Experiment set32S510 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 2 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -4.4 -5.9 pantoate--beta-alanine ligase compare
PS417_21430 -3.4 -2.3 3-oxoacyl-ACP synthase compare
PS417_27795 -3.2 -1.1 orotate phosphoribosyltransferase compare
PS417_06680 -2.9 -5.9 nuclease PIN compare
PS417_04365 -2.7 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_09590 -2.5 -4.4 membrane protein compare
PS417_23380 -2.4 -3.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_22450 -2.3 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_27195 -2.3 -1.8 N-acetylglutamate synthase compare
PS417_03260 -2.1 -1.4 5S ribosomal RNA compare
PS417_08125 -2.0 -0.7 prephenate dehydratase compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_28050 -2.0 -1.4 hypothetical protein compare
PS417_21480 -1.9 -1.5 23S rRNA pseudouridylate synthase compare
PS417_02555 -1.9 -10.3 exoribonuclease R compare
PS417_19350 -1.8 -4.6 GTP cyclohydrolase compare
PS417_22990 -1.8 -1.6 iron dicitrate transport regulator FecR compare
PS417_03465 -1.8 -2.4 type III secretion protein compare
PS417_03560 -1.7 -1.7 GTP-binding protein compare
PS417_10645 -1.6 -4.6 magnesium ABC transporter ATPase compare
PS417_22445 -1.5 -2.7 ATP-dependent DNA helicase RuvB compare
PS417_26775 -1.5 -7.3 thiazole synthase compare
PS417_18455 -1.5 -2.0 hypothetical protein compare
PS417_27425 -1.5 -4.7 exopolyphosphatase compare
PS417_23370 -1.5 -4.0 protoheme IX farnesyltransferase compare
PS417_04380 -1.5 -1.1 ABC transporter permease compare
PS417_07710 -1.5 -3.0 membrane protein compare
PS417_22570 -1.4 -1.0 H-NS histone compare
PS417_02880 -1.4 -1.3 copper chaperone compare
PS417_09600 -1.4 -3.7 glycosyl transferase family 1 compare
PS417_24600 -1.4 -4.7 hydrogenase compare
PS417_28070 -1.4 -5.8 phosphate ABC transporter ATP-binding protein compare
PS417_27300 -1.4 -0.9 cell division protein ZapA compare
PS417_27870 -1.4 -2.5 ATP-dependent DNA helicase RecG compare
PS417_23385 -1.4 -7.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_06685 -1.4 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_23810 -1.4 -6.7 acetolactate synthase 3 catalytic subunit compare
PS417_27595 -1.3 -1.6 recombinase XerC compare
PS417_05815 -1.3 -3.4 recombinase RecA compare
PS417_01580 -1.3 -1.5 imidazole glycerol phosphate synthase compare
PS417_23375 -1.3 -1.7 cytochrome C oxidase compare
PS417_24935 -1.2 -1.2 hypothetical protein compare
PS417_08410 -1.2 -2.3 hypothetical protein compare
PS417_02510 -1.2 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_05595 -1.2 -7.5 ornithine carbamoyltransferase compare
PS417_09615 -1.2 -4.6 glycosyl transferase family 1 compare
PS417_05445 -1.2 -1.5 DNA mismatch repair protein MutT compare
PS417_01855 -1.2 -2.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_21655 -1.2 -1.3 aspartate kinase compare
PS417_24605 -1.1 -2.4 thiamine-phosphate pyrophosphorylase compare
PS417_22895 -1.1 -6.4 tyrosine recombinase XerD compare
PS417_02255 -1.1 -2.0 lipopolysaccharide kinase compare
PS417_01565 -1.1 -3.5 imidazole glycerol phosphate synthase compare
PS417_02485 -1.1 -2.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27865 -1.1 -1.5 LysR family transcriptional regulator compare
PS417_16195 -1.1 -1.2 AraC family transcriptional regulator compare
PS417_09730 -1.1 -2.2 adenylylsulfate kinase compare
PS417_23545 -1.1 -1.4 gamma-glutamyl kinase compare
PS417_02765 -1.0 -1.6 phosphate starvation-inducible protein PsiF compare
PS417_08580 -1.0 -4.1 histidine kinase compare
PS417_13855 -1.0 -1.3 acetyl-CoA acetyltransferase compare
PS417_26730 -1.0 -0.6 pyrroline-5-carboxylate reductase compare
PS417_22520 -1.0 -1.0 histidine kinase compare
PS417_22840 -1.0 -1.4 tRNA-Met compare
PS417_00045 -1.0 -1.3 glycerol acyltransferase compare
PS417_23805 -0.9 -2.7 acetolactate synthase 3 regulatory subunit compare
PS417_15095 -0.9 -2.6 hypothetical protein compare
PS417_22620 -0.9 -2.4 pyruvate kinase compare
PS417_00180 -0.9 -1.7 tryptophan synthase subunit alpha compare
PS417_16560 -0.9 -1.6 GNAT family acetyltransferase compare
PS417_01435 -0.9 -1.3 hypothetical protein compare
PS417_15035 -0.9 -1.5 alkylhydroperoxidase compare
PS417_10040 -0.9 -1.0 MFS transporter compare
PS417_01590 -0.9 -1.8 polysaccharide deacetylase compare
PS417_28080 -0.9 -6.5 phosphate ABC transporter permease compare
PS417_00385 -0.9 -1.0 Fur family transcriptional regulator compare
PS417_19425 -0.9 -0.9 allantoicase compare
PS417_28230 -0.9 -2.2 transcriptional regulator compare
PS417_09585 -0.9 -4.6 acetyltransferase compare
PS417_01620 -0.9 -2.2 preprotein translocase subunit SecB compare
PS417_08540 -0.9 -1.6 RNA helicase compare
PS417_01575 -0.9 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_06205 -0.9 -4.5 methionine aminopeptidase compare
PS417_17560 -0.8 -2.7 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_07560 -0.8 -1.0 universal stress protein UspA compare
PS417_02280 -0.8 -0.8 GlcNAc-PI de-N-acetylase compare
PS417_11400 -0.8 -1.4 phosphoglycerate mutase compare
PS417_26605 -0.8 -0.6 malonate decarboxylase subunit beta compare
PS417_10985 -0.8 -1.0 NADH:flavin oxidoreductase compare
PS417_04390 -0.8 -2.3 toluene tolerance protein compare
PS417_02720 -0.8 -0.8 TetR family transcriptional regulator compare
PS417_09595 -0.8 -3.1 membrane protein compare
PS417_03300 -0.8 -2.0 alanine acetyltransferase compare
PS417_28170 -0.8 -2.6 transcriptional regulator compare
PS417_21510 -0.8 -2.0 histidine kinase compare
PS417_08680 -0.8 -1.6 flagellar biosynthesis protein FlhB compare
PS417_08730 -0.8 -1.1 cytochrome C compare
PS417_27715 -0.8 -1.9 Fe-S oxidoreductase compare
PS417_14655 -0.8 -1.0 lysine transporter LysE compare
PS417_23910 -0.8 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_22050 -0.8 -2.6 ribonuclease BN compare
PS417_20705 -0.8 -1.7 cbb3-type cytochrome c oxidase subunit II compare
PS417_23825 -0.8 -3.6 penicillin-binding protein compare
PS417_04385 -0.8 -1.4 organic solvent ABC transporter substrate-binding protein compare
PS417_27605 -0.8 -3.8 hypothetical protein compare
PS417_01145 -0.8 -0.7 taurine transporter ATP-binding subunit compare
PS417_08130 -0.8 -1.0 aspartate aminotransferase compare
PS417_04650 -0.8 -0.3 D-alanine--D-alanine ligase compare
PS417_05985 -0.8 -1.8 chemotaxis protein CheY compare
PS417_13640 -0.8 -1.2 ribose ABC transporter permease compare
PS417_02270 -0.8 -1.8 carbamoyltransferase compare
PS417_19850 -0.8 -5.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_18570 -0.7 -3.4 peptidoglycan-binding protein compare
PS417_27075 -0.7 -1.9 thiol-disulfide isomerase compare
PS417_13205 -0.7 -0.9 isochorismate-pyruvate lyase compare
PS417_01285 -0.7 -1.4 haloacid dehalogenase compare
PS417_00185 -0.7 -2.3 tryptophan synthase subunit beta compare
PS417_21625 -0.7 -0.8 DNA-binding protein compare
PS417_08650 -0.7 -1.2 transcriptional regulator compare
PS417_27640 -0.7 -0.9 TetR family transcriptional regulator compare
PS417_08155 -0.7 -0.7 integration host factor subunit beta compare
PS417_13185 -0.7 -1.8 RND transporter compare
PS417_20985 -0.7 -0.5 porin compare
PS417_05820 -0.7 -1.5 recombinase RecX compare
PS417_02870 -0.7 -3.4 TonB-dependent receptor compare
PS417_11175 -0.7 -1.6 AraC family transcriptional regulator compare
PS417_12390 -0.7 -1.6 hypothetical protein compare
PS417_23025 -0.7 -2.9 murein transglycosylase compare
PS417_20720 -0.7 -1.8 cbb3-type cytochrome c oxidase subunit I compare
PS417_22530 -0.7 -2.8 hypothetical protein compare
PS417_23775 -0.7 -0.8 exodeoxyribonuclease V subunit beta compare
PS417_12280 -0.7 -1.0 MerR family transcriptional regulator compare
PS417_11705 -0.7 -3.4 cyclic peptide transporter compare
PS417_25155 -0.7 -1.3 hypothetical protein compare
PS417_02455 -0.7 -2.6 putative transporter, required for glycine utilization (from data) compare
PS417_02210 -0.7 -3.7 diguanylate cyclase compare
PS417_19885 -0.7 -2.7 flagellar basal body rod protein FlgG compare
PS417_13755 -0.7 -0.8 oxidoreductase compare
PS417_18205 -0.7 -1.3 aldehyde dehydrogenase compare
PS417_15930 -0.7 -2.1 thioredoxin reductase compare
PS417_11360 -0.7 -2.1 energy transducer TonB compare
PS417_06945 -0.7 -0.8 membrane protein compare
PS417_12525 -0.7 -2.6 hypothetical protein compare
PS417_15465 -0.7 -1.9 carboxynorspermidine decarboxylase compare
PS417_12695 -0.7 -2.4 mannitol dehydrogenase compare
PS417_23580 -0.7 -0.9 peptidylprolyl isomerase compare
PS417_02740 -0.7 -1.7 LysR family transcriptional regulator compare
PS417_21695 -0.7 -1.7 succinylglutamate-semialdehyde dehydrogenase compare
PS417_28075 -0.7 -2.4 phosphate ABC transporter permease compare
PS417_10245 -0.7 -1.3 hypothetical protein compare
PS417_21850 -0.6 -0.9 LysR family transcriptional regulator compare
PS417_27435 -0.6 -3.4 polyphosphate kinase compare
PS417_15540 -0.6 -1.2 NUDIX hydrolase compare
PS417_04420 -0.6 -2.9 histidinol dehydrogenase compare
PS417_00510 -0.6 -0.9 membrane protein compare
PS417_19800 -0.6 -2.0 flagellar motor switch protein FliG compare
PS417_07695 -0.6 -2.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_24675 -0.6 -1.3 lipoyl synthase compare
PS417_27815 -0.6 -1.1 hypothetical protein compare
PS417_23250 -0.6 -2.6 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_02975 -0.6 -1.9 3-dehydroquinate dehydratase compare
PS417_09625 -0.6 -2.2 sugar ABC transporter substrate-binding protein compare
PS417_27245 -0.6 -1.1 aminotransferase DegT compare
PS417_06895 -0.6 -1.6 DNA-binding protein compare
PS417_07120 -0.6 -2.4 RNA polymerase sigma-H factor compare
PS417_19730 -0.6 -2.1 flagellar biosynthesis protein FliR compare
PS417_17330 -0.6 -2.2 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PS417_23390 -0.6 -2.6 ubiquinol oxidase subunit II compare
PS417_21760 -0.6 -1.1 hypothetical protein compare
PS417_22535 -0.6 -2.7 ornithine acetyltransferase compare
PS417_22935 -0.6 -2.0 hypothetical protein compare
PS417_25675 -0.6 -2.2 membrane protein compare
PS417_05325 -0.6 -1.5 fimbrial protein compare
PS417_03830 -0.6 -3.6 protein disaggregation chaperone compare
PS417_04530 -0.6 -1.1 glycerate dehydrogenase compare
PS417_03780 -0.6 -2.0 general secretion pathway protein GspH compare
PS417_09865 -0.6 -1.2 hypothetical protein compare
PS417_01885 -0.6 -2.0 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
PS417_18470 -0.6 -1.9 hypothetical protein compare
PS417_13545 -0.6 -2.2 arginine aminotransferase compare
PS417_11380 -0.6 -1.4 peptidylprolyl isomerase compare
PS417_22400 -0.6 -3.8 7-cyano-7-deazaguanine synthase compare
PS417_03915 -0.6 -2.3 tRNA-Thr compare
PS417_21830 -0.6 -1.6 TetR family transcriptional regulator compare
PS417_24650 -0.6 -0.9 membrane protein compare
PS417_27295 -0.6 -1.7 hypothetical protein compare
PS417_19065 -0.6 -0.6 monooxygenase compare
PS417_19630 -0.6 -1.7 LuxR family transcriptional regulator compare
PS417_20880 -0.6 -1.7 GntR family transcriptional regulator compare
PS417_24560 -0.6 -1.6 ferrous iron transporter compare
PS417_19860 -0.6 -4.3 flagellar hook protein FlgL compare
PS417_26590 -0.6 -1.7 malonate decarboxylase subunit epsilon compare
PS417_27315 -0.5 -0.7 hypothetical protein compare
PS417_21870 -0.5 -1.1 glycerophosphodiester phosphodiesterase compare
PS417_26400 -0.5 -1.7 metal-dependent hydrolase compare
PS417_23420 -0.5 -2.9 LuxR family transcriptional regulator compare
PS417_02705 -0.5 -1.3 urease accessory protein UreF compare
PS417_05695 -0.5 -2.1 transcriptional regulator compare
PS417_01570 -0.5 -1.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_22575 -0.5 -2.9 exonuclease I compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms