Experiment set32S513 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 1 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_27865 -5.0 -5.1 LysR family transcriptional regulator compare
PS417_23915 -4.3 -6.0 pantoate--beta-alanine ligase compare
PS417_03560 -3.9 -2.6 GTP-binding protein compare
PS417_27795 -3.3 -1.1 orotate phosphoribosyltransferase compare
PS417_28070 -3.1 -8.9 phosphate ABC transporter ATP-binding protein compare
PS417_28050 -3.0 -2.5 hypothetical protein compare
PS417_27870 -2.9 -3.4 ATP-dependent DNA helicase RecG compare
PS417_04365 -2.8 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_06680 -2.7 -6.5 nuclease PIN compare
PS417_21480 -2.7 -2.0 23S rRNA pseudouridylate synthase compare
PS417_04380 -2.6 -1.5 ABC transporter permease compare
PS417_10645 -2.6 -6.7 magnesium ABC transporter ATPase compare
PS417_22450 -2.5 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_28080 -2.5 -11.1 phosphate ABC transporter permease compare
PS417_23375 -2.5 -2.6 cytochrome C oxidase compare
PS417_02280 -2.5 -1.8 GlcNAc-PI de-N-acetylase compare
PS417_02255 -2.2 -4.4 lipopolysaccharide kinase compare
PS417_02270 -2.2 -3.8 carbamoyltransferase compare
PS417_02555 -2.2 -10.1 exoribonuclease R compare
PS417_07710 -2.1 -3.2 membrane protein compare
PS417_22565 -2.1 -0.7 formyltetrahydrofolate deformylase compare
PS417_08125 -2.1 -0.7 prephenate dehydratase compare
PS417_06375 -2.1 -0.7 deoxycytidine triphosphate deaminase compare
PS417_10245 -2.0 -2.3 hypothetical protein compare
PS417_23805 -2.0 -5.7 acetolactate synthase 3 regulatory subunit compare
PS417_13510 -2.0 -1.5 polyketide cyclase compare
PS417_06245 -2.0 -1.9 zinc metallopeptidase RseP compare
PS417_05365 -1.9 -2.0 FAD-binding protein compare
PS417_09210 -1.8 -2.5 TetR family transcriptional regulator compare
PS417_01605 -1.8 -1.6 phosphoglycerate mutase compare
PS417_03260 -1.8 -1.4 5S ribosomal RNA compare
PS417_23810 -1.8 -8.2 acetolactate synthase 3 catalytic subunit compare
PS417_03830 -1.8 -9.3 protein disaggregation chaperone compare
PS417_26420 -1.7 -2.1 hypothetical protein compare
PS417_00650 -1.6 -1.2 LysR family transcriptional regulator compare
PS417_22570 -1.6 -1.1 H-NS histone compare
PS417_04385 -1.6 -2.3 organic solvent ABC transporter substrate-binding protein compare
PS417_14045 -1.6 -4.2 alkyl hydroperoxide reductase compare
PS417_23370 -1.6 -4.0 protoheme IX farnesyltransferase compare
PS417_26775 -1.6 -8.4 thiazole synthase compare
PS417_24600 -1.5 -4.9 hydrogenase compare
PS417_09590 -1.5 -6.1 membrane protein compare
PS417_02975 -1.5 -4.8 3-dehydroquinate dehydratase compare
PS417_11705 -1.4 -7.6 cyclic peptide transporter compare
PS417_23390 -1.4 -6.1 ubiquinol oxidase subunit II compare
PS417_08170 -1.4 -7.6 capsular biosynthesis protein compare
PS417_00180 -1.4 -2.4 tryptophan synthase subunit alpha compare
PS417_06895 -1.4 -3.8 DNA-binding protein compare
PS417_21625 -1.4 -1.2 DNA-binding protein compare
PS417_02485 -1.4 -2.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_23995 -1.4 -1.0 preprotein translocase subunit SecG compare
PS417_24605 -1.4 -3.5 thiamine-phosphate pyrophosphorylase compare
PS417_26985 -1.4 -4.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_18310 -1.3 -0.8 hypothetical protein compare
PS417_28085 -1.3 -9.8 phosphate-binding protein compare
PS417_00655 -1.3 -6.8 DSBA oxidoreductase compare
PS417_00385 -1.3 -1.4 Fur family transcriptional regulator compare
PS417_06770 -1.3 -4.6 multidrug transporter compare
PS417_23385 -1.3 -6.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_06335 -1.3 -2.9 S-formylglutathione hydrolase compare
PS417_01580 -1.3 -1.2 imidazole glycerol phosphate synthase compare
PS417_19350 -1.3 -5.0 GTP cyclohydrolase compare
PS417_00665 -1.3 -6.8 RND transporter compare
PS417_15075 -1.2 -6.5 NAD-glutamate dehydrogenase compare
PS417_28075 -1.2 -2.9 phosphate ABC transporter permease compare
PS417_00045 -1.2 -1.6 glycerol acyltransferase compare
PS417_27195 -1.2 -1.2 N-acetylglutamate synthase compare
PS417_01270 -1.2 -1.9 iron ABC transporter substrate-binding protein compare
PS417_16560 -1.2 -2.9 GNAT family acetyltransferase compare
PS417_05590 -1.2 -6.9 iron ABC transporter ATP-binding protein compare
PS417_05815 -1.2 -4.2 recombinase RecA compare
PS417_27605 -1.1 -4.5 hypothetical protein compare
PS417_19850 -1.1 -5.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_24745 -1.1 -2.3 gamma-glutamyl phosphate reductase compare
PS417_26730 -1.1 -0.7 pyrroline-5-carboxylate reductase compare
PS417_26500 -1.1 -4.9 thioesterase compare
PS417_26900 -1.1 -1.8 L-cystine transporter tcyP compare
PS417_19955 -1.1 -1.4 hypothetical protein compare
PS417_01915 -1.1 -0.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_04390 -1.1 -2.6 toluene tolerance protein compare
PS417_27290 -1.1 -2.0 hypothetical protein compare
PS417_06775 -1.0 -4.5 antibiotic transporter compare
PS417_05985 -1.0 -2.3 chemotaxis protein CheY compare
PS417_21425 -1.0 -1.6 4-amino-4-deoxychorismate lyase compare
PS417_21655 -1.0 -1.2 aspartate kinase compare
PS417_07615 -1.0 -3.9 TetR family transcriptional regulator compare
PS417_27315 -1.0 -1.3 hypothetical protein compare
PS417_01855 -1.0 -2.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_26530 -1.0 -1.3 hypothetical protein compare
PS417_00660 -1.0 -2.1 DSBA oxidoreductase compare
PS417_20340 -1.0 -2.0 hypothetical protein compare
PS417_23910 -1.0 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_22195 -0.9 -5.0 peptidase compare
PS417_02865 -0.9 -2.8 peptidase compare
PS417_23950 -0.9 -1.1 polynucleotide phosphorylase/polyadenylase compare
PS417_22620 -0.9 -2.5 pyruvate kinase compare
PS417_05595 -0.9 -6.0 ornithine carbamoyltransferase compare
PS417_09600 -0.9 -3.1 glycosyl transferase family 1 compare
PS417_27705 -0.9 -1.4 amino acid dehydrogenase compare
PS417_25405 -0.9 -5.6 catalase compare
PS417_06365 -0.9 -4.8 RNA polymerase sigma factor compare
PS417_09595 -0.9 -3.7 membrane protein compare
PS417_21430 -0.9 -1.1 3-oxoacyl-ACP synthase compare
PS417_12655 -0.9 -2.6 methionine aminopeptidase compare
PS417_27245 -0.9 -1.8 aminotransferase DegT compare
PS417_16360 -0.9 -4.2 histidine kinase compare
PS417_16490 -0.9 -0.8 cell division protein FtsK compare
PS417_27425 -0.9 -4.3 exopolyphosphatase compare
PS417_15705 -0.9 -1.9 nitrate reductase compare
PS417_07640 -0.9 -2.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_23380 -0.9 -1.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_04585 -0.9 -1.1 hypothetical protein compare
PS417_12245 -0.9 -1.6 GNAT family acetyltransferase compare
PS417_03100 -0.9 -0.9 pilus assembly protein compare
PS417_02510 -0.9 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_11940 -0.9 -5.8 TonB-dependent receptor compare
PS417_19675 -0.9 -3.1 chemotaxis protein CheY compare
PS417_04650 -0.8 -0.4 D-alanine--D-alanine ligase compare
PS417_15805 -0.8 -1.4 transporter compare
PS417_22735 -0.8 -5.4 thiol oxidoreductase compare
PS417_22445 -0.8 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_16520 -0.8 -1.7 cold-shock protein compare
PS417_09625 -0.8 -2.3 sugar ABC transporter substrate-binding protein compare
PS417_21515 -0.8 -5.1 transcriptional regulator compare
PS417_01115 -0.8 -1.3 serine acetyltransferase compare
PS417_25720 -0.8 -4.1 anthranilate synthase component II compare
PS417_00475 -0.8 -3.9 membrane protein compare
PS417_26685 -0.8 -2.1 hypothetical protein compare
PS417_19835 -0.8 -1.5 flagellar biosynthesis protein FliS compare
PS417_19755 -0.8 -1.5 flagellar motor switch protein FliM compare
PS417_18355 -0.8 -5.3 DNA-binding protein compare
PS417_27435 -0.8 -3.9 polyphosphate kinase compare
PS417_20985 -0.8 -0.5 porin compare
PS417_24935 -0.8 -0.9 hypothetical protein compare
PS417_05210 -0.8 -3.3 copper oxidase compare
PS417_12595 -0.8 -1.7 transcriptional regulator compare
PS417_04080 -0.8 -1.8 peptide ABC transporter substrate-binding protein compare
PS417_06685 -0.8 -0.7 beta-ketoadipyl CoA thiolase compare
PS417_02575 -0.8 -1.9 membrane protein compare
PS417_25400 -0.7 -3.9 bacterioferritin compare
PS417_19665 -0.7 -2.2 flagellar motor protein MotD compare
PS417_15200 -0.7 -2.3 protein activator of alkane oxidation PraB compare
PS417_10860 -0.7 -1.7 flagellar basal body rod protein FlgG compare
PS417_22535 -0.7 -3.2 ornithine acetyltransferase compare
PS417_10840 -0.7 -2.1 amidase compare
PS417_03990 -0.7 -5.1 ligand-gated channel protein compare
PS417_03000 -0.7 -1.7 translation initiation factor Sui1 compare
PS417_15800 -0.7 -3.5 photosynthetic protein synthase I compare
PS417_27610 -0.7 -3.3 hypothetical protein compare
PS417_23625 -0.7 -2.2 LysR family transcriptional regulator compare
PS417_05560 -0.7 -1.7 ABC transporter compare
PS417_26465 -0.7 -1.8 hypothetical protein compare
PS417_04420 -0.7 -4.2 histidinol dehydrogenase compare
PS417_08410 -0.7 -1.4 hypothetical protein compare
PS417_04440 -0.7 -1.1 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_19860 -0.7 -5.8 flagellar hook protein FlgL compare
PS417_23360 -0.7 -0.8 hypothetical protein compare
PS417_23900 -0.7 -3.8 poly(A) polymerase compare
PS417_27105 -0.7 -2.7 spermidine/putrescine ABC transporter permease compare
PS417_16555 -0.7 -0.9 cupin compare
PS417_19800 -0.7 -2.1 flagellar motor switch protein FliG compare
PS417_08155 -0.7 -0.6 integration host factor subunit beta compare
PS417_05695 -0.7 -2.0 transcriptional regulator compare
PS417_19840 -0.7 -4.8 flagellar cap protein FliD compare
PS417_06540 -0.7 -1.2 membrane protein compare
PS417_11460 -0.7 -2.4 divalent metal cation transporter MntH compare
PS417_28515 -0.7 -1.1 16S rRNA methyltransferase compare
PS417_14515 -0.6 -1.1 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_01575 -0.6 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18780 -0.6 -1.1 flavin reductase compare
PS417_21105 -0.6 -4.2 aminodeoxychorismate synthase compare
PS417_15770 -0.6 -0.9 pyridoxine 5'-phosphate oxidase compare
PS417_22935 -0.6 -1.9 hypothetical protein compare
PS417_08580 -0.6 -1.6 histidine kinase compare
PS417_15095 -0.6 -1.2 hypothetical protein compare
PS417_19790 -0.6 -2.7 ATP synthase compare
PS417_26365 -0.6 -1.7 EmrB/QacA subfamily drug resistance transporter compare
PS417_01560 -0.6 -1.2 imidazoleglycerol-phosphate dehydratase compare
PS417_07695 -0.6 -2.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_21235 -0.6 -2.6 transglutaminase compare
PS417_12795 -0.6 -4.2 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_12855 -0.6 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21570 -0.6 -4.5 flagellar basal body rod protein FlgB compare
PS417_17405 -0.6 -1.0 AraC family transcriptional regulator compare
PS417_25700 -0.6 -1.9 cyclic AMP receptor protein compare
PS417_09160 -0.6 -1.7 GNAT family acetyltransferase compare
PS417_11720 -0.6 -1.3 class V aminotransferase compare
PS417_03300 -0.6 -1.6 alanine acetyltransferase compare
PS417_19740 -0.6 -3.1 flagellar biosynthesis protein flip compare
PS417_07565 -0.6 -0.9 hypothetical protein compare
PS417_01565 -0.6 -1.6 imidazole glycerol phosphate synthase compare
PS417_00825 -0.6 -1.3 recombinase RecF compare
PS417_23575 -0.6 -1.8 hypothetical protein compare
PS417_08050 -0.6 -2.1 amino acid amidase compare
PS417_01545 -0.6 -2.2 adenine glycosylase compare
PS417_02355 -0.6 -4.3 thiamine biosynthesis protein ThiC compare
PS417_00030 -0.6 -1.3 hypothetical protein compare
PS417_10985 -0.6 -0.7 NADH:flavin oxidoreductase compare
PS417_03995 -0.6 -1.9 Fe(II)-dependent oxygenase compare
PS417_15540 -0.6 -1.1 NUDIX hydrolase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Fraxetin across organisms