Experiment set32S501 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 0.5 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_28050 -2.7 -3.1 hypothetical protein compare
PS417_04365 -2.6 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_03560 -2.6 -2.5 GTP-binding protein compare
PS417_06680 -2.5 -5.8 nuclease PIN compare
PS417_04380 -2.5 -1.6 ABC transporter permease compare
PS417_23915 -2.4 -4.5 pantoate--beta-alanine ligase compare
PS417_01580 -2.1 -2.4 imidazole glycerol phosphate synthase compare
PS417_23380 -2.1 -2.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_08125 -2.0 -0.7 prephenate dehydratase compare
PS417_02255 -1.5 -3.9 lipopolysaccharide kinase compare
PS417_08090 -1.5 -1.1 3-oxoacyl-ACP reductase compare
PS417_06540 -1.5 -1.9 membrane protein compare
PS417_28070 -1.5 -7.3 phosphate ABC transporter ATP-binding protein compare
PS417_24600 -1.4 -3.8 hydrogenase compare
PS417_08155 -1.4 -1.3 integration host factor subunit beta compare
PS417_22520 -1.4 -1.6 histidine kinase compare
PS417_27195 -1.4 -1.4 N-acetylglutamate synthase compare
PS417_02555 -1.4 -8.2 exoribonuclease R compare
PS417_05815 -1.4 -3.0 recombinase RecA compare
PS417_08620 -1.4 -1.3 hypothetical protein compare
PS417_22840 -1.4 -1.9 tRNA-Met compare
PS417_21655 -1.4 -1.6 aspartate kinase compare
PS417_21630 -1.4 -2.0 magnesium transporter compare
PS417_08540 -1.3 -2.4 RNA helicase compare
PS417_00660 -1.3 -3.1 DSBA oxidoreductase compare
PS417_23375 -1.3 -1.9 cytochrome C oxidase compare
PS417_26775 -1.3 -6.3 thiazole synthase compare
PS417_02280 -1.3 -1.6 GlcNAc-PI de-N-acetylase compare
PS417_14065 -1.3 -4.5 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_24605 -1.2 -3.6 thiamine-phosphate pyrophosphorylase compare
PS417_26420 -1.2 -2.2 hypothetical protein compare
PS417_10645 -1.2 -3.6 magnesium ABC transporter ATPase compare
PS417_00510 -1.2 -1.6 membrane protein compare
PS417_15975 -1.2 -2.5 glutamate carboxypeptidase compare
PS417_26270 -1.2 -1.7 AraC family transcriptional regulator compare
PS417_21430 -1.2 -1.4 3-oxoacyl-ACP synthase compare
PS417_23950 -1.2 -1.3 polynucleotide phosphorylase/polyadenylase compare
PS417_23995 -1.2 -1.0 preprotein translocase subunit SecG compare
PS417_23810 -1.1 -6.0 acetolactate synthase 3 catalytic subunit compare
PS417_25175 -1.1 -2.5 hypothetical protein compare
PS417_12595 -1.0 -2.2 transcriptional regulator compare
PS417_09865 -1.0 -2.2 hypothetical protein compare
PS417_23135 -1.0 -2.0 GTP-binding protein compare
PS417_05575 -1.0 -6.1 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_18250 -1.0 -2.0 chemotaxis protein compare
PS417_05160 -1.0 -1.0 DNA polymerase III subunit chi compare
PS417_06500 -1.0 -1.3 hypothetical protein compare
PS417_02980 -1.0 -1.2 chemotaxis protein compare
PS417_10675 -1.0 -1.2 TetR family transcriptional regulator compare
PS417_27075 -1.0 -2.8 thiol-disulfide isomerase compare
PS417_09210 -1.0 -1.9 TetR family transcriptional regulator compare
PS417_07640 -1.0 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_28080 -1.0 -7.1 phosphate ABC transporter permease compare
PS417_21870 -1.0 -2.7 glycerophosphodiester phosphodiesterase compare
PS417_19415 -1.0 -2.7 allantoinase compare
PS417_09085 -1.0 -1.5 hypothetical protein compare
PS417_02485 -1.0 -1.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_00755 -0.9 -0.8 biofilm PGA synthesis protein PgaD compare
PS417_24895 -0.9 -1.1 hypothetical protein compare
PS417_21360 -0.9 -1.1 termination factor Rho compare
PS417_24745 -0.9 -1.8 gamma-glutamyl phosphate reductase compare
PS417_18310 -0.9 -0.8 hypothetical protein compare
PS417_03380 -0.9 -1.2 hypothetical protein compare
PS417_11925 -0.9 -2.4 hypothetical protein compare
PS417_16855 -0.9 -1.6 cation:proton antiporter compare
PS417_16510 -0.9 -2.5 Clp protease ClpX compare
PS417_13510 -0.9 -1.0 polyketide cyclase compare
PS417_24710 -0.9 -4.3 lipoprotein compare
PS417_28230 -0.9 -1.9 transcriptional regulator compare
PS417_22620 -0.8 -3.0 pyruvate kinase compare
PS417_27610 -0.8 -2.5 hypothetical protein compare
PS417_06945 -0.8 -1.1 membrane protein compare
PS417_04385 -0.8 -1.4 organic solvent ABC transporter substrate-binding protein compare
PS417_26990 -0.8 -0.7 RNA pyrophosphohydrolase compare
PS417_19350 -0.8 -3.0 GTP cyclohydrolase compare
PS417_03915 -0.8 -1.4 tRNA-Thr compare
PS417_27795 -0.8 -0.5 orotate phosphoribosyltransferase compare
PS417_18040 -0.8 -1.5 general secretion pathway protein GspN compare
PS417_16515 -0.8 -2.5 Clp protease ClpS compare
PS417_02865 -0.8 -2.5 peptidase compare
PS417_23475 -0.8 -1.2 hypothetical protein compare
PS417_04650 -0.8 -0.4 D-alanine--D-alanine ligase compare
PS417_12695 -0.8 -2.9 mannitol dehydrogenase compare
PS417_02805 -0.8 -1.2 urease subunit gamma compare
PS417_22450 -0.7 -0.8 ATP-dependent DNA helicase RuvA compare
PS417_20610 -0.7 -1.3 hypothetical protein compare
PS417_06200 -0.7 -2.7 protein-PII uridylyltransferase compare
PS417_13100 -0.7 -2.7 ABC transporter ATP-binding protein compare
PS417_05865 -0.7 -0.9 hypothetical protein compare
PS417_02880 -0.7 -1.0 copper chaperone compare
PS417_11075 -0.7 -1.9 hydroxypyruvate isomerase compare
PS417_23385 -0.7 -4.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_02270 -0.7 -1.5 carbamoyltransferase compare
PS417_20985 -0.7 -0.5 porin compare
PS417_04170 -0.7 -2.6 stringent starvation protein A compare
PS417_01590 -0.7 -1.5 polysaccharide deacetylase compare
PS417_18105 -0.7 -1.3 iron-dicitrate transporter substrate-binding subunit compare
PS417_00825 -0.7 -1.0 recombinase RecF compare
PS417_26580 -0.7 -2.7 malonate transporter compare
PS417_00345 -0.7 -1.4 copper-binding protein compare
PS417_19095 -0.7 -1.4 hypothetical protein compare
PS417_24675 -0.7 -1.4 lipoyl synthase compare
PS417_27425 -0.7 -3.1 exopolyphosphatase compare
PS417_20130 -0.7 -4.0 dehydrogenase compare
PS417_28075 -0.7 -2.8 phosphate ABC transporter permease compare
PS417_05200 -0.7 -2.5 DNA recombination protein RecO compare
PS417_22205 -0.7 -3.7 potassium transporter TrkH compare
PS417_25320 -0.7 -4.0 dTDP-4-dehydrorhamnose reductase compare
PS417_05650 -0.7 -1.5 leucyl-tRNA synthetase compare
PS417_20030 -0.6 -2.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_12280 -0.6 -1.2 MerR family transcriptional regulator compare
PS417_23615 -0.6 -1.2 sulfate transporter compare
PS417_14655 -0.6 -1.0 lysine transporter LysE compare
PS417_10400 -0.6 -2.3 membrane protein compare
PS417_16400 -0.6 -1.4 NAD(P)H-quinone oxidoreductase compare
PS417_17840 -0.6 -1.1 betaine-aldehyde dehydrogenase compare
PS417_05140 -0.6 -1.4 dipicolinate synthase compare
PS417_14605 -0.6 -2.4 adenylate kinase compare
PS417_20720 -0.6 -1.8 cbb3-type cytochrome c oxidase subunit I compare
PS417_18395 -0.6 -1.9 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_06775 -0.6 -3.5 antibiotic transporter compare
PS417_17330 -0.6 -2.4 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PS417_24345 -0.6 -1.8 ubiquinol oxidase subunit II compare
PS417_24030 -0.6 -1.1 MFS transporter compare
PS417_05500 -0.6 -1.8 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_14185 -0.6 -2.0 transcriptional regulator compare
PS417_09730 -0.6 -2.2 adenylylsulfate kinase compare
PS417_03260 -0.6 -0.7 5S ribosomal RNA compare
PS417_23490 -0.6 -0.8 dihydrofolate reductase compare
PS417_18780 -0.6 -1.3 flavin reductase compare
PS417_07710 -0.6 -1.6 membrane protein compare
PS417_26470 -0.6 -1.0 cytochrome C compare
PS417_21090 -0.6 -1.7 hypothetical protein compare
PS417_09160 -0.6 -1.2 GNAT family acetyltransferase compare
PS417_18885 -0.6 -0.9 GntR family transcriptional regulator compare
PS417_11615 -0.6 -1.2 urea ABC transporter ATP-binding protein compare
PS417_08545 -0.6 -0.8 aromatic ring-opening dioxygenase LigB compare
PS417_10185 -0.6 -1.5 hypothetical protein compare
PS417_00650 -0.6 -0.7 LysR family transcriptional regulator compare
PS417_16080 -0.6 -1.1 AraC family transcriptional regulator compare
PS417_15100 -0.6 -1.1 BatB protein compare
PS417_08925 -0.6 -2.3 membrane protein compare
PS417_02700 -0.6 -1.4 urease accessory protein UreG compare
PS417_27705 -0.6 -1.1 amino acid dehydrogenase compare
PS417_06895 -0.6 -1.1 DNA-binding protein compare
PS417_18260 -0.6 -1.6 TetR family transcriptional regulator compare
PS417_05040 -0.6 -1.6 amino acid dehydrogenase compare
PS417_04535 -0.6 -2.4 lysine transporter LysE compare
PS417_10985 -0.6 -0.8 NADH:flavin oxidoreductase compare
PS417_23805 -0.6 -1.5 acetolactate synthase 3 regulatory subunit compare
PS417_02455 -0.6 -1.9 putative transporter, required for glycine utilization (from data) compare
PS417_23105 -0.6 -1.0 hypothetical protein compare
PS417_11275 -0.6 -0.9 general secretion pathway protein GspG compare
PS417_25720 -0.6 -2.6 anthranilate synthase component II compare
PS417_19660 -0.6 -3.7 cobalamin biosynthesis protein CobQ compare
PS417_03000 -0.6 -1.3 translation initiation factor Sui1 compare
PS417_06075 -0.6 -0.9 hypothetical protein compare
PS417_17155 -0.6 -1.4 cytochrome B561 compare
PS417_02975 -0.5 -1.8 3-dehydroquinate dehydratase compare
PS417_12840 -0.5 -2.0 TetR family transcriptional regulator compare
PS417_06980 -0.5 -2.3 membrane protein compare
PS417_14245 -0.5 -1.2 hypothetical protein compare
PS417_01430 -0.5 -1.5 chromosome segregation protein SMC compare
PS417_08030 -0.5 -2.3 transcriptional regulator compare
PS417_23390 -0.5 -2.3 ubiquinol oxidase subunit II compare
PS417_27590 -0.5 -3.5 hypothetical protein compare
PS417_16275 -0.5 -1.2 hypothetical protein compare
PS417_27605 -0.5 -2.4 hypothetical protein compare
PS417_08220 -0.5 -0.6 epimerase compare
PS417_08785 -0.5 -1.7 urea transporter compare
PS417_17780 -0.5 -0.8 Ais protein compare
PS417_11825 -0.5 -1.4 transcriptional regulator compare
PS417_14140 -0.5 -1.0 membrane protein compare
PS417_23510 -0.5 -0.9 HopJ type III effector protein compare
PS417_13205 -0.5 -1.0 isochorismate-pyruvate lyase compare
PS417_10490 -0.5 -1.6 delta-aminolevulinic acid dehydratase compare
PS417_15540 -0.5 -0.9 NUDIX hydrolase compare
PS417_15325 -0.5 -0.9 type VI secretion protein compare
PS417_17860 -0.5 -1.4 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
PS417_05130 -0.5 -1.8 glutaredoxin compare
PS417_04390 -0.5 -1.7 toluene tolerance protein compare
PS417_00590 -0.5 -1.3 5S ribosomal RNA compare
PS417_10810 -0.5 -1.2 hypothetical protein compare
PS417_11415 -0.5 -1.4 hypothetical protein compare
PS417_23910 -0.5 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_15520 -0.5 -0.8 hypothetical protein compare
PS417_07000 -0.5 -1.9 hypothetical protein compare
PS417_10025 -0.5 -1.0 bacteriophage lambda NinG family protein compare
PS417_09830 -0.5 -2.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_08045 -0.5 -1.4 uracil permease compare
PS417_13730 -0.5 -1.5 hypothetical protein compare
PS417_19835 -0.5 -0.9 flagellar biosynthesis protein FliS compare
PS417_01575 -0.5 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18150 -0.5 -2.0 chemotaxis protein CheY compare
PS417_22990 -0.5 -0.9 iron dicitrate transport regulator FecR compare
PS417_05695 -0.5 -1.5 transcriptional regulator compare
PS417_13775 -0.5 -2.4 dehydrogenase compare
PS417_23900 -0.5 -2.8 poly(A) polymerase compare
PS417_05820 -0.5 -1.0 recombinase RecX compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress Fraxetin across organisms