Experiment set32S498 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 1 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -4.4 -6.0 pantoate--beta-alanine ligase compare
PS417_22450 -3.7 -2.5 ATP-dependent DNA helicase RuvA compare
PS417_04365 -2.6 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_16490 -2.4 -2.0 cell division protein FtsK compare
PS417_11400 -2.1 -2.5 phosphoglycerate mutase compare
PS417_08125 -2.0 -0.8 prephenate dehydratase compare
PS417_06375 -2.0 -0.8 deoxycytidine triphosphate deaminase compare
PS417_22565 -2.0 -0.8 formyltetrahydrofolate deformylase compare
PS417_21480 -1.9 -1.8 23S rRNA pseudouridylate synthase compare
PS417_27195 -1.8 -1.9 N-acetylglutamate synthase compare
PS417_28050 -1.8 -1.5 hypothetical protein compare
PS417_26775 -1.8 -9.8 thiazole synthase compare
PS417_24600 -1.7 -6.6 hydrogenase compare
PS417_06680 -1.5 -4.8 nuclease PIN compare
PS417_04380 -1.4 -1.2 ABC transporter permease compare
PS417_01560 -1.3 -2.3 imidazoleglycerol-phosphate dehydratase compare
PS417_26990 -1.3 -1.0 RNA pyrophosphohydrolase compare
PS417_10985 -1.3 -1.5 NADH:flavin oxidoreductase compare
PS417_10645 -1.2 -3.5 magnesium ABC transporter ATPase compare
PS417_08540 -1.2 -2.4 RNA helicase compare
PS417_07875 -1.2 -1.3 hypothetical protein compare
PS417_27870 -1.1 -2.1 ATP-dependent DNA helicase RecG compare
PS417_03560 -1.1 -1.5 GTP-binding protein compare
PS417_01605 -1.1 -1.2 phosphoglycerate mutase compare
PS417_02255 -1.1 -3.5 lipopolysaccharide kinase compare
PS417_22530 -1.1 -4.7 hypothetical protein compare
PS417_24605 -1.1 -2.3 thiamine-phosphate pyrophosphorylase compare
PS417_19350 -1.1 -3.9 GTP cyclohydrolase compare
PS417_04390 -1.0 -2.8 toluene tolerance protein compare
PS417_27300 -1.0 -0.9 cell division protein ZapA compare
PS417_24710 -1.0 -6.5 lipoprotein compare
PS417_13620 -1.0 -2.2 thermostable hemolysin compare
PS417_21425 -1.0 -2.3 4-amino-4-deoxychorismate lyase compare
PS417_04385 -1.0 -1.6 organic solvent ABC transporter substrate-binding protein compare
PS417_16510 -1.0 -4.0 Clp protease ClpX compare
PS417_05975 -1.0 -0.8 chemotaxis protein CheW compare
PS417_06370 -1.0 -1.9 cold-shock protein compare
PS417_03525 -1.0 -1.3 hypothetical protein compare
PS417_21630 -1.0 -1.8 magnesium transporter compare
PS417_22445 -0.9 -1.9 ATP-dependent DNA helicase RuvB compare
PS417_26730 -0.9 -0.6 pyrroline-5-carboxylate reductase compare
PS417_19665 -0.9 -3.1 flagellar motor protein MotD compare
PS417_19675 -0.9 -3.7 chemotaxis protein CheY compare
PS417_02555 -0.9 -5.5 exoribonuclease R compare
PS417_01915 -0.9 -0.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_17795 -0.9 -2.1 ABC transporter permease compare
PS417_24675 -0.9 -1.4 lipoyl synthase compare
PS417_19955 -0.9 -1.7 hypothetical protein compare
PS417_19605 -0.8 -1.3 hypothetical protein compare
PS417_07710 -0.8 -2.1 membrane protein compare
PS417_03260 -0.8 -1.0 5S ribosomal RNA compare
PS417_06500 -0.8 -1.0 hypothetical protein compare
PS417_17840 -0.8 -2.7 betaine-aldehyde dehydrogenase compare
PS417_16560 -0.8 -1.8 GNAT family acetyltransferase compare
PS417_11965 -0.8 -2.2 GCN5 family acetyltransferase compare
PS417_05695 -0.8 -2.9 transcriptional regulator compare
PS417_04170 -0.8 -3.0 stringent starvation protein A compare
PS417_01565 -0.8 -4.0 imidazole glycerol phosphate synthase compare
PS417_16065 -0.8 -1.0 3-phytase compare
PS417_02280 -0.8 -0.8 GlcNAc-PI de-N-acetylase compare
PS417_07820 -0.8 -2.1 transposase compare
PS417_07615 -0.8 -2.8 TetR family transcriptional regulator compare
PS417_02485 -0.8 -1.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_12355 -0.8 -1.7 magnesium chelatase compare
PS417_02805 -0.8 -1.7 urease subunit gamma compare
PS417_27605 -0.8 -4.5 hypothetical protein compare
PS417_27835 -0.7 -3.5 endoribonuclease compare
PS417_07940 -0.7 -2.3 hypothetical protein compare
PS417_23910 -0.7 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_20985 -0.7 -0.5 porin compare
PS417_23105 -0.7 -1.2 hypothetical protein compare
PS417_04650 -0.7 -0.4 D-alanine--D-alanine ligase compare
PS417_07410 -0.7 -1.3 hypothetical protein compare
PS417_00085 -0.7 -1.5 16S rRNA methyltransferase compare
PS417_05025 -0.7 -1.4 maleylacetoacetate isomerase compare
PS417_07575 -0.7 -2.0 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_06355 -0.7 -2.2 protein-L-isoaspartate O-methyltransferase compare
PS417_02270 -0.7 -1.4 carbamoyltransferase compare
PS417_01855 -0.7 -2.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_15235 -0.7 -2.6 short-chain dehydrogenase compare
PS417_13425 -0.7 -0.7 cupin compare
PS417_08590 -0.7 -1.4 hypothetical protein compare
PS417_17755 -0.7 -1.9 hypothetical protein compare
PS417_13140 -0.7 -1.4 oxidoreductase compare
PS417_22375 -0.7 -0.8 cold-shock protein compare
PS417_23385 -0.7 -3.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_15200 -0.6 -1.2 protein activator of alkane oxidation PraB compare
PS417_05830 -0.6 -1.9 hypothetical protein compare
PS417_23545 -0.6 -1.4 gamma-glutamyl kinase compare
PS417_20775 -0.6 -1.5 coproporphyrinogen III oxidase compare
PS417_27425 -0.6 -2.7 exopolyphosphatase compare
PS417_27245 -0.6 -1.3 aminotransferase DegT compare
PS417_26145 -0.6 -1.5 hypothetical protein compare
PS417_08990 -0.6 -2.5 ABC transporter substrate-binding protein compare
PS417_22935 -0.6 -2.3 hypothetical protein compare
PS417_08410 -0.6 -1.5 hypothetical protein compare
PS417_23615 -0.6 -1.8 sulfate transporter compare
PS417_23805 -0.6 -1.8 acetolactate synthase 3 regulatory subunit compare
PS417_03785 -0.6 -1.0 pilus assembly protein PilV compare
PS417_26815 -0.6 -1.4 peptidase M16 compare
PS417_00920 -0.6 -2.5 diguanylate cyclase compare
PS417_15135 -0.6 -1.0 hypothetical protein compare
PS417_22065 -0.6 -3.4 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_17930 -0.6 -2.0 aldehyde dehydrogenase compare
PS417_02070 -0.6 -0.8 membrane protein compare
PS417_01850 -0.6 -1.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23390 -0.6 -3.2 ubiquinol oxidase subunit II compare
PS417_28230 -0.6 -1.8 transcriptional regulator compare
PS417_16275 -0.6 -1.8 hypothetical protein compare
PS417_07695 -0.6 -2.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_13490 -0.6 -1.5 hypothetical protein compare
PS417_23500 -0.6 -1.1 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
PS417_19415 -0.6 -1.2 allantoinase compare
PS417_22610 -0.5 -1.7 pilus assembly protein PilZ compare
PS417_07170 -0.5 -2.4 hypothetical protein compare
PS417_05445 -0.5 -1.0 DNA mismatch repair protein MutT compare
PS417_10010 -0.5 -1.5 Replication protein P compare
PS417_05235 -0.5 -0.8 peptidase inhibitor I42 compare
PS417_24085 -0.5 -1.2 protein RnfH compare
PS417_09200 -0.5 -2.3 ABC transporter compare
PS417_25710 -0.5 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_02615 -0.5 -2.5 transglutaminase compare
PS417_03460 -0.5 -2.7 type III secretion protein HrpI compare
PS417_20365 -0.5 -1.9 Cro/Cl family transcriptional regulator compare
PS417_00345 -0.5 -1.2 copper-binding protein compare
PS417_01945 -0.5 -1.5 nuclease compare
PS417_17680 -0.5 -2.0 ABC transporter compare
PS417_01875 -0.5 -1.6 polyhydroxyalkanoic acid system protein compare
PS417_01195 -0.5 -1.5 RNA-binding protein S4 compare
PS417_06145 -0.5 -0.8 hypothetical protein compare
PS417_01955 -0.5 -3.6 peptidase compare
PS417_00045 -0.5 -1.0 glycerol acyltransferase compare
PS417_06200 -0.5 -2.2 protein-PII uridylyltransferase compare
PS417_24345 -0.5 -1.3 ubiquinol oxidase subunit II compare
PS417_11925 -0.5 -1.5 hypothetical protein compare
PS417_06845 -0.5 -1.1 lipoprotein compare
PS417_12260 -0.5 -1.3 hypothetical protein compare
PS417_03995 -0.5 -2.2 Fe(II)-dependent oxygenase compare
PS417_13445 -0.5 -1.2 D-aminopeptidase compare
PS417_08685 -0.5 -0.7 flagellar hook-length control protein FliK compare
PS417_01920 -0.5 -0.6 ATP-dependent protease subunit HslV compare
PS417_17240 -0.5 -1.2 trigger factor compare
PS417_23810 -0.5 -3.0 acetolactate synthase 3 catalytic subunit compare
PS417_14925 -0.5 -1.3 2-methylcitrate dehydratase compare
PS417_02895 -0.5 -1.3 precorrin-6Y C5,15-methyltransferase compare
PS417_08545 -0.5 -1.1 aromatic ring-opening dioxygenase LigB compare
PS417_26335 -0.5 -1.5 BetI family transcriptional regulator compare
PS417_10025 -0.5 -1.1 bacteriophage lambda NinG family protein compare
PS417_22570 -0.5 -0.5 H-NS histone compare
PS417_05635 -0.5 -2.8 membrane protein compare
PS417_24570 -0.5 -1.8 AsnC family transcriptional regulator compare
PS417_28515 -0.5 -1.5 16S rRNA methyltransferase compare
PS417_13180 -0.5 -1.6 AraC family transcriptional regulator compare
PS417_22575 -0.5 -3.2 exonuclease I compare
PS417_25715 -0.5 -1.6 anthranilate phosphoribosyltransferase compare
PS417_13510 -0.5 -0.7 polyketide cyclase compare
PS417_23900 -0.5 -2.7 poly(A) polymerase compare
PS417_21360 -0.5 -0.7 termination factor Rho compare
PS417_17645 -0.5 -0.7 RND transporter compare
PS417_12015 -0.5 -1.6 phosphoglycerate mutase compare
PS417_12280 -0.5 -1.3 MerR family transcriptional regulator compare
PS417_20130 -0.5 -2.9 dehydrogenase compare
PS417_17160 -0.5 -0.7 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_05210 -0.5 -2.3 copper oxidase compare
PS417_11725 -0.5 -1.2 peptidase M19 compare
PS417_26655 -0.5 -2.0 chemotaxis protein compare
PS417_17925 -0.5 -0.9 acyl-CoA dehydrogenase compare
PS417_16950 -0.5 -1.7 fimbrial protein compare
PS417_22680 -0.5 -2.0 chemotaxis protein CheY compare
PS417_02740 -0.5 -1.2 LysR family transcriptional regulator compare
PS417_08585 -0.5 -1.6 ATPase AAA compare
PS417_05575 -0.5 -3.0 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_09470 -0.5 -0.6 hypothetical protein compare
PS417_10400 -0.5 -2.0 membrane protein compare
PS417_02175 -0.5 -1.5 transcriptional regulator compare
PS417_02720 -0.5 -0.6 TetR family transcriptional regulator compare
PS417_18070 -0.4 -0.7 general secretion pathway protein GspH compare
PS417_05815 -0.4 -1.7 recombinase RecA compare
PS417_06365 -0.4 -2.4 RNA polymerase sigma factor compare
PS417_02160 -0.4 -0.7 hypothetical protein compare
PS417_24705 -0.4 -1.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_10445 -0.4 -1.8 LysR family transcriptional regulator compare
PS417_14420 -0.4 -1.7 acyl-CoA dehydrogenase compare
PS417_04375 -0.4 -0.5 ABC transporter ATP-binding protein compare
PS417_05535 -0.4 -0.7 Fis family transcriptional regulator compare
PS417_02700 -0.4 -1.5 urease accessory protein UreG compare
PS417_03455 -0.4 -0.8 type III secretion protein compare
PS417_10335 -0.4 -1.5 peroxiredoxin compare
PS417_17430 -0.4 -1.9 aldehyde dehydrogenase compare
PS417_00175 -0.4 -0.7 CigR compare
PS417_09600 -0.4 -1.7 glycosyl transferase family 1 compare
PS417_04270 -0.4 -2.5 ribonuclease G compare
PS417_07845 -0.4 -1.0 transcriptional regulator compare
PS417_23580 -0.4 -0.7 peptidylprolyl isomerase compare
PS417_14905 -0.4 -1.0 C4-dicarboxylate ABC transporter compare
PS417_27210 -0.4 -2.2 AsnC family transcriptional regulator compare
PS417_12390 -0.4 -0.9 hypothetical protein compare
PS417_08335 -0.4 -1.0 hypothetical protein compare
PS417_22870 -0.4 -1.0 lipoprotein compare
PS417_19630 -0.4 -0.9 LuxR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress Scopoletin across organisms