypeptidase compare
PS417_14940 -1.1 -1.7 LysR family transcriptional regulator compare
PS417_04390 -1.1 -1.5 toluene tolerance protein compare
PS417_13620 -1.1 -2.1 thermostable hemolysin compare
PS417_18540 -1.1 -1.9 colicin V production CvpA compare
PS417_26800 -1.1 -4.6 cell division protein FtsX compare
PS417_19995 -1.1 -5.7 Long-chain fatty acid transport protein compare
PS417_08170 -1.1 -5.7 capsular biosynthesis protein compare
PS417_02950 -1.1 -2.9 tRNA-dihydrouridine synthase B compare
PS417_19425 -1.1 -1.1 allantoicase compare
PS417_10720 -1.1 -5.5 chemotaxis protein CheY compare
PS417_03560 -1.1 -1.2 GTP-binding protein compare
PS417_15110 -1.1 -3.3 protein BatD compare
PS417_09865 -1.0 -1.9 hypothetical protein compare
PS417_05985 -1.0 -1.6 chemotaxis protein CheY compare
PS417_27135 -1.0 -0.7 glutamine synthetase compare
PS417_24710 -1.0 -6.6 lipoprotein compare
PS417_09915 -1.0 -1.7 hypothetical protein compare
PS417_21430 -1.0 -1.1 3-oxoacyl-ACP synthase compare
PS417_26775 -1.0 -2.8 thiazole synthase compare
PS417_24385 -1.0 -3.3 tRNA (uracil-5-)-methyltransferase compare
PS417_09625 -1.0 -2.7 sugar ABC transporter substrate-binding protein compare
PS417_05160 -1.0 -0.8 DNA polymerase III subunit chi compare
PS417_04440 -1.0 -1.9 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_16560 -1.0 -2.6 GNAT family acetyltransferase compare
PS417_27585 -1.0 -0.9 diaminopimelate epimerase compare
PS417_18530 -1.0 -3.3 O-succinylhomoserine sulfhydrylase compare
PS417_26240 -1.0 -1.9 N-methylproline demethylase compare
PS417_13055 -0.9 -1.1 aminotransferase compare
PS417_21105 -0.9 -5.4 aminodeoxychorismate synthase compare
PS417_08200 -0.9 -1.8 hypothetical protein compare
PS417_24615 -0.9 -1.1 hypothetical protein compare
PS417_02555 -0.9 -5.4 exoribonuclease R compare
PS417_11810 -0.9 -1.4 oxidoreductase compare
PS417_03385 -0.9 -1.3 flavin reductase compare
PS417_03705 -0.9 -3.2 2-alkenal reductase compare
PS417_12005 -0.9 -3.0 hypothetical protein compare
PS417_28510 -0.9 -2.8 chromosome partitioning protein compare
PS417_10265 -0.9 -2.5 peptidase compare
PS417_19660 -0.9 -3.9 cobalamin biosynthesis protein CobQ compare
PS417_24525 -0.9 -1.9 nuclease compare
PS417_22575 -0.9 -4.0 exonuclease I compare
PS417_00650 -0.9 -0.8 LysR family transcriptional regulator compare
PS417_24780 -0.9 -5.6 peptidase C13 compare
PS417_03830 -0.8 -4.9 protein disaggregation chaperone compare
PS417_10675 -0.8 -1.0 TetR family transcriptional regulator compare
PS417_09590 -0.8 -3.0 membrane protein compare
PS417_02475 -0.8 -1.9 N-acetylmuramoyl-L-alanine amidase compare
PS417_08225 -0.8 -3.0 acetolactate synthase compare
PS417_27305 -0.8 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
PS417_12310 -0.8 -3.4 methionine synthase compare
PS417_12595 -0.8 -1.4 transcriptional regulator compare
PS417_26525 -0.8 -3.4 DEAD/DEAH box helicase compare
PS417_27640 -0.8 -1.0 TetR family transcriptional regulator compare
PS417_27295 -0.8 -1.8 hypothetical protein compare
PS417_05695 -0.8 -2.6 transcriptional regulator compare
PS417_19655 -0.8 -2.9 chemotaxis protein CheW compare
PS417_13895 -0.8 -2.2 chemotaxis protein CheB compare
PS417_01575 -0.8 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_22405 -0.8 -3.8 7-carboxy-7-deazaguanine synthase compare
PS417_04380 -0.8 -0.6 ABC transporter permease compare
PS417_02385 -0.8 -1.2 esterase compare
PS417_10995 -0.8 -1.8 GntR family transcriptional regulator compare
PS417_27245 -0.8 -1.4 aminotransferase DegT compare
PS417_05100 -0.8 -0.7 RNA polymerase sigma factor compare
PS417_10810 -0.8 -1.6 hypothetical protein compare
PS417_02365 -0.8 -1.6 hypothetical protein compare
PS417_02975 -0.8 -2.8 3-dehydroquinate dehydratase compare
PS417_11020 -0.8 -2.3 L-arabinolactonase (EC 3.1.1.15) (from data) compare
PS417_06825 -0.8 -1.1 hypothetical protein compare
PS417_11925 -0.8 -1.3 hypothetical protein compare
PS417_22400 -0.8 -4.3 7-cyano-7-deazaguanine synthase compare
PS417_27605 -0.7 -3.5 hypothetical protein compare
PS417_15400 -0.7 -1.0 hypothetical protein compare
PS417_28230 -0.7 -1.9 transcriptional regulator compare
PS417_06200 -0.7 -3.2 protein-PII uridylyltransferase compare
PS417_21125 -0.7 -2.5 phosphoadenosine phosphosulfate reductase compare
PS417_19225 -0.7 -4.0 FAD-dependent cmnm(5)s(2)U34 oxidoreductase compare
PS417_22040 -0.7 -2.0 GNAT family acetyltransferase compare
PS417_14420 -0.7 -2.5 acyl-CoA dehydrogenase compare
PS417_01030 -0.7 -1.2 glutamine ABC transporter substrate-binding protein compare
PS417_15510 -0.7 -1.2 hypothetical protein compare
PS417_27715 -0.7 -1.2 Fe-S oxidoreductase compare
PS417_06245 -0.7 -0.9 zinc metallopeptidase RseP compare
PS417_26275 -0.7 -1.4 glycine/betaine ABC transporter substrate-binding protein compare
PS417_04865 -0.7 -2.1 molybdenum cofactor biosynthesis protein MoaC compare
PS417_17240 -0.7 -1.7 trigger factor compare
PS417_01285 -0.7 -0.7 haloacid dehalogenase compare
PS417_20700 -0.7 -3.7 cbb3-type cytochrome c oxidase subunit I compare
PS417_07575 -0.7 -2.2 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_19650 -0.7 -2.3 chemotaxis protein CheW compare
PS417_09595 -0.7 -2.0 membrane protein compare
PS417_01945 -0.7 -1.3 nuclease compare
PS417_13140 -0.7 -1.4 oxidoreductase compare
PS417_08540 -0.7 -1.3 RNA helicase compare
PS417_13640 -0.7 -2.0 ribose ABC transporter permease compare
PS417_08945 -0.7 -3.0 heat shock protein 90 compare
PS417_22530 -0.7 -2.3 hypothetical protein compare
PS417_26155 -0.7 -1.6 hypothetical protein compare
PS417_23135 -0.7 -1.1 GTP-binding protein compare
PS417_02210 -0.7 -2.3 diguanylate cyclase compare
PS417_11725 -0.6 -2.0 peptidase M19 compare
PS417_20875 -0.6 -1.7 chromosome segregation protein SMC compare
PS417_24935 -0.6 -0.7 hypothetical protein compare
PS417_22570 -0.6 -0.6 H-NS histone compare
PS417_17140 -0.6 -1.6 LysR family transcriptional regulator compare
PS417_27125 -0.6 -3.2 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_07695 -0.6 -2.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_06465 -0.6 -2.3 transcriptional regulator compare
PS417_08590 -0.6 -0.9 hypothetical protein compare
PS417_10010 -0.6 -2.0 Replication protein P compare
PS417_02225 -0.6 -1.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_20705 -0.6 -1.6 cbb3-type cytochrome c oxidase subunit II compare
PS417_22380 -0.6 -1.7 hypothetical protein compare
PS417_15955 -0.6 -0.9 secretion protein HylD compare
PS417_21515 -0.6 -3.8 transcriptional regulator compare
PS417_22745 -0.6 -2.4 hypothetical protein compare
PS417_22935 -0.6 -1.8 hypothetical protein compare
PS417_13905 -0.6 -4.0 chemotaxis protein CheY compare
PS417_21600 -0.6 -2.4 pilus assembly protein PilZ compare
PS417_25710 -0.6 -1.0 indole-3-glycerol-phosphate synthase compare
PS417_15885 -0.6 -0.8 GCN5 family acetyltransferase compare
PS417_16720 -0.6 -0.8 membrane protein compare
PS417_27360 -0.6 -3.3 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_27815 -0.6 -0.9 hypothetical protein compare
PS417_25700 -0.6 -1.7 cyclic AMP receptor protein compare
PS417_23095 -0.6 -0.8 exodeoxyribonuclease compare
PS417_05810 -0.6 -2.6 damage-inducible protein CinA compare
PS417_12015 -0.6 -1.2 phosphoglycerate mutase compare
PS417_15865 -0.6 -2.3 hypothetical protein compare
PS417_01855 -0.6 -1.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_08930 -0.6 -1.9 hypothetical protein compare
PS417_04090 -0.6 -2.3 hypothetical protein compare
PS417_09450 -0.6 -2.3 Fis family transcriptional regulator compare
PS417_16640 -0.6 -2.5 toxin compare
PS417_01435 -0.6 -0.9 hypothetical protein compare
PS417_06205 -0.6 -3.6 methionine aminopeptidase compare
PS417_16665 -0.6 -1.2 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For liquid stress 80% Methanol in Pseudomonas simiae WCS417

For liquid stress 80% Methanol across organisms