Experiment set32S514 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 2 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_28070 -7.7 -9.2 phosphate ABC transporter ATP-binding protein compare
PS417_00045 -6.5 -2.3 glycerol acyltransferase compare
PS417_06335 -6.2 -4.3 S-formylglutathione hydrolase compare
PS417_28080 -5.3 -13.7 phosphate ABC transporter permease compare
PS417_00650 -5.0 -1.8 LysR family transcriptional regulator compare
PS417_27865 -5.0 -3.3 LysR family transcriptional regulator compare
PS417_10645 -4.9 -10.1 magnesium ABC transporter ATPase compare
PS417_28085 -4.6 -10.6 phosphate-binding protein compare
PS417_06775 -4.6 -5.8 antibiotic transporter compare
PS417_06770 -4.6 -8.3 multidrug transporter compare
PS417_23915 -4.2 -4.8 pantoate--beta-alanine ligase compare
PS417_27195 -3.9 -1.9 N-acetylglutamate synthase compare
PS417_22450 -3.8 -2.3 ATP-dependent DNA helicase RuvA compare
PS417_28075 -3.6 -5.9 phosphate ABC transporter permease compare
PS417_23380 -3.6 -3.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_21430 -3.5 -2.4 3-oxoacyl-ACP synthase compare
PS417_27605 -3.3 -9.8 hypothetical protein compare
PS417_05365 -3.3 -3.6 FAD-binding protein compare
PS417_28050 -3.3 -2.4 hypothetical protein compare
PS417_26500 -3.3 -4.1 thioesterase compare
PS417_06680 -3.3 -5.0 nuclease PIN compare
PS417_03830 -3.2 -9.6 protein disaggregation chaperone compare
PS417_02485 -3.1 -4.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_23995 -2.9 -1.4 preprotein translocase subunit SecG compare
PS417_00655 -2.8 -6.2 DSBA oxidoreductase compare
PS417_02555 -2.7 -11.6 exoribonuclease R compare
PS417_25405 -2.7 -13.0 catalase compare
PS417_23375 -2.7 -2.6 cytochrome C oxidase compare
PS417_14045 -2.6 -6.7 alkyl hydroperoxide reductase compare
PS417_02255 -2.6 -3.4 lipopolysaccharide kinase compare
PS417_05590 -2.5 -9.7 iron ABC transporter ATP-binding protein compare
PS417_04380 -2.5 -1.5 ABC transporter permease compare
PS417_04385 -2.5 -2.4 organic solvent ABC transporter substrate-binding protein compare
PS417_00665 -2.5 -6.2 RND transporter compare
PS417_02280 -2.5 -1.5 GlcNAc-PI de-N-acetylase compare
PS417_26990 -2.4 -1.2 RNA pyrophosphohydrolase compare
PS417_00660 -2.4 -3.7 DSBA oxidoreductase compare
PS417_02270 -2.4 -3.8 carbamoyltransferase compare
PS417_16490 -2.4 -1.7 cell division protein FtsK compare
PS417_05975 -2.3 -1.2 chemotaxis protein CheW compare
PS417_12595 -2.3 -2.9 transcriptional regulator compare
PS417_26730 -2.2 -1.1 pyrroline-5-carboxylate reductase compare
PS417_01565 -2.2 -4.4 imidazole glycerol phosphate synthase compare
PS417_23370 -2.2 -4.6 protoheme IX farnesyltransferase compare
PS417_06365 -2.2 -7.8 RNA polymerase sigma factor compare
PS417_05595 -2.2 -6.8 ornithine carbamoyltransferase compare
PS417_05885 -2.2 -8.3 potassium transporter Kup compare
PS417_11460 -2.2 -7.0 divalent metal cation transporter MntH compare
PS417_20130 -2.2 -14.4 dehydrogenase compare
PS417_23385 -2.2 -8.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_24800 -2.1 -7.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_01560 -2.1 -1.9 imidazoleglycerol-phosphate dehydratase compare
PS417_27870 -2.1 -3.1 ATP-dependent DNA helicase RecG compare
PS417_07710 -2.1 -2.9 membrane protein compare
PS417_23390 -2.1 -7.6 ubiquinol oxidase subunit II compare
PS417_04390 -2.1 -2.4 toluene tolerance protein compare
PS417_26775 -2.1 -7.2 thiazole synthase compare
PS417_07615 -2.1 -7.0 TetR family transcriptional regulator compare
PS417_08125 -2.1 -0.7 prephenate dehydratase compare
PS417_01855 -2.0 -3.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_22565 -2.0 -0.7 formyltetrahydrofolate deformylase compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_26985 -2.0 -5.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_04420 -2.0 -8.6 histidinol dehydrogenase compare
PS417_21515 -2.0 -10.2 transcriptional regulator compare
PS417_27435 -2.0 -7.5 polyphosphate kinase compare
PS417_01955 -1.9 -10.9 peptidase compare
PS417_02975 -1.9 -3.7 3-dehydroquinate dehydratase compare
PS417_02510 -1.9 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_21480 -1.9 -1.6 23S rRNA pseudouridylate synthase compare
PS417_08170 -1.9 -9.8 capsular biosynthesis protein compare
PS417_06895 -1.9 -3.6 DNA-binding protein compare
PS417_11945 -1.9 -3.2 hypothetical protein compare
PS417_24605 -1.8 -3.3 thiamine-phosphate pyrophosphorylase compare
PS417_02385 -1.8 -2.1 esterase compare
PS417_04365 -1.7 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_12695 -1.7 -5.4 mannitol dehydrogenase compare
PS417_01580 -1.7 -2.0 imidazole glycerol phosphate synthase compare
PS417_10720 -1.7 -4.7 chemotaxis protein CheY compare
PS417_02880 -1.7 -1.8 copper chaperone compare
PS417_22735 -1.7 -7.3 thiol oxidoreductase compare
PS417_24615 -1.7 -1.8 hypothetical protein compare
PS417_00440 -1.6 -5.7 N-acetylmuramoyl-L-alanine amidase compare
PS417_18310 -1.6 -1.0 hypothetical protein compare
PS417_19350 -1.6 -5.5 GTP cyclohydrolase compare
PS417_01575 -1.6 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_22745 -1.6 -6.3 hypothetical protein compare
PS417_09600 -1.5 -4.6 glycosyl transferase family 1 compare
PS417_06330 -1.5 -3.6 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_18355 -1.5 -7.8 DNA-binding protein compare
PS417_09615 -1.5 -5.1 glycosyl transferase family 1 compare
PS417_27610 -1.5 -8.8 hypothetical protein compare
PS417_22740 -1.5 -7.8 imelysin compare
PS417_10245 -1.5 -2.5 hypothetical protein compare
PS417_08410 -1.5 -2.0 hypothetical protein compare
PS417_22935 -1.4 -2.8 hypothetical protein compare
PS417_27795 -1.4 -0.7 orotate phosphoribosyltransferase compare
PS417_12655 -1.4 -3.2 methionine aminopeptidase compare
PS417_11400 -1.4 -1.5 phosphoglycerate mutase compare
PS417_16370 -1.4 -8.2 chemotaxis protein CheY compare
PS417_21320 -1.4 -3.4 transcriptional regulator compare
PS417_09590 -1.4 -3.4 membrane protein compare
PS417_23900 -1.4 -5.5 poly(A) polymerase compare
PS417_04440 -1.3 -2.5 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_03300 -1.3 -2.8 alanine acetyltransferase compare
PS417_25400 -1.3 -5.5 bacterioferritin compare
PS417_09325 -1.3 -4.7 peptidase S41 compare
PS417_07640 -1.3 -3.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_05815 -1.3 -3.8 recombinase RecA compare
PS417_23810 -1.3 -7.0 acetolactate synthase 3 catalytic subunit compare
PS417_13510 -1.3 -1.2 polyketide cyclase compare
PS417_07565 -1.3 -2.1 hypothetical protein compare
PS417_19645 -1.3 -2.0 chemotaxis protein compare
PS417_24745 -1.3 -2.2 gamma-glutamyl phosphate reductase compare
PS417_25720 -1.3 -8.2 anthranilate synthase component II compare
PS417_24585 -1.3 -7.3 AMP nucleosidase compare
PS417_22195 -1.3 -3.8 peptidase compare
PS417_13870 -1.3 -2.5 hypothetical protein compare
PS417_00475 -1.3 -4.5 membrane protein compare
PS417_27245 -1.2 -2.3 aminotransferase DegT compare
PS417_22775 -1.2 -5.5 histidine kinase compare
PS417_01605 -1.2 -1.2 phosphoglycerate mutase compare
PS417_05210 -1.2 -4.4 copper oxidase compare
PS417_20775 -1.2 -2.4 coproporphyrinogen III oxidase compare
PS417_03990 -1.2 -8.6 ligand-gated channel protein compare
PS417_13885 -1.2 -2.4 chemotaxis protein CheY compare
PS417_22620 -1.2 -3.4 pyruvate kinase compare
PS417_21425 -1.2 -2.2 4-amino-4-deoxychorismate lyase compare
PS417_15800 -1.2 -6.1 photosynthetic protein synthase I compare
PS417_12355 -1.2 -2.4 magnesium chelatase compare
PS417_09595 -1.1 -4.0 membrane protein compare
PS417_09625 -1.1 -1.7 sugar ABC transporter substrate-binding protein compare
PS417_24370 -1.1 -0.9 (2Fe-2S)-binding protein compare
PS417_01550 -1.1 -5.4 cell envelope biogenesis protein AsmA compare
PS417_22270 -1.1 -3.2 hypothetical protein compare
PS417_21105 -1.1 -5.6 aminodeoxychorismate synthase compare
PS417_05105 -1.1 -3.0 membrane protein compare
PS417_22570 -1.1 -0.8 H-NS histone compare
PS417_23950 -1.1 -1.0 polynucleotide phosphorylase/polyadenylase compare
PS417_12755 -1.1 -1.9 RND transporter compare
PS417_11940 -1.1 -6.4 TonB-dependent receptor compare
PS417_19425 -1.1 -1.1 allantoicase compare
PS417_12795 -1.1 -5.4 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_19705 -1.1 -2.0 flagellar biosynthesis regulator FlhF compare
PS417_01620 -1.1 -1.3 preprotein translocase subunit SecB compare
PS417_03625 -1.0 -6.2 lipid A 3-O-deacylase compare
PS417_15075 -1.0 -5.5 NAD-glutamate dehydrogenase compare
PS417_06200 -1.0 -4.8 protein-PII uridylyltransferase compare
PS417_22445 -1.0 -1.8 ATP-dependent DNA helicase RuvB compare
PS417_16310 -1.0 -3.7 membrane protein compare
PS417_27295 -1.0 -2.9 hypothetical protein compare
PS417_06205 -1.0 -6.5 methionine aminopeptidase compare
PS417_24705 -1.0 -2.2 D-alanyl-D-alanine carboxypeptidase compare
PS417_22535 -1.0 -5.5 ornithine acetyltransferase compare
PS417_24570 -1.0 -3.2 AsnC family transcriptional regulator compare
PS417_08990 -1.0 -2.4 ABC transporter substrate-binding protein compare
PS417_06325 -1.0 -4.1 LysR family transcriptional regulator compare
PS417_03000 -1.0 -3.4 translation initiation factor Sui1 compare
PS417_24600 -0.9 -3.3 hydrogenase compare
PS417_21090 -0.9 -2.6 hypothetical protein compare
PS417_26995 -0.9 -4.1 phosphoserine phosphatase compare
PS417_09635 -0.9 -5.7 mannose-1-phosphate guanylyltransferase compare
PS417_08135 -0.9 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_09695 -0.9 -1.9 hydrolase compare
PS417_04590 -0.9 -2.9 methyltransferase compare
PS417_04270 -0.9 -3.9 ribonuclease G compare
PS417_04865 -0.9 -1.2 molybdenum cofactor biosynthesis protein MoaC compare
PS417_09630 -0.9 -3.5 glycosyl transferase compare
PS417_04415 -0.9 -4.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_03260 -0.9 -0.9 5S ribosomal RNA compare
PS417_19285 -0.9 -1.4 ankyrin compare
PS417_23805 -0.9 -2.1 acetolactate synthase 3 regulatory subunit compare
PS417_11705 -0.9 -3.5 cyclic peptide transporter compare
PS417_25710 -0.9 -1.4 indole-3-glycerol-phosphate synthase compare
PS417_26605 -0.8 -1.1 malonate decarboxylase subunit beta compare
PS417_27815 -0.8 -0.9 hypothetical protein compare
PS417_09620 -0.8 -4.9 lipopolysaccharide biosynthesis protein compare
PS417_14040 -0.8 -3.6 alkyl hydroperoxide reductase compare
PS417_21055 -0.8 -2.5 threonyl-tRNA synthetase compare
PS417_24630 -0.8 -2.9 ATP-binding protein compare
PS417_27515 -0.8 -1.9 heme biosynthesis protein HemY compare
PS417_18965 -0.8 -1.7 dienelactone hydrolase compare
PS417_09575 -0.8 -1.3 glutathione S-transferase compare
PS417_21495 -0.8 -3.0 lipoprotein compare
PS417_04650 -0.8 -0.4 D-alanine--D-alanine ligase compare
PS417_27785 -0.8 -4.1 phosphoglucomutase compare
PS417_07170 -0.8 -2.7 hypothetical protein compare
PS417_27255 -0.8 -4.0 glycine cleavage system protein T compare
PS417_05615 -0.8 -3.9 (2Fe-2S)-binding protein compare
PS417_01145 -0.8 -0.8 taurine transporter ATP-binding subunit compare
PS417_12660 -0.8 -1.4 hypothetical protein compare
PS417_22690 -0.8 -2.1 phosphogluconate dehydratase compare
PS417_27835 -0.8 -3.2 endoribonuclease compare
PS417_22575 -0.8 -3.8 exonuclease I compare
PS417_18205 -0.8 -1.8 aldehyde dehydrogenase compare
PS417_17000 -0.8 -2.4 MerR family transcriptional regulator compare
PS417_27425 -0.8 -4.0 exopolyphosphatase compare
PS417_16360 -0.8 -2.8 histidine kinase compare
PS417_12310 -0.8 -4.1 methionine synthase compare
PS417_16560 -0.8 -2.3 GNAT family acetyltransferase compare


Specific Phenotypes

For 12 genes in this experiment

For solid stress Fraxetin in Pseudomonas simiae WCS417

For solid stress Fraxetin across organisms