Experiment set32S515 for Pseudomonas simiae WCS417

Fraxetin 3 mM; solid stress

Group: solid stress
Media: + Fraxetin (3 mM)
Culturing: fluoroDangl_ML3b
By: Max Stassen on 29-Mar-24

Specific Phenotypes

For 23 genes in this experiment

For solid stress Fraxetin in Pseudomonas simiae WCS417

For solid stress Fraxetin across organisms

SEED Subsystems

Subsystem	#Specific
Iron acquisition in Vibrio	4
Transport of Iron	3
Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria	2
Photorespiration (oxidative C2 cycle)	2
Biogenesis of cytochrome c oxidases	1
Copper homeostasis	1
DNA repair, bacterial	1
Glutamate dehydrogenases	1
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis	1
Glutathione-dependent pathway of formaldehyde detoxification	1
Glycine and Serine Utilization	1
Glycine cleavage system	1
Lipid A modifications	1
Oxidative stress	1
Transport of Manganese	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Nitrogen metabolism
• Ascorbate and aldarate metabolism
• Ubiquinone and menaquinone biosynthesis
• Puromycin biosynthesis
• Glutamate metabolism
• Glycine, serine and threonine metabolism
• Arginine and proline metabolism
• Tryptophan metabolism
• Nucleotide sugars metabolism
• Glycosaminoglycan degradation
• Lipopolysaccharide biosynthesis
• One carbon pool by folate
• Methane metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-glutamate degradation I	1	1	1
superoxide radicals degradation	2	2	1
methanol oxidation to formaldehyde IV	2	1	1
L-alanine degradation II (to D-lactate)	3	3	1
ethanol degradation IV	3	3	1
glycine cleavage	3	3	1
glycine degradation	3	3	1
glycine biosynthesis II	3	3	1
ethene biosynthesis IV (engineered)	3	1	1
reactive oxygen species degradation	4	4	1
L-glutamate degradation XI (reductive Stickland reaction)	7	3	1
4-aminobutanoate degradation V	7	2	1
folate transformations III (E. coli)	9	9	1
photorespiration I	9	5	1
photorespiration III	9	5	1
reductive glycine pathway of autotrophic CO2 fixation	9	5	1
peptidoglycan recycling II	10	8	1
photorespiration II	10	6	1
L-glutamate degradation V (via hydroxyglutarate)	10	6	1
folate transformations II (plants)	11	10	1
folate transformations I	13	9	1
peptidoglycan recycling I	14	11	1
methylaspartate cycle	19	10	1