Experiment set32S491 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 1 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_27865 -5.3 -5.1 LysR family transcriptional regulator compare
PS417_21480 -4.5 -3.0 23S rRNA pseudouridylate synthase compare
PS417_22450 -3.6 -2.5 ATP-dependent DNA helicase RuvA compare
PS417_28070 -3.5 -8.3 phosphate ABC transporter ATP-binding protein compare
PS417_28080 -3.3 -15.5 phosphate ABC transporter permease compare
PS417_23380 -3.1 -2.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_27795 -3.1 -1.2 orotate phosphoribosyltransferase compare
PS417_05365 -3.1 -3.7 FAD-binding protein compare
PS417_23915 -2.9 -3.5 pantoate--beta-alanine ligase compare
PS417_06680 -2.8 -5.6 nuclease PIN compare
PS417_28085 -2.5 -14.1 phosphate-binding protein compare
PS417_00755 -2.5 -1.4 biofilm PGA synthesis protein PgaD compare
PS417_21625 -2.4 -1.7 DNA-binding protein compare
PS417_10985 -2.2 -1.8 NADH:flavin oxidoreductase compare
PS417_16555 -2.2 -1.9 cupin compare
PS417_16490 -2.1 -1.7 cell division protein FtsK compare
PS417_02280 -2.1 -1.6 GlcNAc-PI de-N-acetylase compare
PS417_28075 -2.1 -5.0 phosphate ABC transporter permease compare
PS417_27195 -2.1 -1.9 N-acetylglutamate synthase compare
PS417_28050 -2.0 -1.5 hypothetical protein compare
PS417_14045 -2.0 -6.2 alkyl hydroperoxide reductase compare
PS417_21430 -2.0 -1.9 3-oxoacyl-ACP synthase compare
PS417_23375 -2.0 -1.6 cytochrome C oxidase compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_22565 -1.9 -0.7 formyltetrahydrofolate deformylase compare
PS417_06770 -1.9 -6.4 multidrug transporter compare
PS417_08125 -1.9 -0.7 prephenate dehydratase compare
PS417_23385 -1.9 -7.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_02555 -1.8 -9.0 exoribonuclease R compare
PS417_10645 -1.8 -5.3 magnesium ABC transporter ATPase compare
PS417_23805 -1.8 -3.1 acetolactate synthase 3 regulatory subunit compare
PS417_02975 -1.8 -3.0 3-dehydroquinate dehydratase compare
PS417_26775 -1.7 -9.1 thiazole synthase compare
PS417_24600 -1.7 -5.7 hydrogenase compare
PS417_23810 -1.7 -7.0 acetolactate synthase 3 catalytic subunit compare
PS417_19350 -1.6 -4.0 GTP cyclohydrolase compare
PS417_00045 -1.6 -2.0 glycerol acyltransferase compare
PS417_07710 -1.6 -2.8 membrane protein compare
PS417_22445 -1.6 -3.1 ATP-dependent DNA helicase RuvB compare
PS417_03260 -1.5 -0.8 5S ribosomal RNA compare
PS417_05590 -1.4 -6.2 iron ABC transporter ATP-binding protein compare
PS417_19955 -1.4 -1.8 hypothetical protein compare
PS417_24935 -1.4 -1.4 hypothetical protein compare
PS417_28145 -1.4 -3.3 AraC family transcriptional regulator compare
PS417_00655 -1.4 -6.8 DSBA oxidoreductase compare
PS417_26985 -1.4 -5.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_02255 -1.4 -1.9 lipopolysaccharide kinase compare
PS417_04380 -1.4 -1.1 ABC transporter permease compare
PS417_02485 -1.4 -2.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_08090 -1.3 -1.0 3-oxoacyl-ACP reductase compare
PS417_15075 -1.3 -7.5 NAD-glutamate dehydrogenase compare
PS417_23995 -1.3 -1.0 preprotein translocase subunit SecG compare
PS417_27610 -1.3 -6.5 hypothetical protein compare
PS417_26420 -1.3 -2.1 hypothetical protein compare
PS417_02865 -1.3 -4.5 peptidase compare
PS417_11945 -1.3 -2.0 hypothetical protein compare
PS417_00510 -1.3 -1.4 membrane protein compare
PS417_24745 -1.3 -1.9 gamma-glutamyl phosphate reductase compare
PS417_03465 -1.3 -1.6 type III secretion protein compare
PS417_02270 -1.3 -2.2 carbamoyltransferase compare
PS417_24525 -1.2 -1.4 nuclease compare
PS417_24605 -1.2 -2.3 thiamine-phosphate pyrophosphorylase compare
PS417_11705 -1.2 -5.5 cyclic peptide transporter compare
PS417_06775 -1.2 -4.2 antibiotic transporter compare
PS417_00650 -1.2 -1.1 LysR family transcriptional regulator compare
PS417_23370 -1.2 -2.7 protoheme IX farnesyltransferase compare
PS417_27605 -1.2 -5.1 hypothetical protein compare
PS417_21655 -1.2 -1.4 aspartate kinase compare
PS417_23390 -1.2 -4.8 ubiquinol oxidase subunit II compare
PS417_22840 -1.2 -1.5 tRNA-Met compare
PS417_08170 -1.1 -7.4 capsular biosynthesis protein compare
PS417_06335 -1.1 -2.0 S-formylglutathione hydrolase compare
PS417_03995 -1.1 -3.8 Fe(II)-dependent oxygenase compare
PS417_08540 -1.1 -2.0 RNA helicase compare
PS417_27870 -1.1 -2.0 ATP-dependent DNA helicase RecG compare
PS417_19285 -1.0 -1.7 ankyrin compare
PS417_00665 -1.0 -5.3 RND transporter compare
PS417_01095 -1.0 -1.1 amino acid ABC transporter ATP-binding protein compare
PS417_25405 -1.0 -6.9 catalase compare
PS417_22895 -1.0 -4.9 tyrosine recombinase XerD compare
PS417_27425 -1.0 -4.0 exopolyphosphatase compare
PS417_04365 -1.0 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_04390 -1.0 -1.5 toluene tolerance protein compare
PS417_04385 -1.0 -1.4 organic solvent ABC transporter substrate-binding protein compare
PS417_01565 -1.0 -2.3 imidazole glycerol phosphate synthase compare
PS417_19425 -1.0 -1.1 allantoicase compare
PS417_19835 -0.9 -1.0 flagellar biosynthesis protein FliS compare
PS417_00660 -0.9 -2.2 DSBA oxidoreductase compare
PS417_11075 -0.9 -1.4 hydroxypyruvate isomerase compare
PS417_19675 -0.9 -2.7 chemotaxis protein CheY compare
PS417_22735 -0.9 -5.7 thiol oxidoreductase compare
PS417_22210 -0.9 -1.1 AraC family transcriptional regulator compare
PS417_00345 -0.9 -1.2 copper-binding protein compare
PS417_21630 -0.9 -1.3 magnesium transporter compare
PS417_27640 -0.9 -1.1 TetR family transcriptional regulator compare
PS417_13305 -0.9 -1.4 hypothetical protein compare
PS417_01435 -0.9 -1.3 hypothetical protein compare
PS417_10675 -0.9 -1.0 TetR family transcriptional regulator compare
PS417_17795 -0.8 -1.2 ABC transporter permease compare
PS417_22575 -0.8 -3.9 exonuclease I compare
PS417_03990 -0.8 -5.5 ligand-gated channel protein compare
PS417_00975 -0.8 -1.4 hypothetical protein compare
PS417_19850 -0.8 -4.7 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_05815 -0.8 -2.7 recombinase RecA compare
PS417_12400 -0.8 -2.5 oxidoreductase compare
PS417_05160 -0.8 -0.8 DNA polymerase III subunit chi compare
PS417_22745 -0.8 -3.6 hypothetical protein compare
PS417_22195 -0.8 -2.4 peptidase compare
PS417_09470 -0.8 -1.2 hypothetical protein compare
PS417_23950 -0.8 -0.7 polynucleotide phosphorylase/polyadenylase compare
PS417_11940 -0.8 -5.4 TonB-dependent receptor compare
PS417_21090 -0.8 -2.1 hypothetical protein compare
PS417_04650 -0.8 -0.4 D-alanine--D-alanine ligase compare
PS417_13055 -0.8 -1.3 aminotransferase compare
PS417_26605 -0.8 -1.0 malonate decarboxylase subunit beta compare
PS417_15480 -0.8 -1.3 ABC transporter substrate-binding protein compare
PS417_08130 -0.8 -1.4 aspartate aminotransferase compare
PS417_04420 -0.8 -4.2 histidinol dehydrogenase compare
PS417_20985 -0.8 -0.5 porin compare
PS417_13255 -0.8 -1.9 ABC transporter compare
PS417_11540 -0.8 -2.8 NAD synthetase compare
PS417_11460 -0.8 -4.4 divalent metal cation transporter MntH compare
PS417_22270 -0.7 -2.8 hypothetical protein compare
PS417_07565 -0.7 -1.7 hypothetical protein compare
PS417_26900 -0.7 -1.3 L-cystine transporter tcyP compare
PS417_22620 -0.7 -2.2 pyruvate kinase compare
PS417_03000 -0.7 -1.4 translation initiation factor Sui1 compare
PS417_11615 -0.7 -1.6 urea ABC transporter ATP-binding protein compare
PS417_23900 -0.7 -4.2 poly(A) polymerase compare
PS417_18495 -0.7 -1.5 hypothetical protein compare
PS417_05010 -0.7 -1.3 IclR family transcriptional regulator compare
PS417_15800 -0.7 -2.9 photosynthetic protein synthase I compare
PS417_21745 -0.7 -2.7 ABC transporter for L-Arginine, substrate-binding component (from data) compare
PS417_17380 -0.7 -1.5 membrane protein compare
PS417_04960 -0.7 -1.4 hypothetical protein compare
PS417_09615 -0.7 -2.9 glycosyl transferase family 1 compare
PS417_25390 -0.7 -1.6 MFS transporter compare
PS417_14940 -0.7 -1.3 LysR family transcriptional regulator compare
PS417_19840 -0.7 -4.6 flagellar cap protein FliD compare
PS417_14040 -0.7 -2.7 alkyl hydroperoxide reductase compare
PS417_18310 -0.7 -0.6 hypothetical protein compare
PS417_22175 -0.7 -1.1 amino acid transporter LysE compare
PS417_00085 -0.7 -1.3 16S rRNA methyltransferase compare
PS417_17680 -0.7 -2.0 ABC transporter compare
PS417_01955 -0.7 -4.3 peptidase compare
PS417_16845 -0.7 -2.0 monovalent cation/H+ antiporter subunit E compare
PS417_19940 -0.7 -4.7 membrane protein compare
PS417_12655 -0.7 -3.5 methionine aminopeptidase compare
PS417_15585 -0.7 -1.5 DNA repair nucleotidyltransferase compare
PS417_26500 -0.7 -2.2 thioesterase compare
PS417_07540 -0.7 -1.2 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_24705 -0.7 -1.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_06365 -0.7 -3.9 RNA polymerase sigma factor compare
PS417_01560 -0.7 -1.5 imidazoleglycerol-phosphate dehydratase compare
PS417_11390 -0.7 -2.1 LysR family transcriptional regulator compare
PS417_13175 -0.7 -1.1 iron transporter compare
PS417_19665 -0.7 -2.7 flagellar motor protein MotD compare
PS417_06330 -0.7 -2.7 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_25720 -0.7 -2.9 anthranilate synthase component II compare
PS417_03300 -0.7 -1.5 alanine acetyltransferase compare
PS417_05735 -0.7 -2.1 tail fiber protein compare
PS417_13545 -0.7 -1.4 arginine aminotransferase compare
PS417_04270 -0.7 -3.2 ribonuclease G compare
PS417_27665 -0.6 -1.7 diguanylate cyclase compare
PS417_20130 -0.6 -4.3 dehydrogenase compare
PS417_01605 -0.6 -0.7 phosphoglycerate mutase compare
PS417_19755 -0.6 -1.3 flagellar motor switch protein FliM compare
PS417_06895 -0.6 -1.8 DNA-binding protein compare
PS417_07455 -0.6 -1.4 glutamine amidotransferase compare
PS417_24615 -0.6 -1.0 hypothetical protein compare
PS417_08665 -0.6 -2.5 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_02990 -0.6 -1.4 hypothetical protein compare
PS417_05595 -0.6 -3.5 ornithine carbamoyltransferase compare
PS417_07515 -0.6 -4.9 aconitate hydratase compare
PS417_12585 -0.6 -3.3 acriflavine resistance protein B compare
PS417_17855 -0.6 -1.3 major facilitator transporter compare
PS417_16560 -0.6 -1.3 GNAT family acetyltransferase compare
PS417_09600 -0.6 -2.2 glycosyl transferase family 1 compare
PS417_07695 -0.6 -2.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_03830 -0.6 -3.5 protein disaggregation chaperone compare
PS417_11965 -0.6 -1.8 GCN5 family acetyltransferase compare
PS417_05210 -0.6 -2.4 copper oxidase compare
PS417_26145 -0.6 -1.9 hypothetical protein compare
PS417_14295 -0.6 -2.0 AraC family transcriptional regulator compare
PS417_02175 -0.6 -2.0 transcriptional regulator compare
PS417_07640 -0.6 -2.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_21695 -0.6 -1.4 succinylglutamate-semialdehyde dehydrogenase compare
PS417_10185 -0.6 -2.1 hypothetical protein compare
PS417_15540 -0.6 -1.0 NUDIX hydrolase compare
PS417_00355 -0.6 -1.2 metal ABC transporter permease compare
PS417_05445 -0.6 -1.0 DNA mismatch repair protein MutT compare
PS417_14810 -0.6 -1.4 Fosmidomycin resistance protein compare
PS417_21105 -0.6 -2.9 aminodeoxychorismate synthase compare
PS417_01580 -0.6 -1.0 imidazole glycerol phosphate synthase compare
PS417_08680 -0.6 -1.0 flagellar biosynthesis protein FlhB compare
PS417_19885 -0.6 -1.3 flagellar basal body rod protein FlgG compare
PS417_09930 -0.6 -1.0 hypothetical protein compare
PS417_15095 -0.6 -1.2 hypothetical protein compare
PS417_28230 -0.6 -1.4 transcriptional regulator compare
PS417_16390 -0.6 -2.3 peroxiredoxin compare


Specific Phenotypes

For 1 genes in this experiment

For solid stress Fraxetin in Pseudomonas simiae WCS417

For solid stress Fraxetin across organisms