Experiment set32S499 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 2 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_23950 -4.6 -3.1 polynucleotide phosphorylase/polyadenylase compare
PS417_21480 -4.3 -2.9 23S rRNA pseudouridylate synthase compare
PS417_23915 -3.5 -4.9 pantoate--beta-alanine ligase compare
PS417_27795 -3.2 -1.3 orotate phosphoribosyltransferase compare
PS417_01605 -2.8 -1.9 phosphoglycerate mutase compare
PS417_01915 -2.7 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_21430 -2.3 -2.2 3-oxoacyl-ACP synthase compare
PS417_03560 -2.3 -2.2 GTP-binding protein compare
PS417_01855 -2.3 -4.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_22450 -2.2 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_16490 -2.2 -1.7 cell division protein FtsK compare
PS417_19350 -2.1 -5.5 GTP cyclohydrolase compare
PS417_26730 -2.1 -1.2 pyrroline-5-carboxylate reductase compare
PS417_02280 -2.1 -1.7 GlcNAc-PI de-N-acetylase compare
PS417_28050 -2.0 -1.3 hypothetical protein compare
PS417_27245 -2.0 -2.3 aminotransferase DegT compare
PS417_24600 -1.9 -5.3 hydrogenase compare
PS417_06375 -1.8 -0.7 deoxycytidine triphosphate deaminase compare
PS417_26775 -1.8 -10.2 thiazole synthase compare
PS417_22565 -1.8 -0.7 formyltetrahydrofolate deformylase compare
PS417_06680 -1.8 -5.0 nuclease PIN compare
PS417_02880 -1.8 -2.0 copper chaperone compare
PS417_10645 -1.7 -5.2 magnesium ABC transporter ATPase compare
PS417_04365 -1.5 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21655 -1.5 -1.6 aspartate kinase compare
PS417_27870 -1.5 -2.6 ATP-dependent DNA helicase RecG compare
PS417_24605 -1.4 -2.9 thiamine-phosphate pyrophosphorylase compare
PS417_03300 -1.4 -2.6 alanine acetyltransferase compare
PS417_17215 -1.4 -2.3 peptidylprolyl isomerase compare
PS417_18545 -1.4 -2.5 cell division protein compare
PS417_27195 -1.3 -1.6 N-acetylglutamate synthase compare
PS417_09590 -1.3 -4.2 membrane protein compare
PS417_02255 -1.3 -3.7 lipopolysaccharide kinase compare
PS417_05975 -1.3 -0.9 chemotaxis protein CheW compare
PS417_00920 -1.2 -3.5 diguanylate cyclase compare
PS417_05535 -1.2 -1.8 Fis family transcriptional regulator compare
PS417_02555 -1.2 -7.1 exoribonuclease R compare
PS417_04380 -1.2 -1.0 ABC transporter permease compare
PS417_07615 -1.2 -3.9 TetR family transcriptional regulator compare
PS417_22570 -1.2 -0.9 H-NS histone compare
PS417_24710 -1.2 -6.9 lipoprotein compare
PS417_24745 -1.1 -2.0 gamma-glutamyl phosphate reductase compare
PS417_07695 -1.1 -3.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_11400 -1.1 -1.9 phosphoglycerate mutase compare
PS417_02485 -1.1 -2.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_22530 -1.1 -4.2 hypothetical protein compare
PS417_08170 -1.1 -5.8 capsular biosynthesis protein compare
PS417_02270 -1.1 -3.0 carbamoyltransferase compare
PS417_27835 -1.1 -4.5 endoribonuclease compare
PS417_01575 -1.1 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_08685 -1.1 -1.4 flagellar hook-length control protein FliK compare
PS417_10245 -1.1 -2.1 hypothetical protein compare
PS417_21425 -1.0 -2.1 4-amino-4-deoxychorismate lyase compare
PS417_08335 -1.0 -1.9 hypothetical protein compare
PS417_05595 -1.0 -5.6 ornithine carbamoyltransferase compare
PS417_04305 -1.0 -1.6 aspartate ammonia-lyase compare
PS417_21625 -1.0 -1.0 DNA-binding protein compare
PS417_19995 -1.0 -6.0 Long-chain fatty acid transport protein compare
PS417_23910 -1.0 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_21630 -1.0 -1.6 magnesium transporter compare
PS417_03100 -1.0 -1.0 pilus assembly protein compare
PS417_09210 -1.0 -1.2 TetR family transcriptional regulator compare
PS417_23385 -1.0 -4.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_27865 -0.9 -1.4 LysR family transcriptional regulator compare
PS417_05985 -0.9 -1.6 chemotaxis protein CheY compare
PS417_06675 -0.9 -1.9 ATP-dependent helicase compare
PS417_07875 -0.9 -1.0 hypothetical protein compare
PS417_07575 -0.9 -3.0 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_09630 -0.9 -4.2 glycosyl transferase compare
PS417_15465 -0.9 -2.1 carboxynorspermidine decarboxylase compare
PS417_09635 -0.9 -5.6 mannose-1-phosphate guanylyltransferase compare
PS417_01565 -0.9 -2.9 imidazole glycerol phosphate synthase compare
PS417_18570 -0.8 -3.2 peptidoglycan-binding protein compare
PS417_21105 -0.8 -5.0 aminodeoxychorismate synthase compare
PS417_17795 -0.8 -1.6 ABC transporter permease compare
PS417_08410 -0.8 -1.4 hypothetical protein compare
PS417_23390 -0.8 -3.4 ubiquinol oxidase subunit II compare
PS417_27605 -0.8 -3.8 hypothetical protein compare
PS417_17945 -0.8 -0.8 hypothetical protein compare
PS417_27785 -0.8 -3.3 phosphoglucomutase compare
PS417_19415 -0.8 -2.0 allantoinase compare
PS417_17840 -0.8 -1.5 betaine-aldehyde dehydrogenase compare
PS417_22690 -0.8 -1.9 phosphogluconate dehydratase compare
PS417_09420 -0.8 -1.8 LysR family transcriptional regulator compare
PS417_27135 -0.8 -0.6 glutamine synthetase compare
PS417_23475 -0.8 -1.2 hypothetical protein compare
PS417_04180 -0.8 -1.7 GntR family transcriptional regulator compare
PS417_19620 -0.8 -1.6 hypothetical protein compare
PS417_04390 -0.8 -2.1 toluene tolerance protein compare
PS417_02865 -0.8 -2.7 peptidase compare
PS417_27705 -0.8 -1.4 amino acid dehydrogenase compare
PS417_00385 -0.7 -1.0 Fur family transcriptional regulator compare
PS417_15100 -0.7 -1.1 BatB protein compare
PS417_05165 -0.7 -1.0 cytosol aminopeptidase compare
PS417_07710 -0.7 -1.7 membrane protein compare
PS417_05325 -0.7 -1.2 fimbrial protein compare
PS417_24560 -0.7 -1.5 ferrous iron transporter compare
PS417_02800 -0.7 -1.5 acetyltransferase compare
PS417_06770 -0.7 -2.8 multidrug transporter compare
PS417_02845 -0.7 -2.2 ABC transporter permease compare
PS417_00080 -0.7 -4.1 potassium transporter peripheral membrane component compare
PS417_05820 -0.7 -1.5 recombinase RecX compare
PS417_04170 -0.7 -2.0 stringent starvation protein A compare
PS417_08130 -0.7 -1.1 aspartate aminotransferase compare
PS417_15890 -0.7 -1.0 RNA polymerase sigma factor compare
PS417_03465 -0.7 -1.1 type III secretion protein compare
PS417_09640 -0.7 -3.6 capsular biosynthesis protein compare
PS417_24115 -0.7 -1.4 hypothetical protein compare
PS417_27940 -0.7 -1.1 type VI secretion protein compare
PS417_10025 -0.7 -1.2 bacteriophage lambda NinG family protein compare
PS417_22575 -0.7 -3.7 exonuclease I compare
PS417_18355 -0.7 -3.8 DNA-binding protein compare
PS417_09625 -0.7 -2.4 sugar ABC transporter substrate-binding protein compare
PS417_08135 -0.7 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26275 -0.7 -1.5 glycine/betaine ABC transporter substrate-binding protein compare
PS417_10455 -0.7 -1.6 membrane protein compare
PS417_21090 -0.7 -2.4 hypothetical protein compare
PS417_28510 -0.7 -3.7 chromosome partitioning protein compare
PS417_26335 -0.7 -1.6 BetI family transcriptional regulator compare
PS417_00220 -0.7 -1.4 hypothetical protein compare
PS417_16555 -0.7 -1.0 cupin compare
PS417_03260 -0.6 -0.7 5S ribosomal RNA compare
PS417_26240 -0.6 -1.8 N-methylproline demethylase compare
PS417_22620 -0.6 -1.8 pyruvate kinase compare
PS417_16475 -0.6 -2.5 camphor resistance protein CrcB compare
PS417_08540 -0.6 -1.4 RNA helicase compare
PS417_22700 -0.6 -1.9 RNA polymerase subunit sigma-24 compare
PS417_23375 -0.6 -1.0 cytochrome C oxidase compare
PS417_18310 -0.6 -0.6 hypothetical protein compare
PS417_03995 -0.6 -2.6 Fe(II)-dependent oxygenase compare
PS417_06150 -0.6 -1.1 SAM-dependent methlyltransferase compare
PS417_24705 -0.6 -1.5 D-alanyl-D-alanine carboxypeptidase compare
PS417_05695 -0.6 -1.9 transcriptional regulator compare
PS417_19480 -0.6 -2.6 aminopeptidase compare
PS417_22895 -0.6 -3.3 tyrosine recombinase XerD compare
PS417_10720 -0.6 -4.2 chemotaxis protein CheY compare
PS417_02575 -0.6 -1.8 membrane protein compare
PS417_18885 -0.6 -1.1 GntR family transcriptional regulator compare
PS417_04865 -0.6 -0.8 molybdenum cofactor biosynthesis protein MoaC compare
PS417_02705 -0.6 -1.5 urease accessory protein UreF compare
PS417_04420 -0.6 -3.2 histidinol dehydrogenase compare
PS417_13425 -0.6 -1.8 cupin compare
PS417_19675 -0.6 -2.0 chemotaxis protein CheY compare
PS417_13855 -0.6 -0.9 acetyl-CoA acetyltransferase compare
PS417_16845 -0.6 -1.2 monovalent cation/H+ antiporter subunit E compare
PS417_09615 -0.6 -2.4 glycosyl transferase family 1 compare
PS417_27075 -0.6 -1.6 thiol-disulfide isomerase compare
PS417_02475 -0.6 -1.6 N-acetylmuramoyl-L-alanine amidase compare
PS417_04050 -0.6 -1.3 peptide ABC transporter ATP-binding protein compare
PS417_18495 -0.6 -1.0 hypothetical protein compare
PS417_08580 -0.6 -2.6 histidine kinase compare
PS417_12355 -0.6 -1.4 magnesium chelatase compare
PS417_00195 -0.6 -0.9 hypothetical protein compare
PS417_06365 -0.6 -3.6 RNA polymerase sigma factor compare
PS417_23545 -0.6 -0.7 gamma-glutamyl kinase compare
PS417_12805 -0.6 -4.5 glycogen branching protein compare
PS417_27425 -0.6 -2.8 exopolyphosphatase compare
PS417_16370 -0.6 -4.4 chemotaxis protein CheY compare
PS417_22205 -0.6 -3.2 potassium transporter TrkH compare
PS417_16885 -0.6 -1.8 hypothetical protein compare
PS417_27290 -0.5 -1.3 hypothetical protein compare
PS417_24430 -0.5 -1.0 3-dehydroquinate dehydratase compare
PS417_15115 -0.5 -1.7 exonuclease SbcD compare
PS417_01430 -0.5 -1.3 chromosome segregation protein SMC compare
PS417_20700 -0.5 -3.0 cbb3-type cytochrome c oxidase subunit I compare
PS417_15975 -0.5 -1.4 glutamate carboxypeptidase compare
PS417_23825 -0.5 -2.7 penicillin-binding protein compare
PS417_19090 -0.5 -1.7 hypothetical protein compare
PS417_00475 -0.5 -2.7 membrane protein compare
PS417_05045 -0.5 -1.4 acetamidase compare
PS417_12595 -0.5 -1.3 transcriptional regulator compare
PS417_03335 -0.5 -2.3 MFS transporter compare
PS417_10575 -0.5 -1.4 DNA alkylation repair protein compare
PS417_27360 -0.5 -2.3 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_04340 -0.5 -2.0 ribosome hibernation promoting factor HPF compare
PS417_26850 -0.5 -0.6 twin-arginine translocation pathway signal protein compare
PS417_18070 -0.5 -0.7 general secretion pathway protein GspH compare
PS417_25320 -0.5 -3.1 dTDP-4-dehydrorhamnose reductase compare
PS417_02355 -0.5 -3.3 thiamine biosynthesis protein ThiC compare
PS417_24235 -0.5 -1.4 hypothetical protein compare
PS417_09865 -0.5 -1.2 hypothetical protein compare
PS417_02395 -0.5 -1.8 DNA topoisomerase IV subunit B compare
PS417_23820 -0.5 -2.1 hypothetical protein compare
PS417_25720 -0.5 -2.7 anthranilate synthase component II compare
PS417_07305 -0.5 -1.3 3-beta hydroxysteroid dehydrogenase compare
PS417_21015 -0.5 -1.4 EstX protein compare
PS417_06780 -0.5 -1.3 TetR family transcriptional regulator compare
PS417_12845 -0.5 -1.4 NAD(P)H dehydrogenase compare
PS417_26805 -0.5 -0.7 cell division protein FtsE compare
PS417_05445 -0.5 -0.9 DNA mismatch repair protein MutT compare
PS417_08220 -0.5 -0.6 epimerase compare
PS417_24570 -0.5 -2.1 AsnC family transcriptional regulator compare
PS417_02365 -0.5 -1.8 hypothetical protein compare
PS417_27210 -0.5 -2.1 AsnC family transcriptional regulator compare
PS417_08360 -0.5 -1.5 DoxX family protein compare
PS417_16510 -0.5 -1.6 Clp protease ClpX compare
PS417_05575 -0.5 -3.3 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_06245 -0.5 -0.7 zinc metallopeptidase RseP compare
PS417_01435 -0.5 -0.9 hypothetical protein compare
PS417_18040 -0.5 -1.0 general secretion pathway protein GspN compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress Scopoletin across organisms