Experiment set32S495 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 2 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_23950 -4.5 -3.1 polynucleotide phosphorylase/polyadenylase compare
PS417_21480 -4.2 -2.9 23S rRNA pseudouridylate synthase compare
PS417_16555 -3.5 -2.4 cupin compare
PS417_27795 -3.1 -1.3 orotate phosphoribosyltransferase compare
PS417_23915 -3.1 -5.6 pantoate--beta-alanine ligase compare
PS417_02280 -2.7 -2.3 GlcNAc-PI de-N-acetylase compare
PS417_01915 -2.6 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_01605 -2.6 -1.8 phosphoglycerate mutase compare
PS417_28050 -2.6 -1.9 hypothetical protein compare
PS417_22570 -2.5 -1.4 H-NS histone compare
PS417_04500 -2.4 -2.3 hypothetical protein compare
PS417_26990 -2.3 -1.3 RNA pyrophosphohydrolase compare
PS417_18310 -2.2 -1.5 hypothetical protein compare
PS417_26730 -2.0 -1.2 pyrroline-5-carboxylate reductase compare
PS417_03260 -1.9 -1.5 5S ribosomal RNA compare
PS417_24705 -1.9 -2.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_06375 -1.8 -0.7 deoxycytidine triphosphate deaminase compare
PS417_22565 -1.8 -0.7 formyltetrahydrofolate deformylase compare
PS417_00920 -1.8 -6.7 diguanylate cyclase compare
PS417_27870 -1.7 -2.7 ATP-dependent DNA helicase RecG compare
PS417_21425 -1.7 -2.9 4-amino-4-deoxychorismate lyase compare
PS417_24745 -1.7 -2.6 gamma-glutamyl phosphate reductase compare
PS417_03560 -1.7 -1.8 GTP-binding protein compare
PS417_24710 -1.6 -8.0 lipoprotein compare
PS417_21430 -1.6 -1.5 3-oxoacyl-ACP synthase compare
PS417_25720 -1.6 -5.5 anthranilate synthase component II compare
PS417_08155 -1.6 -1.6 integration host factor subunit beta compare
PS417_19350 -1.5 -3.3 GTP cyclohydrolase compare
PS417_01560 -1.5 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_10645 -1.5 -4.4 magnesium ABC transporter ATPase compare
PS417_24605 -1.5 -2.1 thiamine-phosphate pyrophosphorylase compare
PS417_06680 -1.5 -4.5 nuclease PIN compare
PS417_07615 -1.4 -4.9 TetR family transcriptional regulator compare
PS417_20880 -1.4 -3.8 GntR family transcriptional regulator compare
PS417_23995 -1.4 -1.1 preprotein translocase subunit SecG compare
PS417_09235 -1.3 -1.3 molecular chaperone compare
PS417_26775 -1.3 -5.9 thiazole synthase compare
PS417_05975 -1.3 -0.9 chemotaxis protein CheW compare
PS417_02475 -1.3 -2.9 N-acetylmuramoyl-L-alanine amidase compare
PS417_05695 -1.3 -3.8 transcriptional regulator compare
PS417_02880 -1.2 -1.7 copper chaperone compare
PS417_09245 -1.2 -1.8 recombinase RdgC compare
PS417_21105 -1.2 -6.0 aminodeoxychorismate synthase compare
PS417_24600 -1.2 -5.9 hydrogenase compare
PS417_02270 -1.2 -3.3 carbamoyltransferase compare
PS417_27835 -1.2 -6.9 endoribonuclease compare
PS417_04585 -1.2 -1.8 hypothetical protein compare
PS417_18545 -1.2 -2.4 cell division protein compare
PS417_23545 -1.1 -1.9 gamma-glutamyl kinase compare
PS417_02415 -1.1 -3.5 phosphoserine phosphatase compare
PS417_08410 -1.1 -1.9 hypothetical protein compare
PS417_02805 -1.1 -1.3 urease subunit gamma compare
PS417_19995 -1.1 -4.2 Long-chain fatty acid transport protein compare
PS417_08730 -1.1 -2.1 cytochrome C compare
PS417_06500 -1.1 -1.7 hypothetical protein compare
PS417_04440 -1.0 -2.4 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_00345 -1.0 -1.4 copper-binding protein compare
PS417_08580 -1.0 -4.1 histidine kinase compare
PS417_23025 -1.0 -3.3 murein transglycosylase compare
PS417_09590 -1.0 -3.1 membrane protein compare
PS417_06365 -1.0 -5.0 RNA polymerase sigma factor compare
PS417_23360 -0.9 -1.1 hypothetical protein compare
PS417_13510 -0.9 -1.1 polyketide cyclase compare
PS417_19720 -0.9 -1.7 DNA-binding protein compare
PS417_06730 -0.9 -1.6 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_11925 -0.9 -1.2 hypothetical protein compare
PS417_27785 -0.9 -4.4 phosphoglucomutase compare
PS417_03300 -0.9 -2.0 alanine acetyltransferase compare
PS417_05595 -0.9 -5.8 ornithine carbamoyltransferase compare
PS417_07470 -0.9 -1.5 hypothetical protein compare
PS417_20855 -0.9 -1.3 hypothetical protein compare
PS417_22895 -0.9 -3.8 tyrosine recombinase XerD compare
PS417_01565 -0.9 -2.4 imidazole glycerol phosphate synthase compare
PS417_01855 -0.9 -1.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_07710 -0.9 -1.8 membrane protein compare
PS417_04475 -0.9 -3.0 hypothetical protein compare
PS417_17330 -0.8 -3.7 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PS417_04595 -0.8 -1.6 cell division protein MraZ compare
PS417_25985 -0.8 -1.9 dethiobiotin synthetase compare
PS417_16510 -0.8 -3.7 Clp protease ClpX compare
PS417_08170 -0.8 -4.6 capsular biosynthesis protein compare
PS417_20915 -0.8 -1.9 hypothetical protein compare
PS417_27490 -0.8 -2.0 hypothetical protein compare
PS417_27245 -0.8 -1.5 aminotransferase DegT compare
PS417_01575 -0.8 -1.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_12565 -0.8 -1.9 2-dehydro-3-deoxygluconokinase compare
PS417_26270 -0.8 -1.4 AraC family transcriptional regulator compare
PS417_27865 -0.8 -1.5 LysR family transcriptional regulator compare
PS417_23725 -0.8 -1.9 methylmalonate-semialdehyde dehydrogenase compare
PS417_02485 -0.8 -1.8 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_02555 -0.8 -4.9 exoribonuclease R compare
PS417_28510 -0.7 -3.4 chromosome partitioning protein compare
PS417_24895 -0.7 -1.2 hypothetical protein compare
PS417_15095 -0.7 -1.7 hypothetical protein compare
PS417_09210 -0.7 -1.5 TetR family transcriptional regulator compare
PS417_04420 -0.7 -4.1 histidinol dehydrogenase compare
PS417_19645 -0.7 -2.6 chemotaxis protein compare
PS417_26370 -0.7 -1.9 RNA helicase compare
PS417_09630 -0.7 -3.0 glycosyl transferase compare
PS417_22535 -0.7 -4.0 ornithine acetyltransferase compare
PS417_18370 -0.7 -2.1 hypothetical protein compare
PS417_05985 -0.7 -1.5 chemotaxis protein CheY compare
PS417_26985 -0.7 -3.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_10685 -0.7 -2.9 acyl-CoA dehydrogenase compare
PS417_21355 -0.7 -2.1 hypothetical protein compare
PS417_16195 -0.7 -0.9 AraC family transcriptional regulator compare
PS417_16370 -0.7 -3.2 chemotaxis protein CheY compare
PS417_23820 -0.7 -2.2 hypothetical protein compare
PS417_02950 -0.7 -1.8 tRNA-dihydrouridine synthase B compare
PS417_07695 -0.7 -2.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_23375 -0.7 -1.3 cytochrome C oxidase compare
PS417_25320 -0.7 -3.6 dTDP-4-dehydrorhamnose reductase compare
PS417_15090 -0.7 -1.0 hypothetical protein compare
PS417_13620 -0.7 -0.9 thermostable hemolysin compare
PS417_08360 -0.7 -1.5 DoxX family protein compare
PS417_22380 -0.7 -2.1 hypothetical protein compare
PS417_08030 -0.7 -2.9 transcriptional regulator compare
PS417_27475 -0.7 -1.8 membrane protein compare
PS417_22530 -0.7 -2.6 hypothetical protein compare
PS417_14755 -0.7 -0.8 UV damage repair endonuclease UvdE compare
PS417_19160 -0.7 -2.8 hypothetical protein compare
PS417_17190 -0.7 -2.5 MarR family transcriptional regulator compare
PS417_22190 -0.7 -3.3 diguanylate cyclase compare
PS417_00925 -0.7 -1.8 hypothetical protein compare
PS417_08650 -0.7 -2.2 transcriptional regulator compare
PS417_11720 -0.6 -2.4 class V aminotransferase compare
PS417_12635 -0.6 -1.2 alkanesulfonate monooxygenase compare
PS417_25825 -0.6 -1.9 sulfurtransferase compare
PS417_25390 -0.6 -1.8 MFS transporter compare
PS417_20125 -0.6 -1.8 phosphoribosylglycinamide formyltransferase compare
PS417_00370 -0.6 -0.7 hypothetical protein compare
PS417_19145 -0.6 -4.8 membrane protein compare
PS417_08575 -0.6 -2.3 MarR family transcriptional regulator compare
PS417_06465 -0.6 -1.3 transcriptional regulator compare
PS417_27075 -0.6 -1.3 thiol-disulfide isomerase compare
PS417_22350 -0.6 -1.2 Fis family transcriptional regulator compare
PS417_27665 -0.6 -2.7 diguanylate cyclase compare
PS417_14600 -0.6 -1.1 bleomycin resistance protein compare
PS417_10995 -0.6 -2.0 GntR family transcriptional regulator compare
PS417_16855 -0.6 -0.9 cation:proton antiporter compare
PS417_27360 -0.6 -2.4 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_10640 -0.6 -2.0 GNAT family acetyltransferase compare
PS417_05865 -0.6 -1.1 hypothetical protein compare
PS417_01270 -0.6 -1.5 iron ABC transporter substrate-binding protein compare
PS417_02255 -0.6 -1.7 lipopolysaccharide kinase compare
PS417_18540 -0.6 -1.4 colicin V production CvpA compare
PS417_16950 -0.6 -1.9 fimbrial protein compare
PS417_02745 -0.6 -1.5 FMN-dependent NADH-azoreductase compare
PS417_19605 -0.6 -0.9 hypothetical protein compare
PS417_09915 -0.6 -1.0 hypothetical protein compare
PS417_02770 -0.6 -2.0 membrane protein compare
PS417_27715 -0.6 -1.1 Fe-S oxidoreductase compare
PS417_10985 -0.6 -0.8 NADH:flavin oxidoreductase compare
PS417_22945 -0.6 -1.5 phosphoribosylglycinamide formyltransferase compare
PS417_10720 -0.6 -2.0 chemotaxis protein CheY compare
PS417_02210 -0.6 -2.2 diguanylate cyclase compare
PS417_07575 -0.6 -2.2 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_19955 -0.6 -1.0 hypothetical protein compare
PS417_04980 -0.6 -2.1 response regulator receiver protein compare
PS417_27605 -0.6 -2.9 hypothetical protein compare
PS417_26805 -0.6 -0.8 cell division protein FtsE compare
PS417_02865 -0.6 -2.1 peptidase compare
PS417_15465 -0.6 -1.8 carboxynorspermidine decarboxylase compare
PS417_06030 -0.6 -1.9 hypothetical protein compare
PS417_06735 -0.6 -1.6 3-oxoadipate enol-lactonase compare
PS417_25155 -0.5 -1.0 hypothetical protein compare
PS417_25175 -0.5 -1.3 hypothetical protein compare
PS417_09595 -0.5 -2.4 membrane protein compare
PS417_28185 -0.5 -1.5 homocysteine methyltransferase compare
PS417_10675 -0.5 -0.8 TetR family transcriptional regulator compare
PS417_04380 -0.5 -0.4 ABC transporter permease compare
PS417_22575 -0.5 -2.8 exonuclease I compare
PS417_20705 -0.5 -1.2 cbb3-type cytochrome c oxidase subunit II compare
PS417_01435 -0.5 -1.0 hypothetical protein compare
PS417_00995 -0.5 -1.3 alpha/beta hydrolase compare
PS417_24270 -0.5 -2.8 threonine transporter RhtB compare
PS417_12765 -0.5 -1.9 oxidoreductase compare
PS417_26555 -0.5 -1.2 endoribonuclease L-PSP compare
PS417_27195 -0.5 -0.7 N-acetylglutamate synthase compare
PS417_09615 -0.5 -1.4 glycosyl transferase family 1 compare
PS417_07945 -0.5 -1.7 hypothetical protein compare
PS417_09600 -0.5 -2.5 glycosyl transferase family 1 compare
PS417_06245 -0.5 -0.6 zinc metallopeptidase RseP compare
PS417_18355 -0.5 -3.1 DNA-binding protein compare
PS417_08220 -0.5 -0.6 epimerase compare
PS417_05900 -0.5 -0.9 TetR family transcriptional regulator compare
PS417_27425 -0.5 -2.7 exopolyphosphatase compare
PS417_01600 -0.5 -2.7 peptidase M23 compare
PS417_16560 -0.5 -1.4 GNAT family acetyltransferase compare
PS417_21515 -0.5 -2.9 transcriptional regulator compare
PS417_06100 -0.5 -1.1 SAM-dependent methyltransferase compare
PS417_05560 -0.5 -1.3 ABC transporter compare
PS417_06335 -0.5 -1.6 S-formylglutathione hydrolase compare
PS417_14940 -0.5 -1.0 LysR family transcriptional regulator compare
PS417_23810 -0.5 -3.0 acetolactate synthase 3 catalytic subunit compare
PS417_07065 -0.5 -3.2 tripartite tricarboxylate transporter TctA compare
PS417_12540 -0.5 -1.5 hypothetical protein compare
PS417_23910 -0.5 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_09585 -0.5 -2.4 acetyltransferase compare
PS417_08685 -0.5 -0.9 flagellar hook-length control protein FliK compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress 80% Methanol across organisms