Experiment set32S503 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 2 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_27865 -6.1 -4.2 LysR family transcriptional regulator compare
PS417_27870 -3.8 -2.6 ATP-dependent DNA helicase RecG compare
PS417_27135 -3.7 -1.5 glutamine synthetase compare
PS417_22450 -3.3 -2.2 ATP-dependent DNA helicase RuvA compare
PS417_28050 -3.2 -2.5 hypothetical protein compare
PS417_00660 -2.9 -4.8 DSBA oxidoreductase compare
PS417_23545 -2.9 -3.1 gamma-glutamyl kinase compare
PS417_00650 -2.8 -1.6 LysR family transcriptional regulator compare
PS417_00655 -2.8 -5.7 DSBA oxidoreductase compare
PS417_23380 -2.5 -3.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_23950 -2.5 -2.2 polynucleotide phosphorylase/polyadenylase compare
PS417_01915 -2.5 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_18310 -2.2 -1.5 hypothetical protein compare
PS417_00345 -2.2 -3.0 copper-binding protein compare
PS417_00920 -2.1 -6.1 diguanylate cyclase compare
PS417_26990 -2.0 -1.1 RNA pyrophosphohydrolase compare
PS417_06770 -2.0 -5.3 multidrug transporter compare
PS417_03560 -2.0 -1.8 GTP-binding protein compare
PS417_16555 -2.0 -1.7 cupin compare
PS417_00665 -2.0 -8.1 RND transporter compare
PS417_04380 -2.0 -1.3 ABC transporter permease compare
PS417_00510 -2.0 -1.9 membrane protein compare
PS417_07615 -2.0 -6.4 TetR family transcriptional regulator compare
PS417_23915 -1.9 -2.9 pantoate--beta-alanine ligase compare
PS417_06680 -1.9 -5.0 nuclease PIN compare
PS417_06685 -1.9 -1.3 beta-ketoadipyl CoA thiolase compare
PS417_26730 -1.8 -1.0 pyrroline-5-carboxylate reductase compare
PS417_03300 -1.8 -2.6 alanine acetyltransferase compare
PS417_08125 -1.7 -0.7 prephenate dehydratase compare
PS417_01605 -1.7 -1.4 phosphoglycerate mutase compare
PS417_06375 -1.7 -0.7 deoxycytidine triphosphate deaminase compare
PS417_01855 -1.7 -2.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_15095 -1.7 -3.4 hypothetical protein compare
PS417_24705 -1.7 -3.2 D-alanyl-D-alanine carboxypeptidase compare
PS417_10645 -1.6 -4.9 magnesium ABC transporter ATPase compare
PS417_24600 -1.6 -6.1 hydrogenase compare
PS417_06775 -1.6 -5.2 antibiotic transporter compare
PS417_27300 -1.6 -1.1 cell division protein ZapA compare
PS417_05365 -1.5 -2.1 FAD-binding protein compare
PS417_27605 -1.5 -4.9 hypothetical protein compare
PS417_23375 -1.5 -2.1 cytochrome C oxidase compare
PS417_26985 -1.5 -4.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08155 -1.5 -1.4 integration host factor subunit beta compare
PS417_26775 -1.4 -7.5 thiazole synthase compare
PS417_23390 -1.4 -5.0 ubiquinol oxidase subunit II compare
PS417_28070 -1.4 -7.4 phosphate ABC transporter ATP-binding protein compare
PS417_05590 -1.3 -4.2 iron ABC transporter ATP-binding protein compare
PS417_20855 -1.3 -1.6 hypothetical protein compare
PS417_02800 -1.3 -2.2 acetyltransferase compare
PS417_23385 -1.3 -5.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_24605 -1.3 -2.8 thiamine-phosphate pyrophosphorylase compare
PS417_27835 -1.2 -5.0 endoribonuclease compare
PS417_02555 -1.2 -6.4 exoribonuclease R compare
PS417_08090 -1.2 -1.0 3-oxoacyl-ACP reductase compare
PS417_24745 -1.2 -1.8 gamma-glutamyl phosphate reductase compare
PS417_24710 -1.2 -6.5 lipoprotein compare
PS417_01565 -1.2 -3.1 imidazole glycerol phosphate synthase compare
PS417_09600 -1.2 -4.4 glycosyl transferase family 1 compare
PS417_28080 -1.2 -8.9 phosphate ABC transporter permease compare
PS417_15540 -1.2 -1.8 NUDIX hydrolase compare
PS417_28075 -1.1 -5.8 phosphate ABC transporter permease compare
PS417_02975 -1.1 -3.5 3-dehydroquinate dehydratase compare
PS417_00045 -1.1 -1.6 glycerol acyltransferase compare
PS417_24615 -1.1 -1.5 hypothetical protein compare
PS417_01580 -1.1 -1.5 imidazole glycerol phosphate synthase compare
PS417_02880 -1.1 -1.4 copper chaperone compare
PS417_27290 -1.1 -1.7 hypothetical protein compare
PS417_20880 -1.0 -2.9 GntR family transcriptional regulator compare
PS417_04365 -1.0 -0.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_18545 -1.0 -2.6 cell division protein compare
PS417_08335 -1.0 -1.7 hypothetical protein compare
PS417_19415 -1.0 -3.3 allantoinase compare
PS417_18370 -1.0 -2.2 hypothetical protein compare
PS417_28085 -1.0 -7.5 phosphate-binding protein compare
PS417_22620 -1.0 -3.5 pyruvate kinase compare
PS417_09625 -1.0 -3.2 sugar ABC transporter substrate-binding protein compare
PS417_01620 -1.0 -1.9 preprotein translocase subunit SecB compare
PS417_21480 -1.0 -1.2 23S rRNA pseudouridylate synthase compare
PS417_23370 -0.9 -3.1 protoheme IX farnesyltransferase compare
PS417_17215 -0.9 -1.7 peptidylprolyl isomerase compare
PS417_08170 -0.9 -6.3 capsular biosynthesis protein compare
PS417_08410 -0.9 -1.3 hypothetical protein compare
PS417_07695 -0.9 -4.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_19425 -0.9 -1.0 allantoicase compare
PS417_00550 -0.9 -1.0 hypothetical protein compare
PS417_00810 -0.9 -1.5 RNA polymerase sigma factor compare
PS417_02415 -0.9 -3.1 phosphoserine phosphatase compare
PS417_13455 -0.9 -2.4 alkaline proteinase inhibitor compare
PS417_01850 -0.9 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_12005 -0.9 -3.2 hypothetical protein compare
PS417_02225 -0.9 -1.9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_01920 -0.9 -0.8 ATP-dependent protease subunit HslV compare
PS417_01955 -0.9 -5.2 peptidase compare
PS417_15035 -0.9 -1.5 alkylhydroperoxidase compare
PS417_01715 -0.9 -1.2 hypothetical protein compare
PS417_24650 -0.9 -1.6 membrane protein compare
PS417_05595 -0.9 -4.9 ornithine carbamoyltransferase compare
PS417_16360 -0.9 -3.4 histidine kinase compare
PS417_07710 -0.9 -1.7 membrane protein compare
PS417_27425 -0.9 -4.0 exopolyphosphatase compare
PS417_08365 -0.9 -0.9 hypothetical protein compare
PS417_23995 -0.9 -0.7 preprotein translocase subunit SecG compare
PS417_19955 -0.8 -1.2 hypothetical protein compare
PS417_09630 -0.8 -3.6 glycosyl transferase compare
PS417_08580 -0.8 -2.7 histidine kinase compare
PS417_22530 -0.8 -3.6 hypothetical protein compare
PS417_27610 -0.8 -4.5 hypothetical protein compare
PS417_15030 -0.8 -1.2 short-chain dehydrogenase compare
PS417_06895 -0.8 -1.9 DNA-binding protein compare
PS417_22575 -0.8 -5.0 exonuclease I compare
PS417_22895 -0.8 -4.7 tyrosine recombinase XerD compare
PS417_22195 -0.8 -3.8 peptidase compare
PS417_27640 -0.8 -1.0 TetR family transcriptional regulator compare
PS417_04305 -0.8 -1.1 aspartate ammonia-lyase compare
PS417_15480 -0.8 -1.4 ABC transporter substrate-binding protein compare
PS417_23105 -0.8 -0.9 hypothetical protein compare
PS417_01575 -0.8 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_21360 -0.8 -0.9 termination factor Rho compare
PS417_09590 -0.8 -1.9 membrane protein compare
PS417_06365 -0.8 -3.8 RNA polymerase sigma factor compare
PS417_09210 -0.8 -1.6 TetR family transcriptional regulator compare
PS417_07470 -0.8 -1.3 hypothetical protein compare
PS417_23475 -0.8 -1.2 hypothetical protein compare
PS417_15975 -0.8 -1.7 glutamate carboxypeptidase compare
PS417_03990 -0.8 -5.5 ligand-gated channel protein compare
PS417_15090 -0.8 -1.4 hypothetical protein compare
PS417_19350 -0.8 -2.6 GTP cyclohydrolase compare
PS417_04420 -0.8 -3.6 histidinol dehydrogenase compare
PS417_15110 -0.7 -4.5 protein BatD compare
PS417_06100 -0.7 -1.4 SAM-dependent methyltransferase compare
PS417_09615 -0.7 -2.9 glycosyl transferase family 1 compare
PS417_26995 -0.7 -3.4 phosphoserine phosphatase compare
PS417_12490 -0.7 -1.5 autotransporter adhesin compare
PS417_19650 -0.7 -2.2 chemotaxis protein CheW compare
PS417_02575 -0.7 -2.9 membrane protein compare
PS417_08540 -0.7 -1.5 RNA helicase compare
PS417_00370 -0.7 -0.7 hypothetical protein compare
PS417_04385 -0.7 -1.1 organic solvent ABC transporter substrate-binding protein compare
PS417_03465 -0.7 -0.8 type III secretion protein compare
PS417_21320 -0.7 -2.8 transcriptional regulator compare
PS417_23820 -0.7 -2.5 hypothetical protein compare
PS417_09730 -0.7 -1.2 adenylylsulfate kinase compare
PS417_24620 -0.7 -1.2 hypothetical protein compare
PS417_27690 -0.7 -2.9 XRE family transcriptional regulator compare
PS417_27585 -0.7 -1.2 diaminopimelate epimerase compare
PS417_22935 -0.7 -1.3 hypothetical protein compare
PS417_16370 -0.7 -4.1 chemotaxis protein CheY compare
PS417_21425 -0.7 -1.5 4-amino-4-deoxychorismate lyase compare
PS417_18420 -0.7 -1.9 deoxyribonuclease compare
PS417_26120 -0.7 -1.0 hypothetical protein compare
PS417_02560 -0.7 -0.7 23S rRNA methyltransferase compare
PS417_15085 -0.7 -2.4 ATPase AAA compare
PS417_06490 -0.7 -2.1 hypothetical protein compare
PS417_27315 -0.7 -0.9 hypothetical protein compare
PS417_24935 -0.7 -0.8 hypothetical protein compare
PS417_02255 -0.7 -2.2 lipopolysaccharide kinase compare
PS417_00845 -0.7 -1.2 transcriptional regulator compare
PS417_07120 -0.7 -3.3 RNA polymerase sigma-H factor compare
PS417_09635 -0.7 -3.9 mannose-1-phosphate guanylyltransferase compare
PS417_27295 -0.7 -2.7 hypothetical protein compare
PS417_23095 -0.7 -0.9 exodeoxyribonuclease compare
PS417_05985 -0.7 -1.2 chemotaxis protein CheY compare
PS417_15895 -0.7 -2.0 iron dicitrate transport regulator FecR compare
PS417_22735 -0.7 -3.9 thiol oxidoreductase compare
PS417_22690 -0.7 -1.0 phosphogluconate dehydratase compare
PS417_18425 -0.7 -1.0 sporulation protein compare
PS417_05650 -0.7 -2.4 leucyl-tRNA synthetase compare
PS417_04000 -0.7 -4.4 hypothetical protein compare
PS417_05860 -0.7 -1.8 hypothetical protein compare
PS417_09595 -0.6 -2.7 membrane protein compare
PS417_06735 -0.6 -1.7 3-oxoadipate enol-lactonase compare
PS417_20125 -0.6 -2.0 phosphoribosylglycinamide formyltransferase compare
PS417_10720 -0.6 -3.1 chemotaxis protein CheY compare
PS417_26605 -0.6 -0.8 malonate decarboxylase subunit beta compare
PS417_04270 -0.6 -3.2 ribonuclease G compare
PS417_09930 -0.6 -1.1 hypothetical protein compare
PS417_02485 -0.6 -1.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_12755 -0.6 -1.8 RND transporter compare
PS417_08990 -0.6 -1.7 ABC transporter substrate-binding protein compare
PS417_09620 -0.6 -3.8 lipopolysaccharide biosynthesis protein compare
PS417_01185 -0.6 -3.3 ribosomal protein S6 modification protein compare
PS417_19160 -0.6 -2.3 hypothetical protein compare
PS417_07165 -0.6 -2.0 dihydrodipicolinate synthase compare
PS417_07940 -0.6 -1.7 hypothetical protein compare
PS417_14045 -0.6 -1.3 alkyl hydroperoxide reductase compare
PS417_05695 -0.6 -2.4 transcriptional regulator compare
PS417_24225 -0.6 -1.3 hypothetical protein compare
PS417_14515 -0.6 -1.1 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_24800 -0.6 -2.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_09160 -0.6 -1.3 GNAT family acetyltransferase compare
PS417_25720 -0.6 -3.8 anthranilate synthase component II compare
PS417_12280 -0.6 -1.0 MerR family transcriptional regulator compare
PS417_10185 -0.6 -2.0 hypothetical protein compare
PS417_26815 -0.6 -0.9 peptidase M16 compare
PS417_08680 -0.6 -1.1 flagellar biosynthesis protein FlhB compare
PS417_25765 -0.6 -1.3 transcriptional regulator compare
PS417_27360 -0.6 -2.8 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_27515 -0.6 -1.8 heme biosynthesis protein HemY compare
PS417_04595 -0.6 -1.1 cell division protein MraZ compare
PS417_05815 -0.6 -1.8 recombinase RecA compare


Specific Phenotypes

For 2 genes in this experiment

For liquid stress Fraxetin in Pseudomonas simiae WCS417

For liquid stress Fraxetin across organisms