Experiment set32S489 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 3 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -5.0 -4.8 pantoate--beta-alanine ligase compare
PS417_03560 -3.8 -2.6 GTP-binding protein compare
PS417_06680 -3.7 -5.0 nuclease PIN compare
PS417_01855 -3.2 -4.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_27795 -3.1 -1.2 orotate phosphoribosyltransferase compare
PS417_03260 -3.0 -1.5 5S ribosomal RNA compare
PS417_28050 -2.8 -2.1 hypothetical protein compare
PS417_23995 -2.8 -1.5 preprotein translocase subunit SecG compare
PS417_27195 -2.7 -2.1 N-acetylglutamate synthase compare
PS417_26775 -2.2 -11.4 thiazole synthase compare
PS417_02280 -2.2 -1.7 GlcNAc-PI de-N-acetylase compare
PS417_23375 -2.2 -2.7 cytochrome C oxidase compare
PS417_23385 -2.2 -8.5 cytochrome o ubiquinol oxidase subunit I compare
PS417_08025 -2.2 -1.7 acetylornithine aminotransferase compare
PS417_10645 -2.1 -6.0 magnesium ABC transporter ATPase compare
PS417_27870 -2.1 -3.2 ATP-dependent DNA helicase RecG compare
PS417_27135 -2.0 -1.1 glutamine synthetase compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_22565 -2.0 -0.7 formyltetrahydrofolate deformylase compare
PS417_24600 -1.9 -7.9 hydrogenase compare
PS417_02510 -1.9 -3.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_22520 -1.9 -1.8 histidine kinase compare
PS417_19350 -1.9 -4.1 GTP cyclohydrolase compare
PS417_23380 -1.9 -2.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_05595 -1.8 -7.1 ornithine carbamoyltransferase compare
PS417_22570 -1.8 -1.2 H-NS histone compare
PS417_01580 -1.8 -1.5 imidazole glycerol phosphate synthase compare
PS417_23370 -1.8 -4.4 protoheme IX farnesyltransferase compare
PS417_01575 -1.7 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27585 -1.7 -2.2 diaminopimelate epimerase compare
PS417_27425 -1.7 -5.9 exopolyphosphatase compare
PS417_22450 -1.7 -1.4 ATP-dependent DNA helicase RuvA compare
PS417_01565 -1.5 -3.4 imidazole glycerol phosphate synthase compare
PS417_04420 -1.5 -7.4 histidinol dehydrogenase compare
PS417_09590 -1.5 -3.9 membrane protein compare
PS417_24605 -1.5 -3.4 thiamine-phosphate pyrophosphorylase compare
PS417_02555 -1.5 -7.7 exoribonuclease R compare
PS417_04380 -1.4 -1.0 ABC transporter permease compare
PS417_26805 -1.4 -1.4 cell division protein FtsE compare
PS417_22445 -1.3 -3.0 ATP-dependent DNA helicase RuvB compare
PS417_02255 -1.3 -2.0 lipopolysaccharide kinase compare
PS417_26900 -1.3 -1.2 L-cystine transporter tcyP compare
PS417_21480 -1.3 -1.5 23S rRNA pseudouridylate synthase compare
PS417_08155 -1.2 -1.0 integration host factor subunit beta compare
PS417_06685 -1.2 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_28080 -1.2 -9.1 phosphate ABC transporter permease compare
PS417_23390 -1.2 -5.4 ubiquinol oxidase subunit II compare
PS417_28070 -1.2 -5.9 phosphate ABC transporter ATP-binding protein compare
PS417_01850 -1.2 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_07170 -1.2 -3.0 hypothetical protein compare
PS417_19425 -1.1 -1.2 allantoicase compare
PS417_02975 -1.1 -3.2 3-dehydroquinate dehydratase compare
PS417_03830 -1.1 -5.7 protein disaggregation chaperone compare
PS417_02880 -1.1 -1.5 copper chaperone compare
PS417_08410 -1.1 -1.6 hypothetical protein compare
PS417_01270 -1.1 -2.1 iron ABC transporter substrate-binding protein compare
PS417_26605 -1.1 -1.2 malonate decarboxylase subunit beta compare
PS417_05160 -1.1 -0.8 DNA polymerase III subunit chi compare
PS417_07565 -1.1 -2.4 hypothetical protein compare
PS417_05820 -1.1 -2.4 recombinase RecX compare
PS417_27835 -1.1 -5.4 endoribonuclease compare
PS417_24705 -1.1 -2.6 D-alanyl-D-alanine carboxypeptidase compare
PS417_02225 -1.1 -2.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_16560 -1.1 -2.1 GNAT family acetyltransferase compare
PS417_08580 -1.0 -4.5 histidine kinase compare
PS417_09600 -1.0 -4.0 glycosyl transferase family 1 compare
PS417_13510 -1.0 -1.1 polyketide cyclase compare
PS417_09830 -1.0 -4.9 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_12585 -1.0 -5.0 acriflavine resistance protein B compare
PS417_04415 -1.0 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01115 -1.0 -1.3 serine acetyltransferase compare
PS417_26420 -1.0 -1.8 hypothetical protein compare
PS417_24745 -1.0 -1.9 gamma-glutamyl phosphate reductase compare
PS417_00370 -1.0 -1.0 hypothetical protein compare
PS417_24935 -1.0 -1.1 hypothetical protein compare
PS417_08045 -1.0 -2.4 uracil permease compare
PS417_22535 -0.9 -3.1 ornithine acetyltransferase compare
PS417_22205 -0.9 -4.5 potassium transporter TrkH compare
PS417_24675 -0.9 -1.6 lipoyl synthase compare
PS417_23950 -0.9 -1.2 polynucleotide phosphorylase/polyadenylase compare
PS417_15100 -0.9 -1.7 BatB protein compare
PS417_19705 -0.9 -1.8 flagellar biosynthesis regulator FlhF compare
PS417_01715 -0.9 -1.1 hypothetical protein compare
PS417_19720 -0.9 -1.5 DNA-binding protein compare
PS417_02160 -0.9 -1.2 hypothetical protein compare
PS417_00660 -0.9 -2.5 DSBA oxidoreductase compare
PS417_07875 -0.8 -1.0 hypothetical protein compare
PS417_01570 -0.8 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_26995 -0.8 -5.1 phosphoserine phosphatase compare
PS417_00650 -0.8 -0.8 LysR family transcriptional regulator compare
PS417_02950 -0.8 -1.8 tRNA-dihydrouridine synthase B compare
PS417_07710 -0.8 -1.9 membrane protein compare
PS417_00385 -0.8 -1.1 Fur family transcriptional regulator compare
PS417_21655 -0.8 -1.0 aspartate kinase compare
PS417_06100 -0.8 -1.6 SAM-dependent methyltransferase compare
PS417_23810 -0.8 -4.9 acetolactate synthase 3 catalytic subunit compare
PS417_07615 -0.8 -3.2 TetR family transcriptional regulator compare
PS417_27605 -0.8 -3.3 hypothetical protein compare
PS417_22935 -0.8 -1.9 hypothetical protein compare
PS417_23825 -0.8 -3.0 penicillin-binding protein compare
PS417_12520 -0.8 -1.7 hypothetical protein compare
PS417_14065 -0.8 -3.1 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_22400 -0.8 -4.9 7-cyano-7-deazaguanine synthase compare
PS417_00080 -0.8 -4.3 potassium transporter peripheral membrane component compare
PS417_27245 -0.8 -1.5 aminotransferase DegT compare
PS417_17795 -0.8 -1.9 ABC transporter permease compare
PS417_15135 -0.8 -1.5 hypothetical protein compare
PS417_27940 -0.8 -1.8 type VI secretion protein compare
PS417_06205 -0.7 -4.5 methionine aminopeptidase compare
PS417_28075 -0.7 -4.3 phosphate ABC transporter permease compare
PS417_06200 -0.7 -3.1 protein-PII uridylyltransferase compare
PS417_09585 -0.7 -4.1 acetyltransferase compare
PS417_08540 -0.7 -1.6 RNA helicase compare
PS417_12005 -0.7 -2.6 hypothetical protein compare
PS417_20855 -0.7 -0.9 hypothetical protein compare
PS417_07120 -0.7 -1.9 RNA polymerase sigma-H factor compare
PS417_24225 -0.7 -1.6 hypothetical protein compare
PS417_09595 -0.7 -3.4 membrane protein compare
PS417_22895 -0.7 -4.3 tyrosine recombinase XerD compare
PS417_23135 -0.7 -1.1 GTP-binding protein compare
PS417_01955 -0.7 -4.7 peptidase compare
PS417_09210 -0.7 -1.2 TetR family transcriptional regulator compare
PS417_28085 -0.7 -5.0 phosphate-binding protein compare
PS417_03815 -0.7 -2.0 DNA transporter compare
PS417_22690 -0.7 -1.8 phosphogluconate dehydratase compare
PS417_10995 -0.7 -2.0 GntR family transcriptional regulator compare
PS417_07695 -0.7 -2.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_13855 -0.7 -1.1 acetyl-CoA acetyltransferase compare
PS417_02485 -0.7 -1.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_11925 -0.7 -1.8 hypothetical protein compare
PS417_27075 -0.7 -1.5 thiol-disulfide isomerase compare
PS417_18105 -0.7 -1.2 iron-dicitrate transporter substrate-binding subunit compare
PS417_04390 -0.7 -1.5 toluene tolerance protein compare
PS417_20140 -0.7 -2.0 nucleoprotein/polynucleotide-associated enzyme compare
PS417_05850 -0.7 -2.4 LysR family transcriptional regulator compare
PS417_08990 -0.7 -2.7 ABC transporter substrate-binding protein compare
PS417_25155 -0.7 -0.9 hypothetical protein compare
PS417_03000 -0.6 -2.8 translation initiation factor Sui1 compare
PS417_15030 -0.6 -1.1 short-chain dehydrogenase compare
PS417_22620 -0.6 -2.4 pyruvate kinase compare
PS417_20705 -0.6 -1.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_28220 -0.6 -1.5 LysR family transcriptional regulator compare
PS417_10245 -0.6 -1.0 hypothetical protein compare
PS417_02870 -0.6 -3.6 TonB-dependent receptor compare
PS417_11705 -0.6 -3.2 cyclic peptide transporter compare
PS417_16555 -0.6 -0.8 cupin compare
PS417_19955 -0.6 -0.9 hypothetical protein compare
PS417_06145 -0.6 -0.8 hypothetical protein compare
PS417_22530 -0.6 -2.8 hypothetical protein compare
PS417_15780 -0.6 -2.0 membrane protein compare
PS417_04585 -0.6 -0.8 hypothetical protein compare
PS417_00185 -0.6 -1.9 tryptophan synthase subunit beta compare
PS417_08680 -0.6 -1.5 flagellar biosynthesis protein FlhB compare
PS417_23775 -0.6 -0.7 exodeoxyribonuclease V subunit beta compare
PS417_12635 -0.6 -1.4 alkanesulfonate monooxygenase compare
PS417_27705 -0.6 -1.1 amino acid dehydrogenase compare
PS417_18355 -0.6 -3.1 DNA-binding protein compare
PS417_01185 -0.6 -3.7 ribosomal protein S6 modification protein compare
PS417_04170 -0.6 -1.7 stringent starvation protein A compare
PS417_07700 -0.6 -0.9 chromosome partitioning protein ParA compare
PS417_00375 -0.6 -1.5 membrane protein compare
PS417_12355 -0.6 -1.5 magnesium chelatase compare
PS417_18595 -0.6 -1.5 3-isopropylmalate dehydratase compare
PS417_27300 -0.6 -0.6 cell division protein ZapA compare
PS417_25710 -0.6 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_22210 -0.6 -0.7 AraC family transcriptional regulator compare
PS417_13165 -0.6 -1.3 peroxidase compare
PS417_04595 -0.6 -1.2 cell division protein MraZ compare
PS417_01825 -0.6 -1.8 chemotaxis protein compare
PS417_21915 -0.6 -1.6 LysR family transcriptional regulator compare
PS417_22405 -0.6 -4.0 7-carboxy-7-deazaguanine synthase compare
PS417_12990 -0.6 -2.0 nucleoside hydrolase compare
PS417_10985 -0.6 -0.8 NADH:flavin oxidoreductase compare
PS417_27295 -0.6 -2.0 hypothetical protein compare
PS417_09625 -0.6 -2.1 sugar ABC transporter substrate-binding protein compare
PS417_02780 -0.6 -2.4 DNA-binding protein compare
PS417_01710 -0.6 -2.8 histidine utilization repressor compare
PS417_12595 -0.6 -1.3 transcriptional regulator compare
PS417_02460 -0.6 -3.2 epoxyqueuosine reductase compare
PS417_16490 -0.6 -0.5 cell division protein FtsK compare
PS417_09330 -0.6 -1.6 NAD(P)H-quinone oxidoreductase compare
PS417_06600 -0.6 -0.6 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_04535 -0.6 -2.1 lysine transporter LysE compare
PS417_11945 -0.6 -1.4 hypothetical protein compare
PS417_05500 -0.6 -1.9 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_23250 -0.6 -2.2 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_10675 -0.6 -0.8 TetR family transcriptional regulator compare
PS417_07620 -0.6 -1.0 beta-hexosaminidase compare
PS417_08930 -0.6 -1.8 hypothetical protein compare
PS417_14075 -0.6 -1.1 hypothetical protein compare
PS417_18425 -0.6 -0.9 sporulation protein compare
PS417_03915 -0.6 -1.1 tRNA-Thr compare
PS417_02270 -0.6 -1.4 carbamoyltransferase compare
PS417_15800 -0.6 -3.2 photosynthetic protein synthase I compare
PS417_23900 -0.5 -3.1 poly(A) polymerase compare
PS417_06770 -0.5 -2.2 multidrug transporter compare
PS417_25915 -0.5 -1.7 carbon-nitrogen hydrolase compare
PS417_18545 -0.5 -1.7 cell division protein compare
PS417_06530 -0.5 -1.2 membrane protein compare
PS417_08685 -0.5 -0.7 flagellar hook-length control protein FliK compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms