Experiment set32S507 for Pseudomonas simiae WCS417
80% Methanol 3 mM; solid stress
Group: solid stressMedia: + 80% Methanol (3 mM)
Culturing: fluoroDangl_ML3b
By: Max Stassen on 29-Mar-24
Specific Phenotypes
For 1 genes in this experiment
For solid stress 80% Methanol in Pseudomonas simiae WCS417
For solid stress 80% Methanol across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Chorismate: Intermediate for synthesis of PAPA antibiotics, PABA, anthranilate, 3-hydroxyanthranilate and more. | 1 |
| Folate Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-glutamine degradation I | 1 | 1 | 1 |
| L-glutamate biosynthesis I | 2 | 2 | 1 |
| 4-aminobenzoate biosynthesis I | 2 | 2 | 1 |
| ammonia assimilation cycle III | 3 | 3 | 1 |
| L-asparagine biosynthesis III (tRNA-dependent) | 4 | 4 | 1 |
| glutaminyl-tRNAgln biosynthesis via transamidation | 4 | 4 | 1 |
| L-glutamate and L-glutamine biosynthesis | 7 | 6 | 1 |
| L-citrulline biosynthesis | 8 | 8 | 1 |
| chloramphenicol biosynthesis | 9 | 1 | 1 |
| superpathway of tetrahydrofolate biosynthesis | 10 | 8 | 1 |
| superpathway of candicidin biosynthesis | 11 | 3 | 1 |
| superpathway of tetrahydrofolate biosynthesis and salvage | 12 | 10 | 1 |
| superpathway of L-citrulline metabolism | 12 | 10 | 1 |
| superpathway of chorismate metabolism | 59 | 44 | 1 |