Experiment set32S515 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 3 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_28070 -7.0 -8.0 phosphate ABC transporter ATP-binding protein compare
PS417_02255 -6.7 -4.2 lipopolysaccharide kinase compare
PS417_28080 -5.9 -12.8 phosphate ABC transporter permease compare
PS417_27865 -5.4 -5.1 LysR family transcriptional regulator compare
PS417_06775 -5.4 -5.6 antibiotic transporter compare
PS417_11460 -5.3 -10.4 divalent metal cation transporter MntH compare
PS417_28085 -5.0 -7.7 phosphate-binding protein compare
PS417_28075 -4.9 -6.6 phosphate ABC transporter permease compare
PS417_00660 -4.5 -5.2 DSBA oxidoreductase compare
PS417_06770 -4.5 -8.8 multidrug transporter compare
PS417_22570 -4.5 -1.6 H-NS histone compare
PS417_08155 -4.4 -2.6 integration host factor subunit beta compare
PS417_27870 -4.3 -3.0 ATP-dependent DNA helicase RecG compare
PS417_01955 -4.3 -12.5 peptidase compare
PS417_10645 -4.1 -10.7 magnesium ABC transporter ATPase compare
PS417_24745 -4.0 -2.8 gamma-glutamyl phosphate reductase compare
PS417_00665 -3.9 -9.1 RND transporter compare
PS417_27195 -3.8 -1.8 N-acetylglutamate synthase compare
PS417_00045 -3.8 -2.3 glycerol acyltransferase compare
PS417_24800 -3.6 -4.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_25405 -3.5 -15.9 catalase compare
PS417_06335 -3.5 -4.6 S-formylglutathione hydrolase compare
PS417_23385 -3.5 -10.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_03830 -3.4 -12.6 protein disaggregation chaperone compare
PS417_26500 -3.4 -3.5 thioesterase compare
PS417_21430 -3.4 -2.3 3-oxoacyl-ACP synthase compare
PS417_16490 -3.3 -1.6 cell division protein FtsK compare
PS417_05365 -3.2 -3.5 FAD-binding protein compare
PS417_28050 -3.1 -2.3 hypothetical protein compare
PS417_23380 -3.1 -3.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_02225 -3.0 -2.7 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_23390 -2.9 -5.3 ubiquinol oxidase subunit II compare
PS417_23375 -2.9 -2.5 cytochrome C oxidase compare
PS417_00655 -2.8 -6.4 DSBA oxidoreductase compare
PS417_23915 -2.8 -3.1 pantoate--beta-alanine ligase compare
PS417_27435 -2.7 -8.8 polyphosphate kinase compare
PS417_01915 -2.7 -0.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_05590 -2.7 -9.2 iron ABC transporter ATP-binding protein compare
PS417_18310 -2.7 -1.6 hypothetical protein compare
PS417_27605 -2.7 -6.5 hypothetical protein compare
PS417_04365 -2.6 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02555 -2.6 -12.2 exoribonuclease R compare
PS417_22445 -2.6 -3.9 ATP-dependent DNA helicase RuvB compare
PS417_06680 -2.5 -5.9 nuclease PIN compare
PS417_14045 -2.5 -7.4 alkyl hydroperoxide reductase compare
PS417_01855 -2.5 -3.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_02510 -2.4 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_22450 -2.3 -1.8 ATP-dependent DNA helicase RuvA compare
PS417_08170 -2.3 -11.0 capsular biosynthesis protein compare
PS417_06330 -2.3 -3.5 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_00650 -2.3 -1.4 LysR family transcriptional regulator compare
PS417_12695 -2.3 -5.8 mannitol dehydrogenase compare
PS417_23370 -2.3 -3.3 protoheme IX farnesyltransferase compare
PS417_05595 -2.3 -8.7 ornithine carbamoyltransferase compare
PS417_08410 -2.2 -2.5 hypothetical protein compare
PS417_26730 -2.2 -1.1 pyrroline-5-carboxylate reductase compare
PS417_06365 -2.2 -7.2 RNA polymerase sigma factor compare
PS417_03625 -2.1 -7.0 lipid A 3-O-deacylase compare
PS417_24585 -2.1 -8.6 AMP nucleosidase compare
PS417_03260 -2.1 -1.4 5S ribosomal RNA compare
PS417_00475 -2.1 -5.1 membrane protein compare
PS417_27295 -2.0 -5.9 hypothetical protein compare
PS417_26365 -2.0 -3.6 EmrB/QacA subfamily drug resistance transporter compare
PS417_08125 -2.0 -0.7 prephenate dehydratase compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_15800 -2.0 -8.4 photosynthetic protein synthase I compare
PS417_22735 -2.0 -9.2 thiol oxidoreductase compare
PS417_00440 -2.0 -6.0 N-acetylmuramoyl-L-alanine amidase compare
PS417_26985 -2.0 -4.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_20855 -1.9 -1.9 hypothetical protein compare
PS417_13870 -1.9 -3.8 hypothetical protein compare
PS417_27245 -1.9 -2.6 aminotransferase DegT compare
PS417_15075 -1.9 -8.7 NAD-glutamate dehydrogenase compare
PS417_27610 -1.9 -3.4 hypothetical protein compare
PS417_04585 -1.8 -1.5 hypothetical protein compare
PS417_01580 -1.8 -2.0 imidazole glycerol phosphate synthase compare
PS417_27300 -1.8 -1.1 cell division protein ZapA compare
PS417_19940 -1.8 -11.5 membrane protein compare
PS417_01560 -1.8 -2.5 imidazoleglycerol-phosphate dehydratase compare
PS417_07140 -1.8 -3.3 peptidase M48 compare
PS417_20130 -1.8 -10.3 dehydrogenase compare
PS417_15805 -1.8 -2.2 transporter compare
PS417_07165 -1.8 -5.8 dihydrodipicolinate synthase compare
PS417_22195 -1.8 -5.9 peptidase compare
PS417_21625 -1.7 -1.4 DNA-binding protein compare
PS417_06325 -1.7 -6.7 LysR family transcriptional regulator compare
PS417_26850 -1.7 -1.2 twin-arginine translocation pathway signal protein compare
PS417_26775 -1.7 -5.9 thiazole synthase compare
PS417_05610 -1.7 -5.0 bacterioferritin compare
PS417_02280 -1.7 -1.5 GlcNAc-PI de-N-acetylase compare
PS417_02975 -1.7 -2.8 3-dehydroquinate dehydratase compare
PS417_02270 -1.7 -4.1 carbamoyltransferase compare
PS417_22740 -1.7 -6.5 imelysin compare
PS417_24615 -1.7 -1.7 hypothetical protein compare
PS417_16370 -1.6 -8.4 chemotaxis protein CheY compare
PS417_09590 -1.6 -3.0 membrane protein compare
PS417_06205 -1.6 -8.4 methionine aminopeptidase compare
PS417_17215 -1.6 -2.6 peptidylprolyl isomerase compare
PS417_03990 -1.6 -10.7 ligand-gated channel protein compare
PS417_09625 -1.6 -2.7 sugar ABC transporter substrate-binding protein compare
PS417_25400 -1.6 -5.8 bacterioferritin compare
PS417_26770 -1.6 -2.5 tRNA (guanine-N7)-methyltransferase compare
PS417_01550 -1.6 -5.3 cell envelope biogenesis protein AsmA compare
PS417_07170 -1.5 -3.6 hypothetical protein compare
PS417_02485 -1.5 -2.8 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_20775 -1.5 -3.6 coproporphyrinogen III oxidase compare
PS417_08580 -1.5 -4.9 histidine kinase compare
PS417_24600 -1.5 -4.9 hydrogenase compare
PS417_22270 -1.5 -4.6 hypothetical protein compare
PS417_07710 -1.5 -3.0 membrane protein compare
PS417_23995 -1.5 -1.0 preprotein translocase subunit SecG compare
PS417_24705 -1.5 -2.3 D-alanyl-D-alanine carboxypeptidase compare
PS417_19350 -1.5 -3.6 GTP cyclohydrolase compare
PS417_04420 -1.5 -7.0 histidinol dehydrogenase compare
PS417_08130 -1.4 -2.3 aspartate aminotransferase compare
PS417_04390 -1.4 -1.4 toluene tolerance protein compare
PS417_02495 -1.4 -4.7 GTPase HflX compare
PS417_04380 -1.4 -1.1 ABC transporter permease compare
PS417_24605 -1.4 -3.9 thiamine-phosphate pyrophosphorylase compare
PS417_22690 -1.4 -3.4 phosphogluconate dehydratase compare
PS417_27640 -1.4 -1.4 TetR family transcriptional regulator compare
PS417_08420 -1.4 -4.4 lipoprotein compare
PS417_02175 -1.4 -3.4 transcriptional regulator compare
PS417_09600 -1.4 -3.1 glycosyl transferase family 1 compare
PS417_10720 -1.4 -5.9 chemotaxis protein CheY compare
PS417_23900 -1.3 -7.7 poly(A) polymerase compare
PS417_19285 -1.3 -2.0 ankyrin compare
PS417_05210 -1.3 -6.6 copper oxidase compare
PS417_05165 -1.3 -2.8 cytosol aminopeptidase compare
PS417_08665 -1.3 -3.2 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_07550 -1.3 -7.1 lytic transglycosylase compare
PS417_22620 -1.3 -2.3 pyruvate kinase compare
PS417_01575 -1.3 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_16980 -1.3 -4.6 exonuclease III compare
PS417_02475 -1.3 -2.6 N-acetylmuramoyl-L-alanine amidase compare
PS417_19480 -1.3 -5.4 aminopeptidase compare
PS417_16160 -1.3 -2.0 ABC transporter substrate-binding protein compare
PS417_04305 -1.2 -1.4 aspartate ammonia-lyase compare
PS417_04595 -1.2 -1.8 cell division protein MraZ compare
PS417_27255 -1.2 -6.0 glycine cleavage system protein T compare
PS417_24885 -1.2 -5.3 transcriptional regulator compare
PS417_04865 -1.2 -1.9 molybdenum cofactor biosynthesis protein MoaC compare
PS417_01565 -1.2 -4.8 imidazole glycerol phosphate synthase compare
PS417_11925 -1.2 -1.4 hypothetical protein compare
PS417_05325 -1.2 -1.6 fimbrial protein compare
PS417_27425 -1.2 -4.9 exopolyphosphatase compare
PS417_22745 -1.2 -5.4 hypothetical protein compare
PS417_09325 -1.2 -3.4 peptidase S41 compare
PS417_11705 -1.2 -5.4 cyclic peptide transporter compare
PS417_09615 -1.2 -3.9 glycosyl transferase family 1 compare
PS417_01920 -1.2 -1.0 ATP-dependent protease subunit HslV compare
PS417_22535 -1.2 -4.0 ornithine acetyltransferase compare
PS417_08415 -1.2 -7.5 hypothetical protein compare
PS417_07565 -1.1 -1.5 hypothetical protein compare
PS417_22775 -1.1 -4.2 histidine kinase compare
PS417_07510 -1.1 -4.4 aspartyl beta-hydroxylase compare
PS417_19955 -1.1 -0.9 hypothetical protein compare
PS417_06530 -1.1 -2.1 membrane protein compare
PS417_16360 -1.1 -2.3 histidine kinase compare
PS417_13620 -1.1 -2.1 thermostable hemolysin compare
PS417_18355 -1.1 -5.9 DNA-binding protein compare
PS417_21425 -1.1 -1.8 4-amino-4-deoxychorismate lyase compare
PS417_01950 -1.1 -3.1 malate dehydrogenase compare
PS417_26990 -1.1 -0.6 RNA pyrophosphohydrolase compare
PS417_22065 -1.1 -5.1 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_12585 -1.1 -4.4 acriflavine resistance protein B compare
PS417_13885 -1.1 -1.6 chemotaxis protein CheY compare
PS417_26645 -1.1 -2.4 chemotaxis protein compare
PS417_02990 -1.0 -1.7 hypothetical protein compare
PS417_01590 -1.0 -1.8 polysaccharide deacetylase compare
PS417_28010 -1.0 -2.6 pyridine nucleotide-disulfide oxidoreductase compare
PS417_04415 -1.0 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_07305 -1.0 -1.2 3-beta hydroxysteroid dehydrogenase compare
PS417_27185 -1.0 -6.4 porin compare
PS417_03000 -1.0 -2.7 translation initiation factor Sui1 compare
PS417_28515 -1.0 -2.7 16S rRNA methyltransferase compare
PS417_03965 -1.0 -4.3 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
PS417_22530 -1.0 -4.0 hypothetical protein compare
PS417_03300 -1.0 -2.7 alanine acetyltransferase compare
PS417_25270 -1.0 -1.9 NrdR family transcriptional regulator compare
PS417_09595 -1.0 -4.1 membrane protein compare
PS417_06370 -1.0 -1.3 cold-shock protein compare
PS417_27535 -1.0 -5.4 chemotaxis protein CheY compare
PS417_06895 -1.0 -2.0 DNA-binding protein compare
PS417_03785 -1.0 -1.4 pilus assembly protein PilV compare
PS417_09620 -1.0 -5.7 lipopolysaccharide biosynthesis protein compare
PS417_16310 -1.0 -2.5 membrane protein compare
PS417_14125 -1.0 -3.7 molybdenum ABC transporter ATP-binding protein compare
PS417_05650 -1.0 -2.8 leucyl-tRNA synthetase compare
PS417_21480 -1.0 -1.1 23S rRNA pseudouridylate synthase compare
PS417_22795 -0.9 -1.5 exclusion suppressor FxsA compare
PS417_16390 -0.9 -4.1 peroxiredoxin compare
PS417_18425 -0.9 -1.2 sporulation protein compare
PS417_27125 -0.9 -5.4 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_23545 -0.9 -1.5 gamma-glutamyl kinase compare
PS417_05885 -0.9 -3.1 potassium transporter Kup compare
PS417_02480 -0.9 -3.5 DNA mismatch repair protein compare
PS417_24680 -0.9 -6.5 murein transglycosylase compare
PS417_12655 -0.9 -2.3 methionine aminopeptidase compare
PS417_11945 -0.9 -1.9 hypothetical protein compare


Specific Phenotypes

For 23 genes in this experiment

For solid stress Fraxetin in Pseudomonas simiae WCS417

For solid stress Fraxetin across organisms