Experiment set32S496 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 3 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_27300 -3.6 -1.5 cell division protein ZapA compare
PS417_23950 -3.2 -2.2 polynucleotide phosphorylase/polyadenylase compare
PS417_05975 -3.1 -1.3 chemotaxis protein CheW compare
PS417_20855 -3.1 -1.8 hypothetical protein compare
PS417_21480 -2.9 -2.0 23S rRNA pseudouridylate synthase compare
PS417_19350 -2.8 -5.0 GTP cyclohydrolase compare
PS417_27585 -2.6 -1.6 diaminopimelate epimerase compare
PS417_23360 -2.5 -1.5 hypothetical protein compare
PS417_21655 -2.4 -1.2 aspartate kinase compare
PS417_27940 -2.3 -2.5 type VI secretion protein compare
PS417_16490 -2.3 -1.3 cell division protein FtsK compare
PS417_27795 -2.3 -1.0 orotate phosphoribosyltransferase compare
PS417_01185 -2.2 -7.0 ribosomal protein S6 modification protein compare
PS417_28050 -2.1 -1.7 hypothetical protein compare
PS417_14980 -2.1 -1.5 universal stress protein UspA compare
PS417_09245 -2.1 -1.8 recombinase RdgC compare
PS417_03560 -2.1 -1.4 GTP-binding protein compare
PS417_00920 -2.1 -6.1 diguanylate cyclase compare
PS417_22450 -2.0 -1.4 ATP-dependent DNA helicase RuvA compare
PS417_04590 -2.0 -4.3 methyltransferase compare
PS417_10645 -1.9 -5.6 magnesium ABC transporter ATPase compare
PS417_19600 -1.9 -1.4 exonuclease compare
PS417_23545 -1.9 -2.2 gamma-glutamyl kinase compare
PS417_01915 -1.8 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_02270 -1.6 -3.1 carbamoyltransferase compare
PS417_16195 -1.5 -1.3 AraC family transcriptional regulator compare
PS417_27815 -1.5 -2.0 hypothetical protein compare
PS417_18545 -1.5 -2.5 cell division protein compare
PS417_14940 -1.5 -1.7 LysR family transcriptional regulator compare
PS417_18355 -1.5 -6.8 DNA-binding protein compare
PS417_23820 -1.4 -3.9 hypothetical protein compare
PS417_13895 -1.4 -1.6 chemotaxis protein CheB compare
PS417_26990 -1.4 -0.8 RNA pyrophosphohydrolase compare
PS417_27835 -1.4 -4.4 endoribonuclease compare
PS417_26805 -1.4 -1.2 cell division protein FtsE compare
PS417_03705 -1.4 -2.7 2-alkenal reductase compare
PS417_27870 -1.4 -1.6 ATP-dependent DNA helicase RecG compare
PS417_16370 -1.3 -5.8 chemotaxis protein CheY compare
PS417_04305 -1.3 -1.5 aspartate ammonia-lyase compare
PS417_05445 -1.3 -1.4 DNA mismatch repair protein MutT compare
PS417_27865 -1.3 -1.8 LysR family transcriptional regulator compare
PS417_04475 -1.3 -2.7 hypothetical protein compare
PS417_19335 -1.3 -1.6 isochorismatase compare
PS417_18235 -1.3 -2.6 nitrile hydratase compare
PS417_09590 -1.2 -6.7 membrane protein compare
PS417_00045 -1.2 -1.4 glycerol acyltransferase compare
PS417_15895 -1.2 -2.5 iron dicitrate transport regulator FecR compare
PS417_04595 -1.2 -1.6 cell division protein MraZ compare
PS417_04500 -1.2 -1.1 hypothetical protein compare
PS417_09865 -1.2 -1.9 hypothetical protein compare
PS417_17795 -1.2 -1.5 ABC transporter permease compare
PS417_16825 -1.1 -2.3 membrane protein compare
PS417_12595 -1.1 -1.0 transcriptional regulator compare
PS417_02485 -1.1 -2.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_02950 -1.1 -1.7 tRNA-dihydrouridine synthase B compare
PS417_14755 -1.1 -1.9 UV damage repair endonuclease UvdE compare
PS417_05510 -1.1 -3.3 alpha/beta hydrolase compare
PS417_26985 -1.1 -2.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_09325 -1.1 -2.9 peptidase S41 compare
PS417_01600 -1.1 -4.8 peptidase M23 compare
PS417_17330 -1.1 -2.8 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PS417_03260 -1.1 -0.9 5S ribosomal RNA compare
PS417_10720 -1.1 -4.3 chemotaxis protein CheY compare
PS417_02975 -1.1 -2.4 3-dehydroquinate dehydratase compare
PS417_08155 -1.1 -1.0 integration host factor subunit beta compare
PS417_24115 -1.1 -1.2 hypothetical protein compare
PS417_25720 -1.1 -5.2 anthranilate synthase component II compare
PS417_06680 -1.0 -2.6 nuclease PIN compare
PS417_23475 -1.0 -1.2 hypothetical protein compare
PS417_08515 -1.0 -2.9 hypothetical protein compare
PS417_00550 -1.0 -1.0 hypothetical protein compare
PS417_07615 -1.0 -2.4 TetR family transcriptional regulator compare
PS417_03830 -1.0 -6.1 protein disaggregation chaperone compare
PS417_23995 -1.0 -0.7 preprotein translocase subunit SecG compare
PS417_07120 -1.0 -2.9 RNA polymerase sigma-H factor compare
PS417_03300 -1.0 -1.9 alanine acetyltransferase compare
PS417_21425 -1.0 -1.7 4-amino-4-deoxychorismate lyase compare
PS417_22400 -1.0 -5.2 7-cyano-7-deazaguanine synthase compare
PS417_04585 -1.0 -1.2 hypothetical protein compare
PS417_28510 -1.0 -4.1 chromosome partitioning protein compare
PS417_22575 -1.0 -3.6 exonuclease I compare
PS417_22565 -1.0 -0.4 formyltetrahydrofolate deformylase compare
PS417_02560 -1.0 -0.8 23S rRNA methyltransferase compare
PS417_21105 -1.0 -4.5 aminodeoxychorismate synthase compare
PS417_22630 -1.0 -1.4 hypothetical protein compare
PS417_19995 -1.0 -5.9 Long-chain fatty acid transport protein compare
PS417_06375 -1.0 -0.4 deoxycytidine triphosphate deaminase compare
PS417_22690 -1.0 -1.8 phosphogluconate dehydratase compare
PS417_22405 -0.9 -4.0 7-carboxy-7-deazaguanine synthase compare
PS417_05860 -0.9 -2.2 hypothetical protein compare
PS417_15110 -0.9 -2.7 protein BatD compare
PS417_18690 -0.9 -1.6 aromatic amino acid aminotransferase compare
PS417_23170 -0.9 -1.3 FeS assembly protein IscX compare
PS417_14185 -0.9 -2.1 transcriptional regulator compare
PS417_17215 -0.9 -1.5 peptidylprolyl isomerase compare
PS417_02725 -0.9 -2.6 hypothetical protein compare
PS417_13075 -0.9 -1.3 hypothetical protein compare
PS417_06205 -0.9 -4.3 methionine aminopeptidase compare
PS417_01560 -0.9 -0.8 imidazoleglycerol-phosphate dehydratase compare
PS417_24710 -0.9 -4.0 lipoprotein compare
PS417_24745 -0.9 -1.3 gamma-glutamyl phosphate reductase compare
PS417_24600 -0.9 -3.8 hydrogenase compare
PS417_20610 -0.9 -1.0 hypothetical protein compare
PS417_06030 -0.9 -2.9 hypothetical protein compare
PS417_15970 -0.9 -2.9 hypothetical protein compare
PS417_05905 -0.9 -1.7 hypothetical protein compare
PS417_16160 -0.9 -1.8 ABC transporter substrate-binding protein compare
PS417_05985 -0.9 -1.8 chemotaxis protein CheY compare
PS417_06635 -0.9 -0.8 ferredoxin compare
PS417_05550 -0.9 -2.5 amino acid ABC transporter permease compare
PS417_25155 -0.9 -1.2 hypothetical protein compare
PS417_20025 -0.8 -1.2 alpha-ribazole phosphatase compare
PS417_18070 -0.8 -0.9 general secretion pathway protein GspH compare
PS417_06620 -0.8 -1.4 hypothetical protein compare
PS417_26800 -0.8 -3.8 cell division protein FtsX compare
PS417_03380 -0.8 -0.7 hypothetical protein compare
PS417_22060 -0.8 -0.7 hypothetical protein compare
PS417_22410 -0.8 -3.4 hypothetical protein compare
PS417_09595 -0.8 -2.9 membrane protein compare
PS417_16560 -0.8 -1.7 GNAT family acetyltransferase compare
PS417_21515 -0.8 -4.0 transcriptional regulator compare
PS417_01430 -0.8 -2.3 chromosome segregation protein SMC compare
PS417_18370 -0.8 -1.1 hypothetical protein compare
PS417_12005 -0.8 -1.3 hypothetical protein compare
PS417_16855 -0.8 -1.4 cation:proton antiporter compare
PS417_13525 -0.8 -1.7 membrane protein compare
PS417_22840 -0.8 -1.0 tRNA-Met compare
PS417_18055 -0.8 -0.8 general secretion pathway protein GspK compare
PS417_23755 -0.8 -1.5 membrane protein compare
PS417_14200 -0.8 -1.0 hypothetical protein compare
PS417_08170 -0.8 -3.9 capsular biosynthesis protein compare
PS417_13510 -0.8 -0.7 polyketide cyclase compare
PS417_15790 -0.8 -1.9 hypothetical protein compare
PS417_28020 -0.8 -1.7 chorismate--pyruvate lyase compare
PS417_27605 -0.7 -3.1 hypothetical protein compare
PS417_26695 -0.7 -0.9 uracil phosphoribosyltransferase compare
PS417_13620 -0.7 -1.1 thermostable hemolysin compare
PS417_25815 -0.7 -1.3 magnesium transporter ApaG compare
PS417_22160 -0.7 -3.2 3-beta hydroxysteroid dehydrogenase compare
PS417_04380 -0.7 -0.5 ABC transporter permease compare
PS417_24785 -0.7 -1.1 nucleoside-diphosphate sugar epimerase compare
PS417_17610 -0.7 -1.0 AsnC family transcriptional regulator compare
PS417_24385 -0.7 -1.9 tRNA (uracil-5-)-methyltransferase compare
PS417_03515 -0.7 -1.2 type III secretion protein compare
PS417_18540 -0.7 -1.8 colicin V production CvpA compare
PS417_06365 -0.7 -3.3 RNA polymerase sigma factor compare
PS417_21015 -0.7 -1.0 EstX protein compare
PS417_21270 -0.7 -1.3 translation initiation factor 2 compare
PS417_27155 -0.7 -1.1 aliphatic sulfonates transport ATP-binding subunit compare
PS417_07695 -0.7 -2.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_25120 -0.7 -3.1 capsular biosynthesis protein compare
PS417_24780 -0.7 -5.1 peptidase C13 compare
PS417_05560 -0.7 -1.5 ABC transporter compare
PS417_02385 -0.7 -0.7 esterase compare
PS417_15035 -0.7 -1.0 alkylhydroperoxidase compare
PS417_11300 -0.7 -1.5 general secretion pathway protein GspE compare
PS417_27140 -0.7 -1.6 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
PS417_15975 -0.7 -1.0 glutamate carboxypeptidase compare
PS417_09035 -0.7 -1.9 hypothetical protein compare
PS417_06710 -0.7 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_09235 -0.7 -0.7 molecular chaperone compare
PS417_16850 -0.7 -2.2 cation:proton antiporter compare
PS417_19645 -0.7 -1.0 chemotaxis protein compare
PS417_27075 -0.7 -1.1 thiol-disulfide isomerase compare
PS417_21625 -0.7 -0.6 DNA-binding protein compare
PS417_16710 -0.7 -2.9 hydrolase compare
PS417_01945 -0.7 -1.4 nuclease compare
PS417_17780 -0.7 -0.7 Ais protein compare
PS417_17190 -0.7 -1.9 MarR family transcriptional regulator compare
PS417_25985 -0.7 -1.3 dethiobiotin synthetase compare
PS417_13425 -0.7 -1.2 cupin compare
PS417_14850 -0.7 -1.9 hypothetical protein compare
PS417_03190 -0.7 -1.7 antibiotic biosynthesis monooxygenase compare
PS417_12025 -0.7 -2.0 DSBA oxidoreductase compare
PS417_22935 -0.7 -1.3 hypothetical protein compare
PS417_27305 -0.7 -2.6 5-formyltetrahydrofolate cyclo-ligase compare
PS417_24705 -0.7 -0.8 D-alanyl-D-alanine carboxypeptidase compare
PS417_22375 -0.7 -0.6 cold-shock protein compare
PS417_20115 -0.7 -1.5 hypothetical protein compare
PS417_15135 -0.7 -1.0 hypothetical protein compare
PS417_07165 -0.6 -2.6 dihydrodipicolinate synthase compare
PS417_11810 -0.6 -1.0 oxidoreductase compare
PS417_10220 -0.6 -1.6 hypothetical protein compare
PS417_23825 -0.6 -2.3 penicillin-binding protein compare
PS417_06730 -0.6 -0.8 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_19660 -0.6 -3.4 cobalamin biosynthesis protein CobQ compare
PS417_01565 -0.6 -2.4 imidazole glycerol phosphate synthase compare
PS417_20790 -0.6 -2.2 adenine phosphoribosyltransferase compare
PS417_01435 -0.6 -0.9 hypothetical protein compare
PS417_27975 -0.6 -1.4 type VI secretion protein compare
PS417_26275 -0.6 -1.4 glycine/betaine ABC transporter substrate-binding protein compare
PS417_15890 -0.6 -1.2 RNA polymerase sigma factor compare
PS417_16515 -0.6 -2.0 Clp protease ClpS compare
PS417_01190 -0.6 -3.4 diguanylate phosphodiesterase compare
PS417_19425 -0.6 -0.6 allantoicase compare
PS417_22025 -0.6 -2.3 LysR family transcriptional regulator compare
PS417_09600 -0.6 -1.8 glycosyl transferase family 1 compare
PS417_10045 -0.6 -2.0 hypothetical protein compare
PS417_00085 -0.6 -0.9 16S rRNA methyltransferase compare
PS417_20715 -0.6 -0.8 cytochrome Cbb3 compare


Specific Phenotypes

For 8 genes in this experiment

For liquid stress 80% Methanol in Pseudomonas simiae WCS417

For liquid stress 80% Methanol across organisms