Experiment set32S508 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 0.5 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_27795 -3.2 -1.2 orotate phosphoribosyltransferase compare
PS417_28050 -3.1 -2.3 hypothetical protein compare
PS417_08025 -3.1 -1.8 acetylornithine aminotransferase compare
PS417_03260 -3.0 -1.5 5S ribosomal RNA compare
PS417_23915 -2.6 -3.8 pantoate--beta-alanine ligase compare
PS417_21480 -2.5 -2.1 23S rRNA pseudouridylate synthase compare
PS417_08090 -2.5 -1.3 3-oxoacyl-ACP reductase compare
PS417_27870 -2.4 -3.2 ATP-dependent DNA helicase RecG compare
PS417_26990 -2.4 -1.3 RNA pyrophosphohydrolase compare
PS417_22450 -2.3 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_02280 -2.3 -1.8 GlcNAc-PI de-N-acetylase compare
PS417_09600 -2.2 -3.9 glycosyl transferase family 1 compare
PS417_06680 -2.1 -5.8 nuclease PIN compare
PS417_09590 -2.1 -6.7 membrane protein compare
PS417_22565 -2.0 -0.7 formyltetrahydrofolate deformylase compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_08125 -2.0 -0.7 prephenate dehydratase compare
PS417_09595 -1.8 -3.6 membrane protein compare
PS417_02485 -1.8 -3.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27595 -1.7 -2.6 recombinase XerC compare
PS417_16555 -1.7 -1.5 cupin compare
PS417_23810 -1.7 -7.7 acetolactate synthase 3 catalytic subunit compare
PS417_09615 -1.7 -6.4 glycosyl transferase family 1 compare
PS417_28070 -1.7 -8.6 phosphate ABC transporter ATP-binding protein compare
PS417_02880 -1.6 -2.0 copper chaperone compare
PS417_23805 -1.6 -4.7 acetolactate synthase 3 regulatory subunit compare
PS417_09585 -1.6 -7.5 acetyltransferase compare
PS417_02555 -1.6 -8.8 exoribonuclease R compare
PS417_24600 -1.6 -6.1 hydrogenase compare
PS417_27865 -1.5 -1.7 LysR family transcriptional regulator compare
PS417_04380 -1.5 -1.2 ABC transporter permease compare
PS417_27435 -1.4 -5.8 polyphosphate kinase compare
PS417_14045 -1.3 -3.8 alkyl hydroperoxide reductase compare
PS417_26775 -1.3 -7.2 thiazole synthase compare
PS417_10645 -1.3 -3.7 magnesium ABC transporter ATPase compare
PS417_27425 -1.3 -5.1 exopolyphosphatase compare
PS417_11705 -1.3 -5.9 cyclic peptide transporter compare
PS417_04305 -1.3 -1.6 aspartate ammonia-lyase compare
PS417_04390 -1.3 -2.4 toluene tolerance protein compare
PS417_19675 -1.2 -4.1 chemotaxis protein CheY compare
PS417_27195 -1.1 -1.2 N-acetylglutamate synthase compare
PS417_02475 -1.1 -2.8 N-acetylmuramoyl-L-alanine amidase compare
PS417_23080 -1.1 -2.9 sugar ABC transporter ATPase compare
PS417_02255 -1.1 -2.7 lipopolysaccharide kinase compare
PS417_24605 -1.1 -2.6 thiamine-phosphate pyrophosphorylase compare
PS417_04385 -1.0 -1.5 organic solvent ABC transporter substrate-binding protein compare
PS417_00175 -1.0 -1.2 CigR compare
PS417_28080 -1.0 -6.9 phosphate ABC transporter permease compare
PS417_28515 -1.0 -1.7 16S rRNA methyltransferase compare
PS417_17645 -0.9 -1.7 RND transporter compare
PS417_19665 -0.9 -3.0 flagellar motor protein MotD compare
PS417_14590 -0.9 -1.7 LysR family transcriptional regulator compare
PS417_15465 -0.9 -1.8 carboxynorspermidine decarboxylase compare
PS417_15540 -0.9 -1.2 NUDIX hydrolase compare
PS417_07875 -0.9 -1.0 hypothetical protein compare
PS417_23995 -0.9 -0.8 preprotein translocase subunit SecG compare
PS417_22870 -0.8 -1.8 lipoprotein compare
PS417_13510 -0.8 -0.9 polyketide cyclase compare
PS417_11810 -0.8 -1.7 oxidoreductase compare
PS417_06205 -0.8 -4.2 methionine aminopeptidase compare
PS417_19850 -0.8 -5.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_07305 -0.8 -1.2 3-beta hydroxysteroid dehydrogenase compare
PS417_04180 -0.8 -1.2 GntR family transcriptional regulator compare
PS417_07170 -0.8 -1.9 hypothetical protein compare
PS417_08540 -0.8 -1.7 RNA helicase compare
PS417_19800 -0.8 -2.1 flagellar motor switch protein FliG compare
PS417_09625 -0.8 -2.8 sugar ABC transporter substrate-binding protein compare
PS417_23900 -0.8 -4.0 poly(A) polymerase compare
PS417_20985 -0.8 -0.5 porin compare
PS417_18885 -0.8 -1.2 GntR family transcriptional regulator compare
PS417_24615 -0.7 -0.9 hypothetical protein compare
PS417_01195 -0.7 -1.8 RNA-binding protein S4 compare
PS417_24370 -0.7 -0.7 (2Fe-2S)-binding protein compare
PS417_23095 -0.7 -1.0 exodeoxyribonuclease compare
PS417_00510 -0.7 -1.1 membrane protein compare
PS417_26605 -0.7 -1.0 malonate decarboxylase subunit beta compare
PS417_06150 -0.7 -1.6 SAM-dependent methlyltransferase compare
PS417_11715 -0.7 -1.9 chromophore maturation protein PvdO compare
PS417_19350 -0.7 -2.5 GTP cyclohydrolase compare
PS417_15090 -0.7 -1.2 hypothetical protein compare
PS417_22570 -0.7 -0.6 H-NS histone compare
PS417_12280 -0.7 -1.6 MerR family transcriptional regulator compare
PS417_02885 -0.7 -1.5 hypothetical protein compare
PS417_02480 -0.7 -2.8 DNA mismatch repair protein compare
PS417_19835 -0.7 -0.9 flagellar biosynthesis protein FliS compare
PS417_06025 -0.7 -1.6 alpha/beta hydrolase compare
PS417_08410 -0.7 -0.7 hypothetical protein compare
PS417_22895 -0.7 -3.0 tyrosine recombinase XerD compare
PS417_10445 -0.7 -1.9 LysR family transcriptional regulator compare
PS417_01145 -0.7 -0.7 taurine transporter ATP-binding subunit compare
PS417_19840 -0.7 -4.5 flagellar cap protein FliD compare
PS417_00075 -0.7 -1.1 hypothetical protein compare
PS417_19425 -0.7 -0.8 allantoicase compare
PS417_21630 -0.6 -1.1 magnesium transporter compare
PS417_19705 -0.6 -1.9 flagellar biosynthesis regulator FlhF compare
PS417_27785 -0.6 -3.6 phosphoglucomutase compare
PS417_06895 -0.6 -2.0 DNA-binding protein compare
PS417_24430 -0.6 -1.2 3-dehydroquinate dehydratase compare
PS417_24575 -0.6 -1.0 hypothetical protein compare
PS417_27245 -0.6 -1.3 aminotransferase DegT compare
PS417_19125 -0.6 -1.6 LysR family transcriptional regulator compare
PS417_23950 -0.6 -0.9 polynucleotide phosphorylase/polyadenylase compare
PS417_07700 -0.6 -1.1 chromosome partitioning protein ParA compare
PS417_09620 -0.6 -3.9 lipopolysaccharide biosynthesis protein compare
PS417_12310 -0.6 -2.5 methionine synthase compare
PS417_18040 -0.6 -1.1 general secretion pathway protein GspN compare
PS417_26850 -0.6 -0.6 twin-arginine translocation pathway signal protein compare
PS417_23370 -0.6 -1.5 protoheme IX farnesyltransferase compare
PS417_16510 -0.6 -1.8 Clp protease ClpX compare
PS417_08170 -0.6 -3.9 capsular biosynthesis protein compare
PS417_00385 -0.6 -0.8 Fur family transcriptional regulator compare
PS417_03465 -0.6 -1.2 type III secretion protein compare
PS417_14065 -0.6 -2.7 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_01850 -0.6 -2.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_17610 -0.6 -1.2 AsnC family transcriptional regulator compare
PS417_12490 -0.6 -1.2 autotransporter adhesin compare
PS417_10275 -0.6 -1.2 histidine kinase compare
PS417_16320 -0.6 -1.7 protein tyrosine phosphatase compare
PS417_02270 -0.6 -1.9 carbamoyltransferase compare
PS417_27705 -0.6 -1.0 amino acid dehydrogenase compare
PS417_05445 -0.6 -1.0 DNA mismatch repair protein MutT compare
PS417_22050 -0.6 -2.0 ribonuclease BN compare
PS417_07565 -0.6 -1.4 hypothetical protein compare
PS417_02865 -0.6 -1.6 peptidase compare
PS417_05140 -0.6 -1.3 dipicolinate synthase compare
PS417_21090 -0.6 -2.0 hypothetical protein compare
PS417_22195 -0.6 -2.1 peptidase compare
PS417_19860 -0.6 -4.3 flagellar hook protein FlgL compare
PS417_19275 -0.6 -0.8 hypothetical protein compare
PS417_11180 -0.6 -2.0 TetR family transcriptional regulator compare
PS417_06885 -0.6 -1.9 dihydrodipicolinate synthase compare
PS417_18310 -0.6 -0.4 hypothetical protein compare
PS417_12005 -0.6 -1.8 hypothetical protein compare
PS417_14980 -0.5 -0.8 universal stress protein UspA compare
PS417_07710 -0.5 -1.5 membrane protein compare
PS417_07640 -0.5 -1.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_22795 -0.5 -1.1 exclusion suppressor FxsA compare
PS417_05580 -0.5 -3.6 glycerol uptake facilitator GlpF compare
PS417_19730 -0.5 -2.1 flagellar biosynthesis protein FliR compare
PS417_19935 -0.5 -2.2 hypothetical protein compare
PS417_14100 -0.5 -2.1 alpha-ketoglutarate-dependent dioxygenase compare
PS417_24785 -0.5 -1.3 nucleoside-diphosphate sugar epimerase compare
PS417_20775 -0.5 -1.6 coproporphyrinogen III oxidase compare
PS417_15915 -0.5 -1.0 hypothetical protein compare
PS417_26155 -0.5 -1.1 hypothetical protein compare
PS417_01430 -0.5 -2.0 chromosome segregation protein SMC compare
PS417_26260 -0.5 -1.1 hypothetical protein compare
PS417_09470 -0.5 -0.8 hypothetical protein compare
PS417_11075 -0.5 -1.5 hydroxypyruvate isomerase compare
PS417_15480 -0.5 -1.3 ABC transporter substrate-binding protein compare
PS417_26985 -0.5 -2.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_11520 -0.5 -1.7 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_03920 -0.5 -1.9 dephospho-CoA kinase compare
PS417_15095 -0.5 -1.3 hypothetical protein compare
PS417_15035 -0.5 -1.0 alkylhydroperoxidase compare
PS417_05200 -0.5 -1.7 DNA recombination protein RecO compare
PS417_12455 -0.5 -0.8 hydrolase compare
PS417_16715 -0.5 -1.1 DoxX family protein compare
PS417_22620 -0.5 -1.5 pyruvate kinase compare
PS417_21285 -0.5 -1.6 hypothetical protein compare
PS417_10120 -0.5 -1.8 hypothetical protein compare
PS417_08105 -0.5 -4.0 N-ethylammeline chlorohydrolase compare
PS417_22040 -0.5 -2.2 GNAT family acetyltransferase compare
PS417_06200 -0.5 -2.6 protein-PII uridylyltransferase compare
PS417_13710 -0.5 -1.7 hypothetical protein compare
PS417_23385 -0.5 -2.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_03830 -0.5 -3.1 protein disaggregation chaperone compare
PS417_10685 -0.5 -2.4 acyl-CoA dehydrogenase compare
PS417_04365 -0.5 -0.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_19955 -0.5 -0.4 hypothetical protein compare
PS417_27605 -0.5 -2.7 hypothetical protein compare
PS417_02975 -0.5 -1.1 3-dehydroquinate dehydratase compare
PS417_14015 -0.5 -2.1 LysR family transcriptional regulator compare
PS417_05040 -0.5 -1.6 amino acid dehydrogenase compare
PS417_14635 -0.5 -1.9 GDSL family lipase compare
PS417_02510 -0.5 -1.1 ATP phosphoribosyltransferase regulatory subunit compare
PS417_28075 -0.5 -1.7 phosphate ABC transporter permease compare
PS417_00450 -0.5 -2.1 chemotaxis protein CheY compare
PS417_23250 -0.5 -1.9 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_03310 -0.5 -1.6 carbonate dehydratase compare
PS417_23045 -0.5 -1.9 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_19160 -0.5 -1.7 hypothetical protein compare
PS417_01560 -0.5 -1.1 imidazoleglycerol-phosphate dehydratase compare
PS417_02355 -0.5 -2.8 thiamine biosynthesis protein ThiC compare
PS417_19305 -0.5 -1.8 acireductone dioxygenase compare
PS417_07540 -0.5 -1.5 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_18600 -0.5 -0.9 isopropylmalate isomerase compare
PS417_10330 -0.5 -1.5 histidine kinase compare
PS417_23135 -0.5 -0.5 GTP-binding protein compare
PS417_04270 -0.5 -2.7 ribonuclease G compare
PS417_16735 -0.5 -1.8 aldehyde dehydrogenase compare
PS417_25390 -0.5 -1.3 MFS transporter compare
PS417_23545 -0.5 -0.7 gamma-glutamyl kinase compare
PS417_09085 -0.4 -0.8 hypothetical protein compare
PS417_06095 -0.4 -0.8 energy transducer TonB compare
PS417_14880 -0.4 -1.3 thioesterase compare
PS417_22575 -0.4 -2.6 exonuclease I compare
PS417_11725 -0.4 -1.5 peptidase M19 compare
PS417_13240 -0.4 -1.1 siderophore biosynthesis protein compare
PS417_11875 -0.4 -2.3 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare


Specific Phenotypes

For 1 genes in this experiment

For solid stress Scopoletin in Pseudomonas simiae WCS417

For solid stress Scopoletin across organisms