Experiment set32S511 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 3 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23380 -3.9 -3.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_23915 -3.6 -6.0 pantoate--beta-alanine ligase compare
PS417_03260 -3.0 -1.5 5S ribosomal RNA compare
PS417_06680 -2.8 -6.0 nuclease PIN compare
PS417_01855 -2.7 -2.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_23375 -2.7 -2.8 cytochrome C oxidase compare
PS417_04380 -2.5 -1.6 ABC transporter permease compare
PS417_27195 -2.5 -1.4 N-acetylglutamate synthase compare
PS417_10645 -2.3 -5.9 magnesium ABC transporter ATPase compare
PS417_05595 -2.3 -7.9 ornithine carbamoyltransferase compare
PS417_08125 -2.1 -0.8 prephenate dehydratase compare
PS417_06375 -2.1 -0.8 deoxycytidine triphosphate deaminase compare
PS417_19350 -2.0 -5.9 GTP cyclohydrolase compare
PS417_23370 -2.0 -4.0 protoheme IX farnesyltransferase compare
PS417_01575 -2.0 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01580 -1.9 -2.3 imidazole glycerol phosphate synthase compare
PS417_26775 -1.9 -10.5 thiazole synthase compare
PS417_07875 -1.9 -1.6 hypothetical protein compare
PS417_03560 -1.9 -1.8 GTP-binding protein compare
PS417_28050 -1.9 -1.4 hypothetical protein compare
PS417_23385 -1.9 -7.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_13305 -1.8 -1.9 hypothetical protein compare
PS417_02555 -1.8 -9.8 exoribonuclease R compare
PS417_08410 -1.8 -1.7 hypothetical protein compare
PS417_01565 -1.7 -5.1 imidazole glycerol phosphate synthase compare
PS417_04365 -1.7 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_09590 -1.7 -8.0 membrane protein compare
PS417_24600 -1.7 -7.9 hydrogenase compare
PS417_13510 -1.6 -1.5 polyketide cyclase compare
PS417_20855 -1.6 -1.7 hypothetical protein compare
PS417_04420 -1.6 -6.8 histidinol dehydrogenase compare
PS417_23950 -1.6 -1.3 polynucleotide phosphorylase/polyadenylase compare
PS417_01850 -1.5 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_24935 -1.5 -1.5 hypothetical protein compare
PS417_27425 -1.5 -6.2 exopolyphosphatase compare
PS417_02885 -1.5 -2.7 hypothetical protein compare
PS417_02880 -1.5 -1.9 copper chaperone compare
PS417_21480 -1.5 -1.3 23S rRNA pseudouridylate synthase compare
PS417_23390 -1.5 -4.5 ubiquinol oxidase subunit II compare
PS417_02510 -1.5 -4.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27865 -1.4 -1.6 LysR family transcriptional regulator compare
PS417_16555 -1.4 -1.9 cupin compare
PS417_01560 -1.4 -2.5 imidazoleglycerol-phosphate dehydratase compare
PS417_02280 -1.4 -1.5 GlcNAc-PI de-N-acetylase compare
PS417_27795 -1.4 -0.7 orotate phosphoribosyltransferase compare
PS417_24605 -1.4 -3.8 thiamine-phosphate pyrophosphorylase compare
PS417_22445 -1.3 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_16490 -1.3 -1.2 cell division protein FtsK compare
PS417_27870 -1.3 -2.4 ATP-dependent DNA helicase RecG compare
PS417_04385 -1.3 -1.9 organic solvent ABC transporter substrate-binding protein compare
PS417_28070 -1.3 -7.6 phosphate ABC transporter ATP-binding protein compare
PS417_02255 -1.3 -2.7 lipopolysaccharide kinase compare
PS417_27315 -1.2 -1.6 hypothetical protein compare
PS417_27290 -1.2 -1.5 hypothetical protein compare
PS417_25710 -1.2 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_02270 -1.2 -2.5 carbamoyltransferase compare
PS417_15540 -1.2 -2.1 NUDIX hydrolase compare
PS417_07710 -1.2 -2.6 membrane protein compare
PS417_24620 -1.2 -1.7 hypothetical protein compare
PS417_09600 -1.2 -4.5 glycosyl transferase family 1 compare
PS417_24525 -1.2 -1.8 nuclease compare
PS417_06245 -1.2 -1.2 zinc metallopeptidase RseP compare
PS417_20725 -1.2 -2.2 cbb3-type cytochrome c oxidase subunit II compare
PS417_04415 -1.2 -7.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_28080 -1.2 -8.5 phosphate ABC transporter permease compare
PS417_23810 -1.1 -6.2 acetolactate synthase 3 catalytic subunit compare
PS417_03830 -1.1 -6.9 protein disaggregation chaperone compare
PS417_22570 -1.1 -0.9 H-NS histone compare
PS417_03465 -1.1 -1.7 type III secretion protein compare
PS417_27300 -1.0 -0.9 cell division protein ZapA compare
PS417_18425 -1.0 -1.5 sporulation protein compare
PS417_27640 -1.0 -1.2 TetR family transcriptional regulator compare
PS417_08090 -1.0 -0.9 3-oxoacyl-ACP reductase compare
PS417_22520 -1.0 -1.3 histidine kinase compare
PS417_27245 -1.0 -1.8 aminotransferase DegT compare
PS417_20705 -1.0 -2.2 cbb3-type cytochrome c oxidase subunit II compare
PS417_02395 -1.0 -3.8 DNA topoisomerase IV subunit B compare
PS417_08540 -1.0 -2.0 RNA helicase compare
PS417_08580 -1.0 -3.4 histidine kinase compare
PS417_02950 -1.0 -2.0 tRNA-dihydrouridine synthase B compare
PS417_27605 -1.0 -4.4 hypothetical protein compare
PS417_21105 -1.0 -4.7 aminodeoxychorismate synthase compare
PS417_01710 -0.9 -2.4 histidine utilization repressor compare
PS417_15805 -0.9 -1.7 transporter compare
PS417_22530 -0.9 -3.6 hypothetical protein compare
PS417_24745 -0.9 -1.9 gamma-glutamyl phosphate reductase compare
PS417_22895 -0.9 -6.0 tyrosine recombinase XerD compare
PS417_06770 -0.9 -2.9 multidrug transporter compare
PS417_05695 -0.9 -3.4 transcriptional regulator compare
PS417_22535 -0.9 -3.4 ornithine acetyltransferase compare
PS417_09585 -0.9 -4.6 acetyltransferase compare
PS417_09865 -0.9 -1.9 hypothetical protein compare
PS417_02225 -0.9 -1.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_09615 -0.9 -3.9 glycosyl transferase family 1 compare
PS417_02975 -0.9 -2.1 3-dehydroquinate dehydratase compare
PS417_07695 -0.9 -3.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_07400 -0.9 -2.4 hypothetical protein compare
PS417_25720 -0.8 -4.4 anthranilate synthase component II compare
PS417_06685 -0.8 -0.8 beta-ketoadipyl CoA thiolase compare
PS417_27835 -0.8 -4.0 endoribonuclease compare
PS417_02485 -0.8 -1.8 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_08590 -0.8 -1.7 hypothetical protein compare
PS417_26995 -0.8 -4.4 phosphoserine phosphatase compare
PS417_00080 -0.8 -4.1 potassium transporter peripheral membrane component compare
PS417_20985 -0.8 -0.5 porin compare
PS417_22620 -0.8 -2.9 pyruvate kinase compare
PS417_25390 -0.8 -2.6 MFS transporter compare
PS417_06500 -0.8 -0.7 hypothetical protein compare
PS417_23825 -0.8 -3.8 penicillin-binding protein compare
PS417_12900 -0.8 -2.2 Fe-S protein compare
PS417_22450 -0.8 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_09625 -0.8 -1.7 sugar ABC transporter substrate-binding protein compare
PS417_24570 -0.8 -3.1 AsnC family transcriptional regulator compare
PS417_11925 -0.8 -1.5 hypothetical protein compare
PS417_18355 -0.8 -4.3 DNA-binding protein compare
PS417_12585 -0.8 -4.3 acriflavine resistance protein B compare
PS417_04390 -0.8 -1.7 toluene tolerance protein compare
PS417_04650 -0.8 -0.4 D-alanine--D-alanine ligase compare
PS417_13050 -0.8 -2.0 N-acetylglucosamine-6-sulfatase compare
PS417_07615 -0.8 -3.3 TetR family transcriptional regulator compare
PS417_22575 -0.8 -3.5 exonuclease I compare
PS417_05815 -0.8 -2.8 recombinase RecA compare
PS417_27295 -0.8 -3.2 hypothetical protein compare
PS417_02455 -0.8 -2.5 putative transporter, required for glycine utilization (from data) compare
PS417_07120 -0.8 -2.3 RNA polymerase sigma-H factor compare
PS417_22050 -0.8 -2.6 ribonuclease BN compare
PS417_14075 -0.8 -1.4 hypothetical protein compare
PS417_27110 -0.7 -3.0 spermidine/putrescine ABC transporter permease compare
PS417_04440 -0.7 -1.6 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_18235 -0.7 -2.5 nitrile hydratase compare
PS417_00755 -0.7 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_06775 -0.7 -4.3 antibiotic transporter compare
PS417_08170 -0.7 -4.7 capsular biosynthesis protein compare
PS417_18930 -0.7 -1.5 restriction endonuclease subunit S compare
PS417_26985 -0.7 -3.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_04585 -0.7 -0.9 hypothetical protein compare
PS417_09595 -0.7 -3.1 membrane protein compare
PS417_00045 -0.7 -1.2 glycerol acyltransferase compare
PS417_22380 -0.7 -3.8 hypothetical protein compare
PS417_11705 -0.7 -3.6 cyclic peptide transporter compare
PS417_23910 -0.7 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_11015 -0.7 -2.5 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
PS417_16560 -0.7 -1.2 GNAT family acetyltransferase compare
PS417_01955 -0.7 -4.2 peptidase compare
PS417_00385 -0.7 -0.9 Fur family transcriptional regulator compare
PS417_28515 -0.7 -2.4 16S rRNA methyltransferase compare
PS417_26990 -0.7 -0.5 RNA pyrophosphohydrolase compare
PS417_17590 -0.7 -1.7 ABC transporter substrate-binding protein compare
PS417_02870 -0.7 -3.9 TonB-dependent receptor compare
PS417_15090 -0.7 -1.0 hypothetical protein compare
PS417_28085 -0.7 -5.5 phosphate-binding protein compare
PS417_04595 -0.7 -1.3 cell division protein MraZ compare
PS417_11545 -0.7 -1.9 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_14755 -0.7 -1.0 UV damage repair endonuclease UvdE compare
PS417_19520 -0.6 -2.0 transcriptional regulator compare
PS417_12355 -0.6 -1.1 magnesium chelatase compare
PS417_08990 -0.6 -2.3 ABC transporter substrate-binding protein compare
PS417_23805 -0.6 -1.7 acetolactate synthase 3 regulatory subunit compare
PS417_05860 -0.6 -1.3 hypothetical protein compare
PS417_13620 -0.6 -1.5 thermostable hemolysin compare
PS417_19955 -0.6 -0.9 hypothetical protein compare
PS417_28075 -0.6 -2.3 phosphate ABC transporter permease compare
PS417_22405 -0.6 -2.9 7-carboxy-7-deazaguanine synthase compare
PS417_11400 -0.6 -0.8 phosphoglycerate mutase compare
PS417_20030 -0.6 -1.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_04180 -0.6 -2.1 GntR family transcriptional regulator compare
PS417_24500 -0.6 -1.7 DEAD/DEAH box helicase compare
PS417_00175 -0.6 -0.9 CigR compare
PS417_26640 -0.6 -2.2 hypothetical protein compare
PS417_28510 -0.6 -2.4 chromosome partitioning protein compare
PS417_19600 -0.6 -0.8 exonuclease compare
PS417_20720 -0.6 -1.9 cbb3-type cytochrome c oxidase subunit I compare
PS417_06205 -0.6 -3.3 methionine aminopeptidase compare
PS417_16085 -0.6 -2.8 LysR family transcriptional regulator compare
PS417_21090 -0.6 -2.1 hypothetical protein compare
PS417_12310 -0.6 -3.3 methionine synthase compare
PS417_27305 -0.6 -3.3 5-formyltetrahydrofolate cyclo-ligase compare
PS417_01620 -0.6 -1.1 preprotein translocase subunit SecB compare
PS417_10265 -0.6 -1.4 peptidase compare
PS417_11715 -0.6 -2.5 chromophore maturation protein PvdO compare
PS417_07985 -0.6 -1.1 AbrB family transcriptional regulator compare
PS417_18310 -0.6 -0.5 hypothetical protein compare
PS417_01900 -0.6 -2.1 poly(3-hydroxyalkanoate) depolymerase compare
PS417_24535 -0.6 -1.5 membrane protein compare
PS417_12455 -0.6 -1.6 hydrolase compare
PS417_03300 -0.6 -1.1 alanine acetyltransferase compare
PS417_01145 -0.6 -0.7 taurine transporter ATP-binding subunit compare
PS417_02360 -0.6 -1.8 nitrate reductase compare
PS417_00180 -0.6 -1.1 tryptophan synthase subunit alpha compare
PS417_02475 -0.6 -1.4 N-acetylmuramoyl-L-alanine amidase compare
PS417_27485 -0.6 -3.1 hypothetical protein compare
PS417_19835 -0.6 -1.3 flagellar biosynthesis protein FliS compare
PS417_10985 -0.6 -0.8 NADH:flavin oxidoreductase compare
PS417_00660 -0.6 -1.8 DSBA oxidoreductase compare
PS417_00825 -0.6 -0.9 recombinase RecF compare
PS417_26755 -0.6 -1.2 nucleoside-triphosphate diphosphatase compare
PS417_16565 -0.6 -2.0 secretin compare
PS417_17670 -0.6 -1.4 ABC transporter permease compare
PS417_08960 -0.6 -2.9 peroxiredoxin compare
PS417_04320 -0.6 -2.2 divalent cation transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms