Experiment set32S502 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 1 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_21480 -4.4 -3.0 23S rRNA pseudouridylate synthase compare
PS417_23915 -3.8 -5.1 pantoate--beta-alanine ligase compare
PS417_27865 -3.7 -4.4 LysR family transcriptional regulator compare
PS417_03260 -2.9 -1.5 5S ribosomal RNA compare
PS417_28050 -2.9 -3.1 hypothetical protein compare
PS417_23950 -2.7 -2.4 polynucleotide phosphorylase/polyadenylase compare
PS417_01915 -2.6 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_01580 -2.4 -2.4 imidazole glycerol phosphate synthase compare
PS417_02720 -2.4 -1.6 TetR family transcriptional regulator compare
PS417_04380 -2.3 -1.6 ABC transporter permease compare
PS417_26990 -2.2 -1.2 RNA pyrophosphohydrolase compare
PS417_22450 -2.2 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_06680 -2.2 -5.6 nuclease PIN compare
PS417_02280 -2.1 -1.7 GlcNAc-PI de-N-acetylase compare
PS417_27195 -2.1 -1.9 N-acetylglutamate synthase compare
PS417_23545 -1.9 -2.6 gamma-glutamyl kinase compare
PS417_08125 -1.9 -0.7 prephenate dehydratase compare
PS417_06375 -1.9 -0.7 deoxycytidine triphosphate deaminase compare
PS417_24745 -1.8 -3.0 gamma-glutamyl phosphate reductase compare
PS417_24605 -1.8 -4.5 thiamine-phosphate pyrophosphorylase compare
PS417_24600 -1.8 -5.5 hydrogenase compare
PS417_00650 -1.7 -1.3 LysR family transcriptional regulator compare
PS417_04365 -1.6 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02255 -1.6 -1.8 lipopolysaccharide kinase compare
PS417_26775 -1.5 -7.4 thiazole synthase compare
PS417_06245 -1.4 -1.2 zinc metallopeptidase RseP compare
PS417_19350 -1.4 -4.2 GTP cyclohydrolase compare
PS417_26605 -1.4 -1.5 malonate decarboxylase subunit beta compare
PS417_02270 -1.4 -3.7 carbamoyltransferase compare
PS417_10645 -1.3 -3.8 magnesium ABC transporter ATPase compare
PS417_27870 -1.3 -2.2 ATP-dependent DNA helicase RecG compare
PS417_06775 -1.2 -4.5 antibiotic transporter compare
PS417_24895 -1.2 -1.9 hypothetical protein compare
PS417_08410 -1.2 -1.9 hypothetical protein compare
PS417_02555 -1.2 -6.2 exoribonuclease R compare
PS417_17795 -1.2 -1.8 ABC transporter permease compare
PS417_01855 -1.1 -2.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_00045 -1.1 -1.6 glycerol acyltransferase compare
PS417_15465 -1.1 -3.1 carboxynorspermidine decarboxylase compare
PS417_24615 -1.1 -1.5 hypothetical protein compare
PS417_01920 -1.0 -1.0 ATP-dependent protease subunit HslV compare
PS417_24935 -1.0 -1.1 hypothetical protein compare
PS417_04390 -1.0 -2.2 toluene tolerance protein compare
PS417_10675 -1.0 -1.2 TetR family transcriptional regulator compare
PS417_00655 -1.0 -4.9 DSBA oxidoreductase compare
PS417_00180 -1.0 -1.8 tryptophan synthase subunit alpha compare
PS417_07560 -1.0 -1.2 universal stress protein UspA compare
PS417_15805 -1.0 -1.7 transporter compare
PS417_02485 -0.9 -1.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_04385 -0.9 -1.5 organic solvent ABC transporter substrate-binding protein compare
PS417_00665 -0.9 -5.1 RND transporter compare
PS417_06770 -0.9 -3.1 multidrug transporter compare
PS417_06500 -0.9 -1.6 hypothetical protein compare
PS417_24710 -0.9 -4.6 lipoprotein compare
PS417_06685 -0.9 -0.8 beta-ketoadipyl CoA thiolase compare
PS417_02370 -0.9 -1.8 ADP-ribose pyrophosphatase compare
PS417_13510 -0.9 -1.0 polyketide cyclase compare
PS417_27300 -0.9 -0.7 cell division protein ZapA compare
PS417_00660 -0.8 -1.9 DSBA oxidoreductase compare
PS417_19675 -0.8 -2.7 chemotaxis protein CheY compare
PS417_01290 -0.8 -1.6 ADP-ribose diphosphatase compare
PS417_01270 -0.8 -1.0 iron ABC transporter substrate-binding protein compare
PS417_12535 -0.8 -2.1 nitrilase compare
PS417_23375 -0.8 -1.4 cytochrome C oxidase compare
PS417_06145 -0.8 -1.0 hypothetical protein compare
PS417_04340 -0.8 -3.1 ribosome hibernation promoting factor HPF compare
PS417_04305 -0.8 -1.3 aspartate ammonia-lyase compare
PS417_07695 -0.8 -3.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_23855 -0.8 -0.9 ABC transporter substrate-binding protein compare
PS417_22705 -0.8 -1.8 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_06335 -0.8 -2.3 S-formylglutathione hydrolase compare
PS417_23810 -0.7 -4.3 acetolactate synthase 3 catalytic subunit compare
PS417_04440 -0.7 -2.0 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_17375 -0.7 -1.9 C4-dicarboxylate ABC transporter compare
PS417_10060 -0.7 -1.8 hypothetical protein compare
PS417_17050 -0.7 -2.2 transcriptional regulator compare
PS417_22690 -0.7 -1.3 phosphogluconate dehydratase compare
PS417_07820 -0.7 -1.6 transposase compare
PS417_12390 -0.7 -1.8 hypothetical protein compare
PS417_04375 -0.7 -0.8 ABC transporter ATP-binding protein compare
PS417_05365 -0.7 -1.3 FAD-binding protein compare
PS417_01955 -0.7 -4.4 peptidase compare
PS417_04650 -0.7 -0.4 D-alanine--D-alanine ligase compare
PS417_13455 -0.7 -1.8 alkaline proteinase inhibitor compare
PS417_22445 -0.7 -1.5 ATP-dependent DNA helicase RuvB compare
PS417_27605 -0.7 -2.4 hypothetical protein compare
PS417_10025 -0.7 -1.3 bacteriophage lambda NinG family protein compare
PS417_26850 -0.7 -0.7 twin-arginine translocation pathway signal protein compare
PS417_02975 -0.7 -2.2 3-dehydroquinate dehydratase compare
PS417_19415 -0.7 -2.3 allantoinase compare
PS417_23390 -0.7 -2.1 ubiquinol oxidase subunit II compare
PS417_24650 -0.7 -1.5 membrane protein compare
PS417_18070 -0.7 -0.9 general secretion pathway protein GspH compare
PS417_01030 -0.7 -1.1 glutamine ABC transporter substrate-binding protein compare
PS417_17705 -0.7 -1.3 LacI family transcriptional regulator compare
PS417_23805 -0.7 -2.0 acetolactate synthase 3 regulatory subunit compare
PS417_05235 -0.7 -1.5 peptidase inhibitor I42 compare
PS417_26220 -0.6 -2.0 Rieske (2Fe-2S) protein compare
PS417_00510 -0.6 -0.9 membrane protein compare
PS417_26335 -0.6 -1.6 BetI family transcriptional regulator compare
PS417_27245 -0.6 -1.3 aminotransferase DegT compare
PS417_03935 -0.6 -1.8 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_06675 -0.6 -1.6 ATP-dependent helicase compare
PS417_01565 -0.6 -1.5 imidazole glycerol phosphate synthase compare
PS417_05445 -0.6 -1.0 DNA mismatch repair protein MutT compare
PS417_23825 -0.6 -2.2 penicillin-binding protein compare
PS417_21105 -0.6 -4.1 aminodeoxychorismate synthase compare
PS417_10125 -0.6 -1.6 hypothetical protein compare
PS417_11615 -0.6 -1.4 urea ABC transporter ATP-binding protein compare
PS417_13425 -0.6 -1.8 cupin compare
PS417_08130 -0.6 -1.3 aspartate aminotransferase compare
PS417_28225 -0.6 -1.0 hypothetical protein compare
PS417_08790 -0.6 -2.9 pyruvate kinase compare
PS417_18395 -0.6 -1.3 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_01590 -0.6 -0.8 polysaccharide deacetylase compare
PS417_25710 -0.6 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_27835 -0.6 -3.0 endoribonuclease compare
PS417_02385 -0.6 -0.9 esterase compare
PS417_05595 -0.6 -3.5 ornithine carbamoyltransferase compare
PS417_19755 -0.6 -1.3 flagellar motor switch protein FliM compare
PS417_15135 -0.6 -1.2 hypothetical protein compare
PS417_07140 -0.6 -1.3 peptidase M48 compare
PS417_16000 -0.6 -1.6 chemotaxis protein CheY compare
PS417_21425 -0.6 -0.9 4-amino-4-deoxychorismate lyase compare
PS417_26645 -0.6 -1.1 chemotaxis protein compare
PS417_05160 -0.6 -0.6 DNA polymerase III subunit chi compare
PS417_22570 -0.6 -0.5 H-NS histone compare
PS417_19360 -0.6 -1.2 hypothetical protein compare
PS417_13490 -0.6 -1.1 hypothetical protein compare
PS417_08090 -0.6 -0.4 3-oxoacyl-ACP reductase compare
PS417_17505 -0.6 -1.9 LuxR family transcriptional regulator compare
PS417_09730 -0.5 -1.2 adenylylsulfate kinase compare
PS417_17215 -0.5 -1.3 peptidylprolyl isomerase compare
PS417_25320 -0.5 -3.4 dTDP-4-dehydrorhamnose reductase compare
PS417_23385 -0.5 -3.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_14980 -0.5 -0.8 universal stress protein UspA compare
PS417_27180 -0.5 -1.3 peroxidase compare
PS417_02880 -0.5 -0.8 copper chaperone compare
PS417_05790 -0.5 -1.2 hypothetical protein compare
PS417_19325 -0.5 -1.8 hypothetical protein compare
PS417_01715 -0.5 -0.9 hypothetical protein compare
PS417_11360 -0.5 -2.0 energy transducer TonB compare
PS417_13145 -0.5 -1.0 50S ribosomal protein L21 compare
PS417_10185 -0.5 -1.6 hypothetical protein compare
PS417_26340 -0.5 -2.2 betaine-aldehyde dehydrogenase compare
PS417_02705 -0.5 -1.3 urease accessory protein UreF compare
PS417_12855 -0.5 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_13205 -0.5 -1.2 isochorismate-pyruvate lyase compare
PS417_07710 -0.5 -1.3 membrane protein compare
PS417_01195 -0.5 -1.5 RNA-binding protein S4 compare
PS417_28080 -0.5 -4.1 phosphate ABC transporter permease compare
PS417_15095 -0.5 -1.5 hypothetical protein compare
PS417_17930 -0.5 -1.7 aldehyde dehydrogenase compare
PS417_27290 -0.5 -1.1 hypothetical protein compare
PS417_12005 -0.5 -1.6 hypothetical protein compare
PS417_19995 -0.5 -3.4 Long-chain fatty acid transport protein compare
PS417_01435 -0.5 -0.9 hypothetical protein compare
PS417_17980 -0.5 -1.2 ABC transporter permease compare
PS417_05815 -0.5 -1.7 recombinase RecA compare
PS417_06095 -0.5 -1.0 energy transducer TonB compare
PS417_27350 -0.5 -2.3 calcium transporter ChaC compare
PS417_02780 -0.5 -2.2 DNA-binding protein compare
PS417_22935 -0.5 -1.0 hypothetical protein compare
PS417_06600 -0.5 -0.6 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_22530 -0.5 -2.5 hypothetical protein compare
PS417_24675 -0.5 -1.2 lipoyl synthase compare
PS417_00375 -0.5 -1.9 membrane protein compare
PS417_11760 -0.5 -1.5 Fis family transcriptional regulator compare
PS417_01285 -0.5 -1.1 haloacid dehalogenase compare
PS417_11715 -0.5 -1.8 chromophore maturation protein PvdO compare
PS417_21680 -0.5 -2.5 succinylglutamate desuccinylase compare
PS417_03995 -0.5 -1.2 Fe(II)-dependent oxygenase compare
PS417_09220 -0.5 -0.9 cupin compare
PS417_16685 -0.5 -2.5 multidrug MFS transporter compare
PS417_20840 -0.5 -3.1 hypothetical protein compare
PS417_13100 -0.5 -2.9 ABC transporter ATP-binding protein compare
PS417_05695 -0.5 -1.8 transcriptional regulator compare
PS417_10490 -0.5 -2.0 delta-aminolevulinic acid dehydratase compare
PS417_04270 -0.5 -2.8 ribonuclease G compare
PS417_04170 -0.5 -1.9 stringent starvation protein A compare
PS417_03495 -0.5 -0.9 type III secretory protein EscS compare
PS417_05500 -0.5 -1.0 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_01575 -0.5 -1.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_04310 -0.5 -1.6 hypothetical protein compare
PS417_26985 -0.5 -3.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_13990 -0.5 -1.1 LysR family transcriptional regulator compare
PS417_13055 -0.5 -0.8 aminotransferase compare
PS417_09575 -0.5 -1.2 glutathione S-transferase compare
PS417_26805 -0.5 -0.6 cell division protein FtsE compare
PS417_08990 -0.5 -1.4 ABC transporter substrate-binding protein compare
PS417_07615 -0.5 -1.6 TetR family transcriptional regulator compare
PS417_02415 -0.5 -1.3 phosphoserine phosphatase compare
PS417_00475 -0.5 -2.1 membrane protein compare
PS417_03465 -0.5 -1.0 type III secretion protein compare
PS417_14015 -0.5 -2.1 LysR family transcriptional regulator compare
PS417_24990 -0.5 -1.4 exotoxin compare
PS417_17995 -0.4 -1.2 hypothetical protein compare
PS417_20130 -0.4 -3.2 dehydrogenase compare
PS417_23520 -0.4 -1.4 cysteine biosynthesis protein CysZ compare
PS417_20185 -0.4 -1.5 ketosteroid isomerase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress Fraxetin across organisms