Experiment set32S512 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 0.5 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_28050 -4.7 -4.6 hypothetical protein compare
PS417_27865 -3.8 -2.6 LysR family transcriptional regulator compare
PS417_13510 -3.5 -1.9 polyketide cyclase compare
PS417_27795 -3.3 -1.2 orotate phosphoribosyltransferase compare
PS417_23915 -3.2 -4.8 pantoate--beta-alanine ligase compare
PS417_21480 -3.2 -1.9 23S rRNA pseudouridylate synthase compare
PS417_04365 -2.7 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02485 -2.4 -3.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27870 -2.4 -3.2 ATP-dependent DNA helicase RecG compare
PS417_00510 -2.3 -2.1 membrane protein compare
PS417_06680 -2.2 -5.9 nuclease PIN compare
PS417_23810 -2.2 -8.8 acetolactate synthase 3 catalytic subunit compare
PS417_28070 -2.0 -10.1 phosphate ABC transporter ATP-binding protein compare
PS417_22565 -2.0 -0.7 formyltetrahydrofolate deformylase compare
PS417_08125 -2.0 -0.7 prephenate dehydratase compare
PS417_18310 -1.9 -1.3 hypothetical protein compare
PS417_22450 -1.9 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_10645 -1.8 -5.1 magnesium ABC transporter ATPase compare
PS417_04585 -1.7 -2.3 hypothetical protein compare
PS417_27425 -1.7 -6.7 exopolyphosphatase compare
PS417_16490 -1.7 -1.4 cell division protein FtsK compare
PS417_26775 -1.7 -7.9 thiazole synthase compare
PS417_02555 -1.7 -9.0 exoribonuclease R compare
PS417_24605 -1.6 -3.0 thiamine-phosphate pyrophosphorylase compare
PS417_11945 -1.5 -3.0 hypothetical protein compare
PS417_28080 -1.5 -9.2 phosphate ABC transporter permease compare
PS417_02880 -1.4 -1.8 copper chaperone compare
PS417_22445 -1.4 -3.0 ATP-dependent DNA helicase RuvB compare
PS417_27245 -1.4 -2.4 aminotransferase DegT compare
PS417_24600 -1.4 -5.0 hydrogenase compare
PS417_12870 -1.3 -1.8 enoyl-CoA hydratase compare
PS417_23380 -1.3 -2.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_07875 -1.3 -1.3 hypothetical protein compare
PS417_23805 -1.3 -4.2 acetolactate synthase 3 regulatory subunit compare
PS417_02280 -1.3 -1.1 GlcNAc-PI de-N-acetylase compare
PS417_14045 -1.2 -3.2 alkyl hydroperoxide reductase compare
PS417_11705 -1.2 -6.0 cyclic peptide transporter compare
PS417_07565 -1.2 -2.4 hypothetical protein compare
PS417_03260 -1.2 -1.2 5S ribosomal RNA compare
PS417_01605 -1.2 -1.2 phosphoglycerate mutase compare
PS417_13620 -1.2 -2.3 thermostable hemolysin compare
PS417_19425 -1.2 -1.3 allantoicase compare
PS417_09590 -1.2 -4.6 membrane protein compare
PS417_11925 -1.2 -1.6 hypothetical protein compare
PS417_07640 -1.2 -3.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_00385 -1.2 -1.4 Fur family transcriptional regulator compare
PS417_26990 -1.2 -0.7 RNA pyrophosphohydrolase compare
PS417_02975 -1.1 -3.5 3-dehydroquinate dehydratase compare
PS417_08170 -1.1 -6.7 capsular biosynthesis protein compare
PS417_01095 -1.1 -1.1 amino acid ABC transporter ATP-binding protein compare
PS417_03560 -1.1 -1.5 GTP-binding protein compare
PS417_06895 -1.1 -2.9 DNA-binding protein compare
PS417_22990 -1.1 -1.1 iron dicitrate transport regulator FecR compare
PS417_04390 -1.1 -2.0 toluene tolerance protein compare
PS417_05200 -1.1 -2.2 DNA recombination protein RecO compare
PS417_27300 -1.1 -0.9 cell division protein ZapA compare
PS417_08410 -1.0 -1.7 hypothetical protein compare
PS417_02270 -1.0 -2.3 carbamoyltransferase compare
PS417_04385 -1.0 -1.7 organic solvent ABC transporter substrate-binding protein compare
PS417_12660 -1.0 -1.5 hypothetical protein compare
PS417_19665 -1.0 -3.5 flagellar motor protein MotD compare
PS417_03830 -1.0 -5.7 protein disaggregation chaperone compare
PS417_02255 -1.0 -2.5 lipopolysaccharide kinase compare
PS417_28075 -1.0 -3.7 phosphate ABC transporter permease compare
PS417_27705 -1.0 -1.6 amino acid dehydrogenase compare
PS417_02980 -1.0 -1.2 chemotaxis protein compare
PS417_16195 -1.0 -1.2 AraC family transcriptional regulator compare
PS417_19730 -1.0 -2.5 flagellar biosynthesis protein FliR compare
PS417_27195 -1.0 -1.0 N-acetylglutamate synthase compare
PS417_27585 -1.0 -1.7 diaminopimelate epimerase compare
PS417_00345 -1.0 -0.9 copper-binding protein compare
PS417_24615 -1.0 -1.2 hypothetical protein compare
PS417_23385 -0.9 -5.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_19835 -0.9 -1.8 flagellar biosynthesis protein FliS compare
PS417_26370 -0.9 -3.1 RNA helicase compare
PS417_19850 -0.9 -5.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_21425 -0.9 -1.5 4-amino-4-deoxychorismate lyase compare
PS417_00650 -0.9 -0.9 LysR family transcriptional regulator compare
PS417_23995 -0.9 -0.8 preprotein translocase subunit SecG compare
PS417_27605 -0.9 -4.3 hypothetical protein compare
PS417_23775 -0.9 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_05815 -0.9 -2.5 recombinase RecA compare
PS417_17750 -0.9 -3.9 hypothetical protein compare
PS417_07305 -0.9 -1.3 3-beta hydroxysteroid dehydrogenase compare
PS417_26420 -0.9 -1.1 hypothetical protein compare
PS417_23390 -0.9 -3.8 ubiquinol oxidase subunit II compare
PS417_03465 -0.9 -1.1 type III secretion protein compare
PS417_27435 -0.9 -4.6 polyphosphate kinase compare
PS417_23370 -0.8 -2.3 protoheme IX farnesyltransferase compare
PS417_17780 -0.8 -0.9 Ais protein compare
PS417_15085 -0.8 -2.5 ATPase AAA compare
PS417_21595 -0.8 -4.2 flagellar biosynthesis protein FlgN compare
PS417_19350 -0.8 -3.1 GTP cyclohydrolase compare
PS417_08155 -0.8 -0.7 integration host factor subunit beta compare
PS417_00075 -0.8 -2.2 hypothetical protein compare
PS417_08135 -0.8 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_25710 -0.8 -1.4 indole-3-glycerol-phosphate synthase compare
PS417_06370 -0.8 -1.5 cold-shock protein compare
PS417_11940 -0.8 -4.8 TonB-dependent receptor compare
PS417_01560 -0.8 -1.8 imidazoleglycerol-phosphate dehydratase compare
PS417_19800 -0.8 -2.6 flagellar motor switch protein FliG compare
PS417_14080 -0.8 -2.6 hypothetical protein compare
PS417_20985 -0.8 -0.5 porin compare
PS417_22570 -0.8 -0.7 H-NS histone compare
PS417_02475 -0.8 -1.8 N-acetylmuramoyl-L-alanine amidase compare
PS417_23910 -0.7 -1.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_17840 -0.7 -1.4 betaine-aldehyde dehydrogenase compare
PS417_07275 -0.7 -1.7 5-carboxymethyl-2-hydroxymuconate isomerase compare
PS417_18070 -0.7 -1.0 general secretion pathway protein GspH compare
PS417_19805 -0.7 -3.1 flagellar M-ring protein FliF compare
PS417_13140 -0.7 -0.9 oxidoreductase compare
PS417_22350 -0.7 -1.8 Fis family transcriptional regulator compare
PS417_19645 -0.7 -1.6 chemotaxis protein compare
PS417_24500 -0.7 -0.9 DEAD/DEAH box helicase compare
PS417_05695 -0.7 -2.1 transcriptional regulator compare
PS417_10125 -0.7 -1.6 hypothetical protein compare
PS417_10985 -0.7 -0.9 NADH:flavin oxidoreductase compare
PS417_15540 -0.7 -1.3 NUDIX hydrolase compare
PS417_16080 -0.7 -2.4 AraC family transcriptional regulator compare
PS417_19860 -0.7 -5.5 flagellar hook protein FlgL compare
PS417_11715 -0.7 -2.2 chromophore maturation protein PvdO compare
PS417_19605 -0.7 -1.1 hypothetical protein compare
PS417_04305 -0.7 -1.2 aspartate ammonia-lyase compare
PS417_12280 -0.7 -1.2 MerR family transcriptional regulator compare
PS417_10245 -0.7 -1.4 hypothetical protein compare
PS417_28085 -0.7 -5.1 phosphate-binding protein compare
PS417_11180 -0.7 -2.0 TetR family transcriptional regulator compare
PS417_06365 -0.7 -4.5 RNA polymerase sigma factor compare
PS417_06200 -0.7 -2.9 protein-PII uridylyltransferase compare
PS417_05365 -0.7 -0.9 FAD-binding protein compare
PS417_04865 -0.7 -2.4 molybdenum cofactor biosynthesis protein MoaC compare
PS417_08295 -0.7 -2.0 ATPase compare
PS417_22895 -0.7 -2.7 tyrosine recombinase XerD compare
PS417_14400 -0.7 -1.7 hypothetical protein compare
PS417_10995 -0.7 -1.4 GntR family transcriptional regulator compare
PS417_03935 -0.7 -2.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_14140 -0.7 -1.7 membrane protein compare
PS417_19415 -0.7 -2.3 allantoinase compare
PS417_19840 -0.7 -4.4 flagellar cap protein FliD compare
PS417_03990 -0.6 -4.8 ligand-gated channel protein compare
PS417_05975 -0.6 -0.5 chemotaxis protein CheW compare
PS417_12310 -0.6 -2.9 methionine synthase compare
PS417_25705 -0.6 -1.4 lipoate--protein ligase compare
PS417_07695 -0.6 -2.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_20715 -0.6 -1.2 cytochrome Cbb3 compare
PS417_23900 -0.6 -3.3 poly(A) polymerase compare
PS417_23710 -0.6 -2.6 Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) compare
PS417_28515 -0.6 -1.3 16S rRNA methyltransferase compare
PS417_13715 -0.6 -3.4 hypothetical protein compare
PS417_22620 -0.6 -1.5 pyruvate kinase compare
PS417_09085 -0.6 -1.1 hypothetical protein compare
PS417_15780 -0.6 -2.0 membrane protein compare
PS417_15975 -0.6 -1.2 glutamate carboxypeptidase compare
PS417_19790 -0.6 -1.6 ATP synthase compare
PS417_07470 -0.6 -1.0 hypothetical protein compare
PS417_02780 -0.6 -2.9 DNA-binding protein compare
PS417_06490 -0.6 -1.7 hypothetical protein compare
PS417_14040 -0.6 -2.5 alkyl hydroperoxide reductase compare
PS417_06245 -0.6 -0.8 zinc metallopeptidase RseP compare
PS417_02110 -0.6 -1.2 acyl carrier protein compare
PS417_00045 -0.6 -1.0 glycerol acyltransferase compare
PS417_01920 -0.6 -0.6 ATP-dependent protease subunit HslV compare
PS417_08105 -0.6 -4.3 N-ethylammeline chlorohydrolase compare
PS417_18205 -0.6 -1.2 aldehyde dehydrogenase compare
PS417_14815 -0.6 -2.4 diguanylate cyclase compare
PS417_05100 -0.6 -1.4 RNA polymerase sigma factor compare
PS417_22195 -0.6 -1.6 peptidase compare
PS417_11460 -0.6 -2.6 divalent metal cation transporter MntH compare
PS417_06040 -0.6 -1.9 hypothetical protein compare
PS417_07240 -0.6 -2.0 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_23545 -0.6 -1.0 gamma-glutamyl kinase compare
PS417_07615 -0.6 -2.3 TetR family transcriptional regulator compare
PS417_25155 -0.6 -0.6 hypothetical protein compare
PS417_09615 -0.6 -2.0 glycosyl transferase family 1 compare
PS417_19785 -0.6 -2.2 flagellar biogenesis protein compare
PS417_24745 -0.6 -1.1 gamma-glutamyl phosphate reductase compare
PS417_09625 -0.5 -1.5 sugar ABC transporter substrate-binding protein compare
PS417_09595 -0.5 -2.2 membrane protein compare
PS417_19795 -0.5 -4.1 flagellar assembly protein FliH compare
PS417_18865 -0.5 -1.9 hypothetical protein compare
PS417_11545 -0.5 -1.9 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_00085 -0.5 -1.3 16S rRNA methyltransferase compare
PS417_23845 -0.5 -2.5 hemin ABC transporter ATP-binding protein compare
PS417_02820 -0.5 -1.2 urea ABC transporter ATP-binding protein compare
PS417_06540 -0.5 -0.7 membrane protein compare
PS417_19675 -0.5 -1.8 chemotaxis protein CheY compare
PS417_17845 -0.5 -1.7 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
PS417_07170 -0.5 -1.7 hypothetical protein compare
PS417_18195 -0.5 -1.9 3-(3-hydroxyphenyl)propionate hydroxylase compare
PS417_13290 -0.5 -2.3 AraC family transcriptional regulator compare
PS417_27135 -0.5 -0.4 glutamine synthetase compare
PS417_02895 -0.5 -1.3 precorrin-6Y C5,15-methyltransferase compare
PS417_26815 -0.5 -0.8 peptidase M16 compare
PS417_01440 -0.5 -2.3 hypothetical protein compare
PS417_06390 -0.5 -3.4 DEAD/DEAH box helicase compare
PS417_20515 -0.5 -2.1 FMN-dependent NADH-azoreductase compare
PS417_22400 -0.5 -3.0 7-cyano-7-deazaguanine synthase compare
PS417_21565 -0.5 -2.4 flagellar basal body rod protein FlgC compare
PS417_08510 -0.5 -1.6 LysR family transcriptional regulator compare
PS417_15435 -0.5 -1.4 metallophosphatase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Fraxetin across organisms