Experiment set32S488 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 2 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -4.9 -4.7 pantoate--beta-alanine ligase compare
PS417_06680 -3.4 -5.1 nuclease PIN compare
PS417_27870 -2.9 -2.8 ATP-dependent DNA helicase RecG compare
PS417_01915 -2.7 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_28050 -2.6 -2.1 hypothetical protein compare
PS417_04365 -2.6 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_04380 -2.4 -1.6 ABC transporter permease compare
PS417_21480 -2.3 -2.0 23S rRNA pseudouridylate synthase compare
PS417_09245 -2.3 -2.1 recombinase RdgC compare
PS417_22520 -2.2 -1.7 histidine kinase compare
PS417_16490 -2.2 -1.7 cell division protein FtsK compare
PS417_21430 -2.0 -1.9 3-oxoacyl-ACP synthase compare
PS417_27425 -2.0 -6.6 exopolyphosphatase compare
PS417_08125 -1.9 -0.7 prephenate dehydratase compare
PS417_22565 -1.9 -0.7 formyltetrahydrofolate deformylase compare
PS417_06375 -1.9 -0.7 deoxycytidine triphosphate deaminase compare
PS417_23375 -1.9 -2.4 cytochrome C oxidase compare
PS417_27195 -1.8 -1.5 N-acetylglutamate synthase compare
PS417_00550 -1.7 -1.5 hypothetical protein compare
PS417_09590 -1.7 -4.1 membrane protein compare
PS417_28070 -1.7 -6.1 phosphate ABC transporter ATP-binding protein compare
PS417_02555 -1.6 -8.6 exoribonuclease R compare
PS417_10645 -1.6 -4.7 magnesium ABC transporter ATPase compare
PS417_04385 -1.6 -2.2 organic solvent ABC transporter substrate-binding protein compare
PS417_19350 -1.6 -4.2 GTP cyclohydrolase compare
PS417_16555 -1.6 -1.9 cupin compare
PS417_01855 -1.6 -3.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_23805 -1.6 -4.4 acetolactate synthase 3 regulatory subunit compare
PS417_06730 -1.5 -1.8 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_01605 -1.5 -1.4 phosphoglycerate mutase compare
PS417_02880 -1.5 -1.8 copper chaperone compare
PS417_03560 -1.5 -1.7 GTP-binding protein compare
PS417_24745 -1.5 -2.6 gamma-glutamyl phosphate reductase compare
PS417_01145 -1.4 -1.2 taurine transporter ATP-binding subunit compare
PS417_26775 -1.4 -7.2 thiazole synthase compare
PS417_24600 -1.4 -6.0 hydrogenase compare
PS417_00370 -1.3 -1.2 hypothetical protein compare
PS417_02510 -1.3 -4.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_05975 -1.3 -0.9 chemotaxis protein CheW compare
PS417_09600 -1.3 -4.3 glycosyl transferase family 1 compare
PS417_07710 -1.2 -2.4 membrane protein compare
PS417_04390 -1.2 -2.4 toluene tolerance protein compare
PS417_21655 -1.2 -1.1 aspartate kinase compare
PS417_05815 -1.2 -3.9 recombinase RecA compare
PS417_02975 -1.2 -3.9 3-dehydroquinate dehydratase compare
PS417_02485 -1.2 -2.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_02990 -1.2 -3.0 hypothetical protein compare
PS417_23810 -1.2 -6.3 acetolactate synthase 3 catalytic subunit compare
PS417_16520 -1.2 -2.3 cold-shock protein compare
PS417_14045 -1.2 -3.2 alkyl hydroperoxide reductase compare
PS417_09625 -1.1 -2.0 sugar ABC transporter substrate-binding protein compare
PS417_22450 -1.1 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_06095 -1.1 -1.9 energy transducer TonB compare
PS417_02255 -1.1 -1.9 lipopolysaccharide kinase compare
PS417_10675 -1.1 -1.3 TetR family transcriptional regulator compare
PS417_07565 -1.1 -1.3 hypothetical protein compare
PS417_23370 -1.1 -2.7 protoheme IX farnesyltransferase compare
PS417_08540 -1.1 -2.0 RNA helicase compare
PS417_27865 -1.1 -2.4 LysR family transcriptional regulator compare
PS417_06205 -1.1 -5.8 methionine aminopeptidase compare
PS417_22445 -1.1 -1.9 ATP-dependent DNA helicase RuvB compare
PS417_23135 -1.0 -1.6 GTP-binding protein compare
PS417_28080 -1.0 -7.6 phosphate ABC transporter permease compare
PS417_24605 -1.0 -2.6 thiamine-phosphate pyrophosphorylase compare
PS417_23545 -1.0 -1.3 gamma-glutamyl kinase compare
PS417_03830 -1.0 -6.3 protein disaggregation chaperone compare
PS417_01565 -1.0 -4.1 imidazole glycerol phosphate synthase compare
PS417_06710 -1.0 -1.7 beta-ketoadipyl CoA thiolase compare
PS417_08620 -1.0 -1.1 hypothetical protein compare
PS417_02370 -1.0 -1.8 ADP-ribose pyrophosphatase compare
PS417_08130 -0.9 -1.8 aspartate aminotransferase compare
PS417_01560 -0.9 -1.3 imidazoleglycerol-phosphate dehydratase compare
PS417_22895 -0.9 -4.0 tyrosine recombinase XerD compare
PS417_08580 -0.9 -3.0 histidine kinase compare
PS417_13510 -0.9 -1.0 polyketide cyclase compare
PS417_26730 -0.9 -0.6 pyrroline-5-carboxylate reductase compare
PS417_26605 -0.9 -0.7 malonate decarboxylase subunit beta compare
PS417_05595 -0.9 -5.4 ornithine carbamoyltransferase compare
PS417_27665 -0.9 -2.3 diguanylate cyclase compare
PS417_26850 -0.9 -0.8 twin-arginine translocation pathway signal protein compare
PS417_27290 -0.9 -1.2 hypothetical protein compare
PS417_19505 -0.9 -2.2 2,4-diaminobutyrate 4-aminotransferase compare
PS417_22935 -0.9 -2.1 hypothetical protein compare
PS417_21625 -0.9 -0.9 DNA-binding protein compare
PS417_22570 -0.8 -0.7 H-NS histone compare
PS417_07895 -0.8 -3.5 hypothetical protein compare
PS417_21320 -0.8 -1.5 transcriptional regulator compare
PS417_07140 -0.8 -1.4 peptidase M48 compare
PS417_06685 -0.8 -0.8 beta-ketoadipyl CoA thiolase compare
PS417_02870 -0.8 -4.0 TonB-dependent receptor compare
PS417_23390 -0.8 -3.8 ubiquinol oxidase subunit II compare
PS417_19755 -0.8 -1.6 flagellar motor switch protein FliM compare
PS417_09595 -0.8 -3.2 membrane protein compare
PS417_23385 -0.8 -4.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_12535 -0.8 -2.0 nitrilase compare
PS417_16475 -0.8 -1.8 camphor resistance protein CrcB compare
PS417_04440 -0.8 -1.9 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_00510 -0.8 -1.1 membrane protein compare
PS417_22535 -0.8 -3.2 ornithine acetyltransferase compare
PS417_27075 -0.8 -2.0 thiol-disulfide isomerase compare
PS417_14980 -0.8 -1.0 universal stress protein UspA compare
PS417_07305 -0.8 -1.2 3-beta hydroxysteroid dehydrogenase compare
PS417_00375 -0.8 -1.8 membrane protein compare
PS417_04420 -0.7 -4.2 histidinol dehydrogenase compare
PS417_13140 -0.7 -0.9 oxidoreductase compare
PS417_26420 -0.7 -1.3 hypothetical protein compare
PS417_02575 -0.7 -1.6 membrane protein compare
PS417_23380 -0.7 -1.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_22620 -0.7 -1.8 pyruvate kinase compare
PS417_20985 -0.7 -0.5 porin compare
PS417_04410 -0.7 -1.6 hypothetical protein compare
PS417_22575 -0.7 -3.4 exonuclease I compare
PS417_01945 -0.7 -1.2 nuclease compare
PS417_16195 -0.7 -0.9 AraC family transcriptional regulator compare
PS417_04305 -0.7 -1.1 aspartate ammonia-lyase compare
PS417_23775 -0.7 -0.8 exodeoxyribonuclease V subunit beta compare
PS417_05650 -0.7 -2.1 leucyl-tRNA synthetase compare
PS417_21425 -0.7 -1.4 4-amino-4-deoxychorismate lyase compare
PS417_23995 -0.7 -0.6 preprotein translocase subunit SecG compare
PS417_02395 -0.7 -1.9 DNA topoisomerase IV subunit B compare
PS417_01575 -0.6 -1.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_14655 -0.6 -0.9 lysine transporter LysE compare
PS417_12035 -0.6 -1.5 dihydroxyacetone kinase compare
PS417_11825 -0.6 -1.8 transcriptional regulator compare
PS417_27315 -0.6 -0.9 hypothetical protein compare
PS417_07615 -0.6 -2.5 TetR family transcriptional regulator compare
PS417_27835 -0.6 -2.0 endoribonuclease compare
PS417_03300 -0.6 -1.6 alanine acetyltransferase compare
PS417_26390 -0.6 -1.0 acyltransferase compare
PS417_11755 -0.6 -1.8 diacetyl reductase compare
PS417_15540 -0.6 -0.9 NUDIX hydrolase compare
PS417_03935 -0.6 -2.0 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_15805 -0.6 -1.2 transporter compare
PS417_27605 -0.6 -3.6 hypothetical protein compare
PS417_09615 -0.6 -1.9 glycosyl transferase family 1 compare
PS417_07695 -0.6 -2.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_24895 -0.6 -1.1 hypothetical protein compare
PS417_15975 -0.6 -1.5 glutamate carboxypeptidase compare
PS417_23080 -0.6 -2.0 sugar ABC transporter ATPase compare
PS417_01185 -0.6 -3.3 ribosomal protein S6 modification protein compare
PS417_28075 -0.6 -2.7 phosphate ABC transporter permease compare
PS417_27610 -0.6 -2.4 hypothetical protein compare
PS417_22150 -0.6 -1.5 D-mannose isomerase (EC 5.3.1.7) (from data) compare
PS417_25390 -0.6 -2.1 MFS transporter compare
PS417_03385 -0.6 -0.9 flavin reductase compare
PS417_05985 -0.6 -1.1 chemotaxis protein CheY compare
PS417_27595 -0.6 -1.3 recombinase XerC compare
PS417_02885 -0.6 -1.6 hypothetical protein compare
PS417_27705 -0.6 -1.0 amino acid dehydrogenase compare
PS417_12655 -0.6 -1.8 methionine aminopeptidase compare
PS417_02865 -0.6 -1.6 peptidase compare
PS417_27715 -0.6 -1.6 Fe-S oxidoreductase compare
PS417_20340 -0.6 -1.5 hypothetical protein compare
PS417_05325 -0.6 -1.1 fimbrial protein compare
PS417_26365 -0.6 -1.1 EmrB/QacA subfamily drug resistance transporter compare
PS417_01620 -0.6 -0.9 preprotein translocase subunit SecB compare
PS417_08410 -0.6 -1.0 hypothetical protein compare
PS417_02780 -0.6 -2.8 DNA-binding protein compare
PS417_24370 -0.6 -0.6 (2Fe-2S)-binding protein compare
PS417_24675 -0.6 -1.5 lipoyl synthase compare
PS417_09585 -0.6 -3.5 acetyltransferase compare
PS417_02365 -0.6 -1.8 hypothetical protein compare
PS417_19850 -0.6 -3.1 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_25720 -0.5 -3.9 anthranilate synthase component II compare
PS417_08680 -0.5 -0.9 flagellar biosynthesis protein FlhB compare
PS417_00900 -0.5 -1.0 4-aminobutyrate aminotransferase compare
PS417_01095 -0.5 -0.6 amino acid ABC transporter ATP-binding protein compare
PS417_00045 -0.5 -0.9 glycerol acyltransferase compare
PS417_14140 -0.5 -1.0 membrane protein compare
PS417_09235 -0.5 -0.6 molecular chaperone compare
PS417_07470 -0.5 -0.7 hypothetical protein compare
PS417_15030 -0.5 -0.9 short-chain dehydrogenase compare
PS417_19425 -0.5 -0.7 allantoicase compare
PS417_12855 -0.5 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_12805 -0.5 -3.8 glycogen branching protein compare
PS417_11715 -0.5 -1.9 chromophore maturation protein PvdO compare
PS417_02950 -0.5 -2.3 tRNA-dihydrouridine synthase B compare
PS417_26175 -0.5 -0.5 sarcosine oxidase subunit gamma compare
PS417_18425 -0.5 -0.8 sporulation protein compare
PS417_24650 -0.5 -0.9 membrane protein compare
PS417_07815 -0.5 -1.8 hypothetical protein compare
PS417_02355 -0.5 -3.0 thiamine biosynthesis protein ThiC compare
PS417_10040 -0.5 -0.7 MFS transporter compare
PS417_06445 -0.5 -0.9 iron-siderophore ABC transporter permease compare
PS417_24935 -0.5 -0.6 hypothetical protein compare
PS417_00075 -0.5 -1.8 hypothetical protein compare
PS417_14245 -0.5 -1.6 hypothetical protein compare
PS417_00345 -0.5 -1.1 copper-binding protein compare
PS417_07175 -0.5 -1.7 beta-lactamase compare
PS417_08650 -0.5 -1.7 transcriptional regulator compare
PS417_19740 -0.5 -2.7 flagellar biosynthesis protein flip compare
PS417_06200 -0.5 -2.4 protein-PII uridylyltransferase compare
PS417_24310 -0.5 -1.5 ankyrin compare
PS417_06355 -0.5 -1.8 protein-L-isoaspartate O-methyltransferase compare
PS417_28510 -0.5 -2.3 chromosome partitioning protein compare
PS417_11705 -0.5 -2.6 cyclic peptide transporter compare
PS417_27585 -0.5 -0.7 diaminopimelate epimerase compare
PS417_05210 -0.5 -2.5 copper oxidase compare
PS417_26990 -0.5 -0.4 RNA pyrophosphohydrolase compare
PS417_04270 -0.5 -2.5 ribonuclease G compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms