Experiment set32S495 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 2 mM; liquid stress

200 most detrimental genes:

  gene name fitness t score description  
PS417_19825 +4.7 32.9 ATPase AAA compare
PS417_24275 +3.5 30.0 diguanylate phosphodiesterase compare
PS417_27875 +3.1 25.3 histidine kinase compare
PS417_19830 +1.9 2.5 flagellar assembly protein FliT compare
PS417_01400 +1.7 6.7 hypothetical protein compare
PS417_01405 +1.7 5.4 sugar transporter compare
PS417_01410 +1.7 10.6 transporter compare
PS417_01415 +1.7 14.2 glycosyl transferase family 1 compare
PS417_01395 +1.6 15.1 biofilm formation protein PelB compare
PS417_01420 +1.6 14.5 histidine kinase compare
PS417_01390 +1.6 12.6 PbsX family transcriptional regulator compare
PS417_19765 +1.4 12.7 flagellar hook-length control protein compare
PS417_19725 +1.4 8.0 flagellar biosynthesis protein FlhB compare
PS417_19885 +1.4 9.0 flagellar basal body rod protein FlgG compare
PS417_21565 +1.4 8.6 flagellar basal body rod protein FlgC compare
PS417_19710 +1.3 5.0 flagellar biosynthesis protein FlhA compare
PS417_00915 +1.2 2.8 aminotransferase compare
PS417_19745 +1.2 2.7 flagellar assembly protein FliO compare
PS417_19865 +1.2 10.8 flagellar hook protein FlgK compare
PS417_21555 +1.1 9.6 flagellar hook protein FlgE compare
PS417_21570 +1.1 6.9 flagellar basal body rod protein FlgB compare
PS417_19030 +1.1 2.3 sodium:dicarboxylate symporter compare
PS417_21585 +1.1 9.3 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19785 +1.0 7.4 flagellar biogenesis protein compare
PS417_19880 +1.0 6.4 flagellar basal body L-ring protein compare
PS417_19870 +1.0 4.0 flagellar rod assembly protein FlgJ compare
PS417_19695 +1.0 8.3 flagellar biosynthesis sigma factor compare
PS417_15255 +1.0 2.4 serine/threonine protein kinase compare
PS417_19860 +1.0 8.8 flagellar hook protein FlgL compare
PS417_21595 +1.0 5.3 flagellar biosynthesis protein FlgN compare
PS417_26695 +1.0 2.7 uracil phosphoribosyltransferase compare
PS417_26175 +0.9 1.0 sarcosine oxidase subunit gamma compare
PS417_14065 +0.9 5.5 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_00750 +0.9 5.6 N-glycosyltransferase compare
PS417_00040 +0.9 6.0 ATPase compare
PS417_24840 +0.9 3.4 hypothetical protein compare
PS417_11485 +0.9 1.8 AraC family transcriptional regulator compare
PS417_15480 +0.9 2.3 ABC transporter substrate-binding protein compare
PS417_17610 +0.8 1.7 AsnC family transcriptional regulator compare
PS417_19020 +0.8 1.9 dimethylmenaquinone methyltransferase compare
PS417_19840 +0.8 7.0 flagellar cap protein FliD compare
PS417_23315 +0.8 1.8 transcriptional regulator compare
PS417_00025 +0.8 5.3 transcriptional regulator compare
PS417_27590 +0.8 2.9 hypothetical protein compare
PS417_22990 +0.8 0.7 iron dicitrate transport regulator FecR compare
PS417_05010 +0.8 2.8 IclR family transcriptional regulator compare
PS417_21990 +0.8 2.9 LacI family transcriptional regulator compare
PS417_00745 +0.7 4.4 outer membrane N-deacetylase compare
PS417_18920 +0.7 2.5 hypothetical protein compare
PS417_09150 +0.7 2.1 energy transducer TonB compare
PS417_00740 +0.7 5.5 membrane protein compare
PS417_09460 +0.7 2.3 alkanesulfonate monooxygenase compare
PS417_19760 +0.7 4.2 flagellar basal body protein FliL compare
PS417_19795 +0.7 6.4 flagellar assembly protein FliH compare
PS417_07875 +0.7 1.3 hypothetical protein compare
PS417_05400 +0.7 1.4 hypothetical protein compare
PS417_19740 +0.7 4.8 flagellar biosynthesis protein flip compare
PS417_19735 +0.7 4.6 flagellar biosynthesis protein FliQ compare
PS417_15890 +0.7 2.3 RNA polymerase sigma factor compare
PS417_06635 +0.7 1.4 ferredoxin compare
PS417_15215 +0.7 1.3 protein activator of alkane oxidation PraA compare
PS417_15915 +0.7 1.9 hypothetical protein compare
PS417_27585 +0.7 1.2 diaminopimelate epimerase compare
PS417_18055 +0.7 1.2 general secretion pathway protein GspK compare
PS417_01630 +0.7 1.5 hypothetical protein compare
PS417_09545 +0.6 1.4 aldehyde-activating protein compare
PS417_24495 +0.6 1.4 NAD(FAD)-utilizing dehydrogenase compare
PS417_06395 +0.6 1.3 amino acid transporter compare
PS417_10920 +0.6 1.5 LysR family transcriptional regulator compare
PS417_13090 +0.6 2.9 dienelactone hydrolase compare
PS417_13495 +0.6 1.4 nuclease compare
PS417_23105 +0.6 1.8 hypothetical protein compare
PS417_24620 +0.6 1.5 hypothetical protein compare
PS417_06600 +0.6 0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_12730 +0.6 2.1 glycosyltransferase compare
PS417_20685 +0.6 2.8 CAAX protease compare
PS417_04080 +0.6 1.9 peptide ABC transporter substrate-binding protein compare
PS417_15710 +0.6 1.9 nitrate reductase compare
PS417_08825 +0.6 2.0 TetR family transcriptional regulator compare
PS417_21185 +0.6 1.7 hypothetical protein compare
PS417_18025 +0.6 1.9 cytochrome C compare
PS417_17440 +0.6 2.0 beta-lactamase compare
PS417_19505 +0.6 2.3 2,4-diaminobutyrate 4-aminotransferase compare
PS417_04650 +0.6 0.4 D-alanine--D-alanine ligase compare
PS417_21560 +0.6 2.0 flagellar basal body rod modification protein FlgD compare
PS417_10135 +0.6 1.4 phage tail protein compare
PS417_02675 +0.6 1.7 ABC transporter ATP-binding protein compare
PS417_06355 +0.6 3.2 protein-L-isoaspartate O-methyltransferase compare
PS417_00030 +0.5 1.1 hypothetical protein compare
PS417_06845 +0.5 1.2 lipoprotein compare
PS417_05610 +0.5 1.9 bacterioferritin compare
PS417_01385 +0.5 1.5 NAD-dependent dehydratase compare
PS417_11535 +0.5 2.1 nicotinate phosphoribosyltransferase compare
PS417_02435 +0.5 3.6 flagellar motor protein MotA compare
PS417_18775 +0.5 2.7 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
PS417_12910 +0.5 1.8 alanine racemase compare
PS417_15455 +0.5 2.9 ABC transporter substrate-binding protein compare
PS417_26280 +0.5 1.8 NADPH:quinone reductase compare
PS417_17565 +0.5 1.2 branched-chain amino acid aminotransferase compare
PS417_02440 +0.5 1.6 flagellar motor protein MotB compare
PS417_24225 +0.5 1.7 hypothetical protein compare
PS417_00630 +0.5 3.6 nitrate ABC transporter substrate-binding protein compare
PS417_00625 +0.5 3.1 taurine dioxygenase compare
PS417_17830 +0.5 2.0 4-hydroxyphenylacetate isomerase compare
PS417_19730 +0.5 2.7 flagellar biosynthesis protein FliR compare
PS417_28450 +0.5 1.5 XRE family transcriptional regulator compare
PS417_24175 +0.5 4.1 hypothetical protein compare
PS417_13055 +0.5 1.5 aminotransferase compare
PS417_24170 +0.5 4.8 cell division protein FtsK compare
PS417_16055 +0.5 1.9 biopolymer transporter TolR compare
PS417_22175 +0.5 1.2 amino acid transporter LysE compare
PS417_19800 +0.5 1.8 flagellar motor switch protein FliG compare
PS417_14255 +0.5 1.4 phosphate import ATP-binding protein PstB compare
PS417_07360 +0.5 2.6 ArtI protein compare
PS417_00195 +0.5 1.5 hypothetical protein compare
PS417_12515 +0.5 1.6 lactate dehydrogenase compare
PS417_06685 +0.5 0.7 beta-ketoadipyl CoA thiolase compare
PS417_12775 +0.5 1.9 GntR family transcriptional regulator compare
PS417_16000 +0.5 1.6 chemotaxis protein CheY compare
PS417_15535 +0.5 1.3 oxidoreductase compare
PS417_28070 +0.5 2.9 phosphate ABC transporter ATP-binding protein compare
PS417_17900 +0.5 0.8 transcriptional regulator compare
PS417_06850 +0.5 1.0 methanol dehydrogenase compare
PS417_28320 +0.5 2.1 metal ABC transporter substrate-binding protein compare
PS417_14775 +0.5 1.5 major facilitator transporter compare
PS417_14285 +0.5 0.9 hypothetical protein compare
PS417_22720 +0.5 2.7 membrane protein compare
PS417_21255 +0.5 1.2 hypothetical protein compare
PS417_28085 +0.5 3.6 phosphate-binding protein compare
PS417_17120 +0.5 2.1 protein kinase compare
PS417_18400 +0.5 1.3 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_05410 +0.5 1.7 membrane protein compare
PS417_23760 +0.5 3.4 DeoR faimly transcriptional regulator compare
PS417_09655 +0.5 1.7 RNA polymerase sigma factor compare
PS417_26765 +0.5 2.3 membrane protein compare
PS417_04950 +0.5 1.2 hypothetical protein compare
PS417_27415 +0.5 1.1 fimbrial chaperone protein compare
PS417_25650 +0.5 1.5 anhydro-N-acetylmuramic acid kinase compare
PS417_17345 +0.5 1.6 hypothetical protein compare
PS417_12165 +0.5 1.5 microcin ABC transporter ATP-binding protein compare
PS417_28275 +0.4 1.5 cobalamin biosynthesis protein CobW compare
PS417_11865 +0.4 1.4 xylose isomerase compare
PS417_12985 +0.4 1.5 DNA-binding protein compare
PS417_23150 +0.4 2.0 Cro/Cl family transcriptional regulator compare
PS417_19755 +0.4 1.3 flagellar motor switch protein FliM compare
PS417_28020 +0.4 1.8 chorismate--pyruvate lyase compare
PS417_08510 +0.4 0.9 LysR family transcriptional regulator compare
PS417_26040 +0.4 2.4 malate synthase compare
PS417_00355 +0.4 1.2 metal ABC transporter permease compare
PS417_04180 +0.4 0.9 GntR family transcriptional regulator compare
PS417_24180 +0.4 3.8 hypothetical protein compare
PS417_02980 +0.4 1.0 chemotaxis protein compare
PS417_24145 +0.4 1.7 hypothetical protein compare
PS417_10695 +0.4 1.8 decarboxylase compare
PS417_07195 +0.4 2.1 hypothetical protein compare
PS417_24290 +0.4 1.9 hypothetical protein compare
PS417_24030 +0.4 1.2 MFS transporter compare
PS417_15895 +0.4 1.6 iron dicitrate transport regulator FecR compare
PS417_20830 +0.4 2.0 transporter compare
PS417_26170 +0.4 1.4 formyltetrahydrofolate deformylase compare
PS417_26120 +0.4 1.4 hypothetical protein compare
PS417_14565 +0.4 1.5 chemotaxis protein compare
PS417_21510 +0.4 0.8 histidine kinase compare
PS417_08250 +0.4 1.1 competence protein ComEA compare
PS417_15820 +0.4 1.0 universal stress protein UspA compare
PS417_09935 +0.4 2.1 hypothetical protein compare
PS417_28405 +0.4 1.7 hypothetical protein compare
PS417_11175 +0.4 1.0 AraC family transcriptional regulator compare
PS417_17065 +0.4 0.6 catalase compare
PS417_15805 +0.4 1.1 transporter compare
PS417_17670 +0.4 1.6 ABC transporter permease compare
PS417_07510 +0.4 2.5 aspartyl beta-hydroxylase compare
PS417_20035 +0.4 2.5 adenosylcobinamide kinase compare
PS417_19835 +0.4 0.5 flagellar biosynthesis protein FliS compare
PS417_27940 +0.4 0.8 type VI secretion protein compare
PS417_15030 +0.4 0.9 short-chain dehydrogenase compare
PS417_22300 +0.4 0.9 LTXXQ domain protein compare
PS417_21945 +0.4 1.0 RNA polymerase subunit sigma-24 compare
PS417_15260 +0.4 2.1 protein phosphatase compare
PS417_26900 +0.4 0.7 L-cystine transporter tcyP compare
PS417_06075 +0.4 1.1 hypothetical protein compare
PS417_18395 +0.4 0.8 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_23225 +0.4 2.2 hypothetical protein compare
PS417_13670 +0.4 2.3 protease compare
PS417_10825 +0.4 1.5 glycine/betaine ABC transporter substrate-binding protein compare
PS417_06965 +0.4 1.0 cysteine methyltransferase compare
PS417_08860 +0.4 2.1 small component of pyruvate transporter (yjcH-like) (from data) compare
PS417_04050 +0.4 1.4 peptide ABC transporter ATP-binding protein compare
PS417_20310 +0.4 1.4 hypothetical protein compare
PS417_21670 +0.4 1.6 6,7-dimethyl-8-ribityllumazine synthase compare
PS417_27335 +0.4 2.4 flagellar basal body protein FliL compare
PS417_13580 +0.4 1.4 AraC family transcriptional regulator compare
PS417_27675 +0.4 1.8 xanthine phosphoribosyltransferase compare
PS417_15270 +0.4 1.8 membrane protein compare
PS417_19440 +0.4 1.2 purine permease compare
PS417_28295 +0.4 1.0 glutamine synthetase compare
PS417_15750 +0.4 1.2 protease compare
PS417_25135 +0.4 1.3 hypothetical protein compare
PS417_06015 +0.4 1.8 hypothetical protein compare
PS417_19200 +0.4 1.3 fumarate hydratase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress 80% Methanol across organisms