Experiment set32S490 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 0.5 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -4.7 -5.6 pantoate--beta-alanine ligase compare
PS417_28050 -3.6 -4.1 hypothetical protein compare
PS417_27865 -3.5 -4.3 LysR family transcriptional regulator compare
PS417_06680 -2.9 -5.9 nuclease PIN compare
PS417_04365 -2.7 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_23805 -2.5 -4.8 acetolactate synthase 3 regulatory subunit compare
PS417_21480 -2.5 -2.1 23S rRNA pseudouridylate synthase compare
PS417_04380 -2.5 -1.6 ABC transporter permease compare
PS417_16490 -2.3 -1.7 cell division protein FtsK compare
PS417_27195 -2.2 -2.0 N-acetylglutamate synthase compare
PS417_02255 -2.2 -5.0 lipopolysaccharide kinase compare
PS417_23775 -2.1 -2.4 exodeoxyribonuclease V subunit beta compare
PS417_27870 -2.1 -3.1 ATP-dependent DNA helicase RecG compare
PS417_02485 -2.1 -3.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_22565 -2.0 -0.7 formyltetrahydrofolate deformylase compare
PS417_06540 -2.0 -2.4 membrane protein compare
PS417_23810 -1.9 -7.4 acetolactate synthase 3 catalytic subunit compare
PS417_10645 -1.8 -5.4 magnesium ABC transporter ATPase compare
PS417_28070 -1.7 -5.8 phosphate ABC transporter ATP-binding protein compare
PS417_02555 -1.7 -8.4 exoribonuclease R compare
PS417_01605 -1.7 -1.6 phosphoglycerate mutase compare
PS417_03560 -1.6 -1.9 GTP-binding protein compare
PS417_08135 -1.6 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_11705 -1.5 -7.5 cyclic peptide transporter compare
PS417_09210 -1.5 -1.5 TetR family transcriptional regulator compare
PS417_26775 -1.5 -7.7 thiazole synthase compare
PS417_27245 -1.5 -2.4 aminotransferase DegT compare
PS417_26805 -1.5 -1.4 cell division protein FtsE compare
PS417_02270 -1.5 -2.9 carbamoyltransferase compare
PS417_02880 -1.4 -1.8 copper chaperone compare
PS417_28080 -1.4 -8.5 phosphate ABC transporter permease compare
PS417_19675 -1.4 -4.4 chemotaxis protein CheY compare
PS417_27795 -1.4 -0.7 orotate phosphoribosyltransferase compare
PS417_24600 -1.3 -6.2 hydrogenase compare
PS417_23380 -1.3 -2.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_06895 -1.3 -2.6 DNA-binding protein compare
PS417_03830 -1.3 -7.9 protein disaggregation chaperone compare
PS417_27425 -1.3 -4.6 exopolyphosphatase compare
PS417_26605 -1.3 -1.5 malonate decarboxylase subunit beta compare
PS417_03455 -1.2 -1.7 type III secretion protein compare
PS417_14065 -1.2 -5.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_08170 -1.2 -7.5 capsular biosynthesis protein compare
PS417_03260 -1.2 -1.2 5S ribosomal RNA compare
PS417_15400 -1.2 -2.0 hypothetical protein compare
PS417_23375 -1.2 -1.8 cytochrome C oxidase compare
PS417_07940 -1.2 -1.9 hypothetical protein compare
PS417_18105 -1.2 -1.9 iron-dicitrate transporter substrate-binding subunit compare
PS417_19800 -1.2 -3.4 flagellar motor switch protein FliG compare
PS417_19850 -1.2 -7.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_02975 -1.2 -3.2 3-dehydroquinate dehydratase compare
PS417_00045 -1.2 -1.7 glycerol acyltransferase compare
PS417_02980 -1.1 -1.3 chemotaxis protein compare
PS417_00385 -1.1 -1.3 Fur family transcriptional regulator compare
PS417_07640 -1.1 -1.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_07560 -1.1 -1.3 universal stress protein UspA compare
PS417_05985 -1.1 -1.7 chemotaxis protein CheY compare
PS417_21655 -1.1 -1.3 aspartate kinase compare
PS417_19835 -1.1 -1.7 flagellar biosynthesis protein FliS compare
PS417_03465 -1.1 -1.3 type III secretion protein compare
PS417_23390 -1.1 -5.3 ubiquinol oxidase subunit II compare
PS417_07565 -1.1 -2.3 hypothetical protein compare
PS417_04390 -1.1 -2.1 toluene tolerance protein compare
PS417_17645 -1.0 -1.5 RND transporter compare
PS417_19665 -1.0 -3.3 flagellar motor protein MotD compare
PS417_13075 -1.0 -1.8 hypothetical protein compare
PS417_11945 -1.0 -2.1 hypothetical protein compare
PS417_24745 -1.0 -1.6 gamma-glutamyl phosphate reductase compare
PS417_10985 -1.0 -1.1 NADH:flavin oxidoreductase compare
PS417_22450 -1.0 -0.8 ATP-dependent DNA helicase RuvA compare
PS417_04500 -1.0 -1.4 hypothetical protein compare
PS417_25270 -1.0 -2.1 NrdR family transcriptional regulator compare
PS417_09590 -1.0 -4.6 membrane protein compare
PS417_22895 -0.9 -5.7 tyrosine recombinase XerD compare
PS417_19730 -0.9 -3.8 flagellar biosynthesis protein FliR compare
PS417_04410 -0.9 -2.0 hypothetical protein compare
PS417_23385 -0.9 -4.5 cytochrome o ubiquinol oxidase subunit I compare
PS417_24605 -0.9 -1.7 thiamine-phosphate pyrophosphorylase compare
PS417_18360 -0.9 -2.0 hypothetical protein compare
PS417_22520 -0.9 -1.2 histidine kinase compare
PS417_21090 -0.9 -0.9 hypothetical protein compare
PS417_21360 -0.9 -1.1 termination factor Rho compare
PS417_00655 -0.9 -4.1 DSBA oxidoreductase compare
PS417_06500 -0.9 -1.6 hypothetical protein compare
PS417_28075 -0.9 -3.2 phosphate ABC transporter permease compare
PS417_23910 -0.9 -2.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_19650 -0.9 -2.8 chemotaxis protein CheW compare
PS417_18310 -0.9 -0.7 hypothetical protein compare
PS417_23095 -0.9 -1.1 exodeoxyribonuclease compare
PS417_19805 -0.9 -2.7 flagellar M-ring protein FliF compare
PS417_08545 -0.9 -1.1 aromatic ring-opening dioxygenase LigB compare
PS417_09475 -0.9 -2.5 class V aminotransferase compare
PS417_19860 -0.9 -6.8 flagellar hook protein FlgL compare
PS417_23080 -0.9 -2.9 sugar ABC transporter ATPase compare
PS417_08410 -0.9 -1.3 hypothetical protein compare
PS417_13510 -0.9 -0.9 polyketide cyclase compare
PS417_04305 -0.9 -1.3 aspartate ammonia-lyase compare
PS417_28230 -0.9 -2.6 transcriptional regulator compare
PS417_00900 -0.9 -1.9 4-aminobutyrate aminotransferase compare
PS417_01620 -0.9 -1.3 preprotein translocase subunit SecB compare
PS417_01920 -0.8 -0.9 ATP-dependent protease subunit HslV compare
PS417_02225 -0.8 -1.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_26270 -0.8 -1.2 AraC family transcriptional regulator compare
PS417_23545 -0.8 -1.1 gamma-glutamyl kinase compare
PS417_25390 -0.8 -2.6 MFS transporter compare
PS417_21510 -0.8 -1.1 histidine kinase compare
PS417_19425 -0.8 -0.9 allantoicase compare
PS417_01435 -0.8 -1.3 hypothetical protein compare
PS417_06335 -0.8 -2.3 S-formylglutathione hydrolase compare
PS417_04650 -0.8 -0.4 D-alanine--D-alanine ligase compare
PS417_08580 -0.8 -3.2 histidine kinase compare
PS417_28515 -0.8 -2.1 16S rRNA methyltransferase compare
PS417_24615 -0.8 -1.1 hypothetical protein compare
PS417_05815 -0.8 -2.1 recombinase RecA compare
PS417_27605 -0.8 -4.5 hypothetical protein compare
PS417_26985 -0.8 -4.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_15370 -0.8 -2.1 kinase compare
PS417_10245 -0.8 -1.1 hypothetical protein compare
PS417_08155 -0.8 -0.7 integration host factor subunit beta compare
PS417_02395 -0.8 -1.9 DNA topoisomerase IV subunit B compare
PS417_02280 -0.8 -0.8 GlcNAc-PI de-N-acetylase compare
PS417_21425 -0.8 -1.6 4-amino-4-deoxychorismate lyase compare
PS417_14540 -0.8 -1.2 cytochrome C oxidase subunit III compare
PS417_09600 -0.8 -2.4 glycosyl transferase family 1 compare
PS417_19840 -0.8 -4.8 flagellar cap protein FliD compare
PS417_01095 -0.7 -0.8 amino acid ABC transporter ATP-binding protein compare
PS417_15770 -0.7 -1.1 pyridoxine 5'-phosphate oxidase compare
PS417_19755 -0.7 -1.5 flagellar motor switch protein FliM compare
PS417_22000 -0.7 -1.8 glutathione S-transferase compare
PS417_21990 -0.7 -1.6 LacI family transcriptional regulator compare
PS417_25825 -0.7 -1.9 sulfurtransferase compare
PS417_26040 -0.7 -3.5 malate synthase compare
PS417_12855 -0.7 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_09235 -0.7 -0.8 molecular chaperone compare
PS417_21585 -0.7 -5.5 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_11810 -0.7 -2.7 oxidoreductase compare
PS417_19515 -0.7 -2.7 histidine kinase compare
PS417_00550 -0.7 -0.8 hypothetical protein compare
PS417_28040 -0.7 -2.3 histidine kinase compare
PS417_00755 -0.7 -0.6 biofilm PGA synthesis protein PgaD compare
PS417_21595 -0.7 -1.9 flagellar biosynthesis protein FlgN compare
PS417_22700 -0.7 -1.5 RNA polymerase subunit sigma-24 compare
PS417_11940 -0.7 -4.6 TonB-dependent receptor compare
PS417_07615 -0.7 -2.8 TetR family transcriptional regulator compare
PS417_28510 -0.7 -3.1 chromosome partitioning protein compare
PS417_19795 -0.7 -5.6 flagellar assembly protein FliH compare
PS417_20055 -0.7 -1.7 cob(II)yrinic acid a,c-diamide reductase compare
PS417_02340 -0.7 -2.7 LysR family transcriptional regulator compare
PS417_22150 -0.7 -2.4 D-mannose isomerase (EC 5.3.1.7) (from data) compare
PS417_14600 -0.7 -1.4 bleomycin resistance protein compare
PS417_22085 -0.7 -1.0 aldehyde dehydrogenase compare
PS417_01565 -0.7 -3.1 imidazole glycerol phosphate synthase compare
PS417_08105 -0.7 -4.7 N-ethylammeline chlorohydrolase compare
PS417_27595 -0.7 -1.1 recombinase XerC compare
PS417_00485 -0.6 -1.1 ABC transporter permease compare
PS417_18395 -0.6 -1.9 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_19350 -0.6 -1.9 GTP cyclohydrolase compare
PS417_19430 -0.6 -1.6 ureidoglycolate hydrolase compare
PS417_01590 -0.6 -1.4 polysaccharide deacetylase compare
PS417_05535 -0.6 -1.3 Fis family transcriptional regulator compare
PS417_01850 -0.6 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_03190 -0.6 -1.6 antibiotic biosynthesis monooxygenase compare
PS417_18070 -0.6 -0.8 general secretion pathway protein GspH compare
PS417_19865 -0.6 -4.2 flagellar hook protein FlgK compare
PS417_28085 -0.6 -4.1 phosphate-binding protein compare
PS417_11715 -0.6 -1.8 chromophore maturation protein PvdO compare
PS417_22875 -0.6 -1.1 hypothetical protein compare
PS417_21135 -0.6 -2.7 Asp/Glu/hydantoin racemase compare
PS417_19735 -0.6 -2.9 flagellar biosynthesis protein FliQ compare
PS417_23370 -0.6 -2.4 protoheme IX farnesyltransferase compare
PS417_22445 -0.6 -1.0 ATP-dependent DNA helicase RuvB compare
PS417_14125 -0.6 -2.7 molybdenum ABC transporter ATP-binding protein compare
PS417_00370 -0.6 -0.6 hypothetical protein compare
PS417_19065 -0.6 -0.7 monooxygenase compare
PS417_19695 -0.6 -4.6 flagellar biosynthesis sigma factor compare
PS417_14755 -0.6 -1.1 UV damage repair endonuclease UvdE compare
PS417_11925 -0.6 -0.9 hypothetical protein compare
PS417_27705 -0.6 -1.1 amino acid dehydrogenase compare
PS417_15450 -0.6 -1.9 ABC transporter permease compare
PS417_04295 -0.6 -3.9 peptidase PmbA compare
PS417_19190 -0.6 -1.1 BolA family transcriptional regulator compare
PS417_18355 -0.6 -2.9 DNA-binding protein compare
PS417_17450 -0.6 -1.5 amino acid ABC transporter substrate-binding protein compare
PS417_24935 -0.6 -0.7 hypothetical protein compare
PS417_01550 -0.6 -3.0 cell envelope biogenesis protein AsmA compare
PS417_00355 -0.6 -1.3 metal ABC transporter permease compare
PS417_17505 -0.6 -2.5 LuxR family transcriptional regulator compare
PS417_02630 -0.6 -1.1 NAD synthetase compare
PS417_05210 -0.6 -2.4 copper oxidase compare
PS417_02865 -0.6 -1.6 peptidase compare
PS417_15465 -0.6 -1.6 carboxynorspermidine decarboxylase compare
PS417_26770 -0.6 -1.4 tRNA (guanine-N7)-methyltransferase compare
PS417_14395 -0.6 -1.7 fe2+ zn2+ uptake regulation protein compare
PS417_16320 -0.6 -1.3 protein tyrosine phosphatase compare
PS417_01195 -0.5 -1.3 RNA-binding protein S4 compare
PS417_19790 -0.5 -1.8 ATP synthase compare
PS417_16885 -0.5 -2.0 hypothetical protein compare
PS417_06455 -0.5 -1.9 Fe(II)-dependent oxygenase compare
PS417_13205 -0.5 -1.2 isochorismate-pyruvate lyase compare
PS417_00985 -0.5 -2.4 MFS transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Fraxetin across organisms