Experiment set32S507 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 3 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -5.0 -4.9 pantoate--beta-alanine ligase compare
PS417_16555 -3.9 -2.7 cupin compare
PS417_03260 -3.0 -1.4 5S ribosomal RNA compare
PS417_09600 -2.9 -4.3 glycosyl transferase family 1 compare
PS417_27195 -2.8 -2.1 N-acetylglutamate synthase compare
PS417_01915 -2.8 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_27870 -2.7 -3.2 ATP-dependent DNA helicase RecG compare
PS417_06680 -2.6 -5.8 nuclease PIN compare
PS417_04380 -2.5 -1.5 ABC transporter permease compare
PS417_22450 -2.4 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_09590 -2.4 -8.8 membrane protein compare
PS417_02880 -2.3 -2.0 copper chaperone compare
PS417_10645 -2.2 -5.9 magnesium ABC transporter ATPase compare
PS417_13510 -2.2 -1.6 polyketide cyclase compare
PS417_05595 -2.2 -9.7 ornithine carbamoyltransferase compare
PS417_03830 -2.1 -8.1 protein disaggregation chaperone compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_08125 -2.0 -0.7 prephenate dehydratase compare
PS417_22565 -2.0 -0.7 formyltetrahydrofolate deformylase compare
PS417_02555 -2.0 -10.4 exoribonuclease R compare
PS417_02485 -2.0 -3.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_03560 -2.0 -1.9 GTP-binding protein compare
PS417_19350 -2.0 -4.8 GTP cyclohydrolase compare
PS417_28050 -1.8 -1.3 hypothetical protein compare
PS417_16490 -1.7 -1.4 cell division protein FtsK compare
PS417_27425 -1.7 -6.0 exopolyphosphatase compare
PS417_02255 -1.7 -3.7 lipopolysaccharide kinase compare
PS417_04365 -1.7 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_23950 -1.7 -1.5 polynucleotide phosphorylase/polyadenylase compare
PS417_02270 -1.6 -4.1 carbamoyltransferase compare
PS417_21425 -1.6 -1.9 4-amino-4-deoxychorismate lyase compare
PS417_23810 -1.6 -8.7 acetolactate synthase 3 catalytic subunit compare
PS417_21625 -1.5 -1.3 DNA-binding protein compare
PS417_02975 -1.5 -4.9 3-dehydroquinate dehydratase compare
PS417_09615 -1.5 -4.2 glycosyl transferase family 1 compare
PS417_23805 -1.5 -3.6 acetolactate synthase 3 regulatory subunit compare
PS417_24600 -1.5 -7.1 hydrogenase compare
PS417_21430 -1.4 -1.6 3-oxoacyl-ACP synthase compare
PS417_26775 -1.4 -7.5 thiazole synthase compare
PS417_22570 -1.4 -1.0 H-NS histone compare
PS417_07470 -1.4 -1.4 hypothetical protein compare
PS417_08410 -1.4 -2.7 hypothetical protein compare
PS417_25720 -1.4 -7.9 anthranilate synthase component II compare
PS417_21105 -1.4 -6.6 aminodeoxychorismate synthase compare
PS417_23385 -1.4 -5.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_01575 -1.4 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27795 -1.4 -0.7 orotate phosphoribosyltransferase compare
PS417_13075 -1.3 -1.8 hypothetical protein compare
PS417_09595 -1.3 -4.0 membrane protein compare
PS417_09585 -1.3 -4.9 acetyltransferase compare
PS417_04440 -1.3 -2.7 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_27865 -1.3 -2.6 LysR family transcriptional regulator compare
PS417_01855 -1.3 -1.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_23900 -1.3 -6.9 poly(A) polymerase compare
PS417_24615 -1.2 -1.7 hypothetical protein compare
PS417_23390 -1.2 -4.8 ubiquinol oxidase subunit II compare
PS417_23375 -1.2 -1.8 cytochrome C oxidase compare
PS417_01565 -1.2 -4.5 imidazole glycerol phosphate synthase compare
PS417_04420 -1.2 -5.7 histidinol dehydrogenase compare
PS417_24605 -1.2 -2.8 thiamine-phosphate pyrophosphorylase compare
PS417_27245 -1.2 -1.8 aminotransferase DegT compare
PS417_04385 -1.1 -1.9 organic solvent ABC transporter substrate-binding protein compare
PS417_10265 -1.1 -3.2 peptidase compare
PS417_08170 -1.1 -6.5 capsular biosynthesis protein compare
PS417_23370 -1.1 -2.5 protoheme IX farnesyltransferase compare
PS417_22895 -1.1 -6.4 tyrosine recombinase XerD compare
PS417_22445 -1.1 -1.9 ATP-dependent DNA helicase RuvB compare
PS417_06500 -1.1 -1.8 hypothetical protein compare
PS417_09930 -1.1 -1.8 hypothetical protein compare
PS417_03785 -1.1 -2.3 pilus assembly protein PilV compare
PS417_21480 -1.0 -0.9 23S rRNA pseudouridylate synthase compare
PS417_27300 -1.0 -0.8 cell division protein ZapA compare
PS417_15480 -1.0 -2.0 ABC transporter substrate-binding protein compare
PS417_08540 -1.0 -1.9 RNA helicase compare
PS417_06540 -1.0 -1.5 membrane protein compare
PS417_22620 -1.0 -3.9 pyruvate kinase compare
PS417_23910 -1.0 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_23380 -1.0 -2.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_01620 -0.9 -2.7 preprotein translocase subunit SecB compare
PS417_01850 -0.9 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_25700 -0.9 -2.5 cyclic AMP receptor protein compare
PS417_03455 -0.9 -1.4 type III secretion protein compare
PS417_26605 -0.9 -0.9 malonate decarboxylase subunit beta compare
PS417_06530 -0.9 -2.5 membrane protein compare
PS417_04180 -0.9 -2.6 GntR family transcriptional regulator compare
PS417_11400 -0.9 -1.3 phosphoglycerate mutase compare
PS417_22210 -0.9 -1.3 AraC family transcriptional regulator compare
PS417_03000 -0.9 -3.0 translation initiation factor Sui1 compare
PS417_15665 -0.9 -1.5 hypothetical protein compare
PS417_05815 -0.9 -3.3 recombinase RecA compare
PS417_04415 -0.9 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_08580 -0.9 -3.0 histidine kinase compare
PS417_19955 -0.8 -1.0 hypothetical protein compare
PS417_09625 -0.8 -2.0 sugar ABC transporter substrate-binding protein compare
PS417_01945 -0.8 -2.6 nuclease compare
PS417_22375 -0.8 -0.8 cold-shock protein compare
PS417_06200 -0.8 -3.7 protein-PII uridylyltransferase compare
PS417_02510 -0.8 -3.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_24460 -0.8 -1.8 hypothetical protein compare
PS417_07615 -0.8 -3.5 TetR family transcriptional regulator compare
PS417_15705 -0.8 -2.0 nitrate reductase compare
PS417_01285 -0.8 -1.7 haloacid dehalogenase compare
PS417_22575 -0.8 -3.7 exonuclease I compare
PS417_21830 -0.8 -3.1 TetR family transcriptional regulator compare
PS417_04585 -0.7 -1.1 hypothetical protein compare
PS417_14655 -0.7 -1.0 lysine transporter LysE compare
PS417_20985 -0.7 -0.5 porin compare
PS417_02575 -0.7 -2.3 membrane protein compare
PS417_24935 -0.7 -0.9 hypothetical protein compare
PS417_06040 -0.7 -2.3 hypothetical protein compare
PS417_07120 -0.7 -2.7 RNA polymerase sigma-H factor compare
PS417_10810 -0.7 -1.6 hypothetical protein compare
PS417_04220 -0.7 -1.0 4-carboxymuconolactone decarboxylase compare
PS417_13270 -0.7 -1.9 lipoprotein compare
PS417_21515 -0.7 -5.2 transcriptional regulator compare
PS417_17630 -0.7 -1.2 RNA polymerase sigma factor compare
PS417_23590 -0.7 -2.6 bleomycin resistance protein compare
PS417_23825 -0.7 -3.1 penicillin-binding protein compare
PS417_16520 -0.7 -1.8 cold-shock protein compare
PS417_22535 -0.7 -2.9 ornithine acetyltransferase compare
PS417_23490 -0.7 -1.0 dihydrofolate reductase compare
PS417_27705 -0.7 -1.1 amino acid dehydrogenase compare
PS417_11705 -0.7 -3.0 cyclic peptide transporter compare
PS417_26990 -0.7 -0.5 RNA pyrophosphohydrolase compare
PS417_25155 -0.7 -0.8 hypothetical protein compare
PS417_08045 -0.7 -1.2 uracil permease compare
PS417_23995 -0.7 -0.6 preprotein translocase subunit SecG compare
PS417_01490 -0.7 -2.0 ABC transporter permease compare
PS417_17505 -0.7 -1.6 LuxR family transcriptional regulator compare
PS417_16255 -0.7 -1.5 RNA polymerase sigma factor compare
PS417_18395 -0.6 -1.5 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_15975 -0.6 -1.4 glutamate carboxypeptidase compare
PS417_05695 -0.6 -2.7 transcriptional regulator compare
PS417_27515 -0.6 -2.0 heme biosynthesis protein HemY compare
PS417_10405 -0.6 -0.9 filamentous hemagglutinin compare
PS417_18455 -0.6 -1.8 hypothetical protein compare
PS417_07700 -0.6 -1.7 chromosome partitioning protein ParA compare
PS417_28510 -0.6 -2.8 chromosome partitioning protein compare
PS417_09620 -0.6 -4.2 lipopolysaccharide biosynthesis protein compare
PS417_16775 -0.6 -1.6 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_25710 -0.6 -0.6 indole-3-glycerol-phosphate synthase compare
PS417_27715 -0.6 -1.9 Fe-S oxidoreductase compare
PS417_00375 -0.6 -2.1 membrane protein compare
PS417_13290 -0.6 -3.1 AraC family transcriptional regulator compare
PS417_14395 -0.6 -1.9 fe2+ zn2+ uptake regulation protein compare
PS417_20185 -0.6 -2.7 ketosteroid isomerase compare
PS417_15100 -0.6 -1.3 BatB protein compare
PS417_27815 -0.6 -1.1 hypothetical protein compare
PS417_07855 -0.6 -1.6 hypothetical protein compare
PS417_02475 -0.6 -1.5 N-acetylmuramoyl-L-alanine amidase compare
PS417_00075 -0.6 -1.1 hypothetical protein compare
PS417_04410 -0.6 -1.3 hypothetical protein compare
PS417_19065 -0.6 -0.7 monooxygenase compare
PS417_19835 -0.6 -1.1 flagellar biosynthesis protein FliS compare
PS417_19605 -0.6 -0.8 hypothetical protein compare
PS417_15325 -0.6 -0.9 type VI secretion protein compare
PS417_23580 -0.6 -1.0 peptidylprolyl isomerase compare
PS417_14255 -0.6 -1.5 phosphate import ATP-binding protein PstB compare
PS417_21510 -0.6 -1.6 histidine kinase compare
PS417_27305 -0.6 -2.7 5-formyltetrahydrofolate cyclo-ligase compare
PS417_18475 -0.6 -1.7 Pyrrolidone-carboxylate peptidase compare
PS417_02870 -0.6 -3.2 TonB-dependent receptor compare
PS417_11925 -0.6 -1.1 hypothetical protein compare
PS417_27605 -0.6 -3.3 hypothetical protein compare
PS417_10425 -0.6 -0.9 hypothetical protein compare
PS417_28145 -0.6 -1.8 AraC family transcriptional regulator compare
PS417_07420 -0.6 -1.8 restriction endonuclease compare
PS417_21870 -0.6 -1.2 glycerophosphodiester phosphodiesterase compare
PS417_04875 -0.6 -0.7 molybdenum cofactor biosynthesis protein MoaE compare
PS417_26755 -0.6 -1.0 nucleoside-triphosphate diphosphatase compare
PS417_16815 -0.6 -1.7 acyl-CoA dehydrogenase compare
PS417_06205 -0.6 -3.0 methionine aminopeptidase compare
PS417_27595 -0.6 -1.3 recombinase XerC compare
PS417_19590 -0.6 -1.9 enoyl-CoA hydratase compare
PS417_06945 -0.6 -0.7 membrane protein compare
PS417_18740 -0.6 -1.5 acetyltransferase compare
PS417_12595 -0.6 -0.7 transcriptional regulator compare
PS417_02885 -0.6 -1.5 hypothetical protein compare
PS417_27835 -0.6 -2.6 endoribonuclease compare
PS417_17190 -0.6 -1.8 MarR family transcriptional regulator compare
PS417_27115 -0.6 -4.0 putrescine ABC transporter, ATPase component (from data) compare
PS417_20715 -0.6 -0.9 cytochrome Cbb3 compare
PS417_24310 -0.6 -1.2 ankyrin compare
PS417_02210 -0.6 -2.9 diguanylate cyclase compare
PS417_07640 -0.6 -1.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_14115 -0.6 -2.4 molybdate ABC transporter substrate-binding protein compare
PS417_11540 -0.5 -2.1 NAD synthetase compare
PS417_28020 -0.5 -1.8 chorismate--pyruvate lyase compare
PS417_19850 -0.5 -3.7 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_12015 -0.5 -1.2 phosphoglycerate mutase compare
PS417_26995 -0.5 -2.8 phosphoserine phosphatase compare
PS417_11670 -0.5 -1.5 multidrug transporter MATE compare
PS417_18355 -0.5 -3.1 DNA-binding protein compare
PS417_15540 -0.5 -0.8 NUDIX hydrolase compare
PS417_26420 -0.5 -0.7 hypothetical protein compare
PS417_19620 -0.5 -1.0 hypothetical protein compare
PS417_09245 -0.5 -0.9 recombinase RdgC compare
PS417_13755 -0.5 -1.1 oxidoreductase compare
PS417_24705 -0.5 -1.5 D-alanyl-D-alanine carboxypeptidase compare
PS417_06145 -0.5 -0.7 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For solid stress 80% Methanol in Pseudomonas simiae WCS417

For solid stress 80% Methanol across organisms