Experiment set32S487 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 1 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_22450 -3.7 -2.4 ATP-dependent DNA helicase RuvA compare
PS417_13510 -3.5 -1.9 polyketide cyclase compare
PS417_28050 -3.5 -2.4 hypothetical protein compare
PS417_27795 -3.2 -1.2 orotate phosphoribosyltransferase compare
PS417_23915 -3.1 -4.9 pantoate--beta-alanine ligase compare
PS417_06680 -2.7 -6.0 nuclease PIN compare
PS417_08155 -2.6 -2.2 integration host factor subunit beta compare
PS417_26730 -2.2 -1.2 pyrroline-5-carboxylate reductase compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_08125 -2.0 -0.7 prephenate dehydratase compare
PS417_23950 -2.0 -1.6 polynucleotide phosphorylase/polyadenylase compare
PS417_24600 -1.9 -8.6 hydrogenase compare
PS417_10645 -1.9 -5.4 magnesium ABC transporter ATPase compare
PS417_02555 -1.9 -10.2 exoribonuclease R compare
PS417_03560 -1.9 -1.8 GTP-binding protein compare
PS417_23375 -1.8 -2.5 cytochrome C oxidase compare
PS417_04365 -1.7 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_19350 -1.7 -3.8 GTP cyclohydrolase compare
PS417_26775 -1.7 -7.8 thiazole synthase compare
PS417_02485 -1.6 -2.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27425 -1.6 -5.5 exopolyphosphatase compare
PS417_28070 -1.5 -7.0 phosphate ABC transporter ATP-binding protein compare
PS417_23810 -1.5 -6.5 acetolactate synthase 3 catalytic subunit compare
PS417_09590 -1.5 -3.9 membrane protein compare
PS417_08130 -1.4 -2.5 aspartate aminotransferase compare
PS417_04375 -1.4 -1.0 ABC transporter ATP-binding protein compare
PS417_23805 -1.4 -3.5 acetolactate synthase 3 regulatory subunit compare
PS417_21480 -1.4 -1.2 23S rRNA pseudouridylate synthase compare
PS417_09210 -1.4 -1.4 TetR family transcriptional regulator compare
PS417_24935 -1.4 -1.3 hypothetical protein compare
PS417_02255 -1.3 -1.9 lipopolysaccharide kinase compare
PS417_27195 -1.3 -1.5 N-acetylglutamate synthase compare
PS417_27815 -1.3 -1.9 hypothetical protein compare
PS417_27865 -1.3 -2.1 LysR family transcriptional regulator compare
PS417_23580 -1.3 -1.8 peptidylprolyl isomerase compare
PS417_00385 -1.3 -1.4 Fur family transcriptional regulator compare
PS417_03830 -1.2 -8.4 protein disaggregation chaperone compare
PS417_27640 -1.2 -1.4 TetR family transcriptional regulator compare
PS417_19835 -1.2 -2.1 flagellar biosynthesis protein FliS compare
PS417_27870 -1.2 -1.8 ATP-dependent DNA helicase RecG compare
PS417_02280 -1.2 -1.5 GlcNAc-PI de-N-acetylase compare
PS417_28515 -1.2 -3.2 16S rRNA methyltransferase compare
PS417_03260 -1.2 -1.2 5S ribosomal RNA compare
PS417_11705 -1.1 -5.4 cyclic peptide transporter compare
PS417_07615 -1.1 -4.6 TetR family transcriptional regulator compare
PS417_21595 -1.1 -3.8 flagellar biosynthesis protein FlgN compare
PS417_25270 -1.1 -2.9 NrdR family transcriptional regulator compare
PS417_22620 -1.1 -2.5 pyruvate kinase compare
PS417_24605 -1.0 -1.8 thiamine-phosphate pyrophosphorylase compare
PS417_00045 -1.0 -1.5 glycerol acyltransferase compare
PS417_04080 -1.0 -2.2 peptide ABC transporter substrate-binding protein compare
PS417_11725 -1.0 -2.0 peptidase M19 compare
PS417_02270 -1.0 -2.0 carbamoyltransferase compare
PS417_08335 -1.0 -1.6 hypothetical protein compare
PS417_17840 -1.0 -1.6 betaine-aldehyde dehydrogenase compare
PS417_23385 -1.0 -5.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_14655 -1.0 -1.3 lysine transporter LysE compare
PS417_23775 -1.0 -1.4 exodeoxyribonuclease V subunit beta compare
PS417_11400 -1.0 -1.7 phosphoglycerate mutase compare
PS417_10985 -1.0 -1.1 NADH:flavin oxidoreductase compare
PS417_01270 -1.0 -2.1 iron ABC transporter substrate-binding protein compare
PS417_19850 -1.0 -5.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_22570 -1.0 -0.8 H-NS histone compare
PS417_26420 -1.0 -1.8 hypothetical protein compare
PS417_22445 -0.9 -1.6 ATP-dependent DNA helicase RuvB compare
PS417_28080 -0.9 -6.1 phosphate ABC transporter permease compare
PS417_07560 -0.9 -1.4 universal stress protein UspA compare
PS417_06620 -0.9 -2.3 hypothetical protein compare
PS417_02110 -0.9 -1.7 acyl carrier protein compare
PS417_09600 -0.9 -3.3 glycosyl transferase family 1 compare
PS417_21630 -0.9 -1.7 magnesium transporter compare
PS417_04380 -0.9 -0.7 ABC transporter permease compare
PS417_09615 -0.9 -2.5 glycosyl transferase family 1 compare
PS417_26770 -0.9 -1.1 tRNA (guanine-N7)-methyltransferase compare
PS417_25315 -0.9 -3.1 membrane protein compare
PS417_22895 -0.9 -4.0 tyrosine recombinase XerD compare
PS417_05815 -0.9 -2.2 recombinase RecA compare
PS417_23910 -0.9 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_22840 -0.9 -1.5 tRNA-Met compare
PS417_03300 -0.9 -2.1 alanine acetyltransferase compare
PS417_23995 -0.9 -0.8 preprotein translocase subunit SecG compare
PS417_05695 -0.8 -2.8 transcriptional regulator compare
PS417_08685 -0.8 -1.4 flagellar hook-length control protein FliK compare
PS417_13165 -0.8 -0.9 peroxidase compare
PS417_23370 -0.8 -2.3 protoheme IX farnesyltransferase compare
PS417_23390 -0.8 -4.7 ubiquinol oxidase subunit II compare
PS417_22575 -0.8 -3.3 exonuclease I compare
PS417_02370 -0.8 -1.7 ADP-ribose pyrophosphatase compare
PS417_27605 -0.8 -3.4 hypothetical protein compare
PS417_19665 -0.8 -2.8 flagellar motor protein MotD compare
PS417_09625 -0.8 -2.1 sugar ABC transporter substrate-binding protein compare
PS417_06205 -0.8 -4.3 methionine aminopeptidase compare
PS417_02880 -0.8 -1.1 copper chaperone compare
PS417_12900 -0.8 -3.2 Fe-S protein compare
PS417_21625 -0.8 -0.9 DNA-binding protein compare
PS417_27435 -0.8 -3.3 polyphosphate kinase compare
PS417_04420 -0.8 -4.7 histidinol dehydrogenase compare
PS417_08135 -0.8 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08170 -0.8 -4.8 capsular biosynthesis protein compare
PS417_16560 -0.8 -2.3 GNAT family acetyltransferase compare
PS417_19425 -0.8 -0.9 allantoicase compare
PS417_11585 -0.8 -0.9 LuxR family transcriptional regulator compare
PS417_20985 -0.8 -0.5 porin compare
PS417_19650 -0.8 -3.1 chemotaxis protein CheW compare
PS417_10025 -0.8 -1.4 bacteriophage lambda NinG family protein compare
PS417_03465 -0.8 -1.3 type III secretion protein compare
PS417_04270 -0.8 -4.2 ribonuclease G compare
PS417_14980 -0.8 -1.0 universal stress protein UspA compare
PS417_24310 -0.7 -2.0 ankyrin compare
PS417_01575 -0.7 -1.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_05985 -0.7 -2.0 chemotaxis protein CheY compare
PS417_27705 -0.7 -1.3 amino acid dehydrogenase compare
PS417_01850 -0.7 -2.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_19790 -0.7 -3.0 ATP synthase compare
PS417_10390 -0.7 -2.0 RNA polymerase subunit sigma24 compare
PS417_19755 -0.7 -1.5 flagellar motor switch protein FliM compare
PS417_13730 -0.7 -2.0 hypothetical protein compare
PS417_18710 -0.7 -3.5 hypothetical protein compare
PS417_09595 -0.7 -3.1 membrane protein compare
PS417_25730 -0.7 -3.5 phosphoglycolate phosphatase compare
PS417_27105 -0.7 -3.0 spermidine/putrescine ABC transporter permease compare
PS417_07640 -0.7 -1.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_18425 -0.7 -1.1 sporulation protein compare
PS417_19675 -0.7 -2.3 chemotaxis protein CheY compare
PS417_08545 -0.7 -1.2 aromatic ring-opening dioxygenase LigB compare
PS417_19860 -0.7 -5.4 flagellar hook protein FlgL compare
PS417_09245 -0.7 -1.3 recombinase RdgC compare
PS417_01855 -0.7 -1.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_02510 -0.7 -3.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_02975 -0.7 -1.5 3-dehydroquinate dehydratase compare
PS417_23160 -0.7 -1.4 50S rRNA methyltransferase compare
PS417_16195 -0.7 -0.9 AraC family transcriptional regulator compare
PS417_01565 -0.7 -3.1 imidazole glycerol phosphate synthase compare
PS417_16715 -0.7 -1.3 DoxX family protein compare
PS417_03380 -0.7 -1.0 hypothetical protein compare
PS417_08650 -0.7 -1.1 transcriptional regulator compare
PS417_25985 -0.7 -1.5 dethiobiotin synthetase compare
PS417_09585 -0.7 -3.0 acetyltransferase compare
PS417_05615 -0.7 -3.8 (2Fe-2S)-binding protein compare
PS417_00085 -0.7 -1.7 16S rRNA methyltransferase compare
PS417_10480 -0.7 -1.2 glutathione S-transferase compare
PS417_16760 -0.7 -2.0 membrane protein compare
PS417_04500 -0.7 -1.0 hypothetical protein compare
PS417_23900 -0.6 -3.6 poly(A) polymerase compare
PS417_17560 -0.6 -2.1 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_02870 -0.6 -3.2 TonB-dependent receptor compare
PS417_04915 -0.6 -0.9 glutamine ABC transporter ATP-binding protein compare
PS417_26335 -0.6 -1.7 BetI family transcriptional regulator compare
PS417_19730 -0.6 -2.8 flagellar biosynthesis protein FliR compare
PS417_13715 -0.6 -2.1 hypothetical protein compare
PS417_15450 -0.6 -3.1 ABC transporter permease compare
PS417_11440 -0.6 -1.2 hypothetical protein compare
PS417_06245 -0.6 -0.9 zinc metallopeptidase RseP compare
PS417_14200 -0.6 -1.8 hypothetical protein compare
PS417_00180 -0.6 -1.1 tryptophan synthase subunit alpha compare
PS417_01965 -0.6 -1.2 fimbriae biosynthesis protein compare
PS417_02210 -0.6 -2.8 diguanylate cyclase compare
PS417_18760 -0.6 -2.1 hypothetical protein compare
PS417_06895 -0.6 -1.7 DNA-binding protein compare
PS417_04440 -0.6 -1.2 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_02780 -0.6 -2.7 DNA-binding protein compare
PS417_04835 -0.6 -1.3 hemolysin D compare
PS417_15540 -0.6 -1.2 NUDIX hydrolase compare
PS417_06600 -0.6 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_11180 -0.6 -1.8 TetR family transcriptional regulator compare
PS417_21870 -0.6 -2.0 glycerophosphodiester phosphodiesterase compare
PS417_15035 -0.6 -1.1 alkylhydroperoxidase compare
PS417_23545 -0.6 -0.7 gamma-glutamyl kinase compare
PS417_15880 -0.6 -2.0 GNAT family acetyltransferase compare
PS417_02670 -0.6 -1.5 ABC transporter compare
PS417_17390 -0.6 -2.3 DSBA oxidoreductase compare
PS417_19800 -0.6 -2.1 flagellar motor switch protein FliG compare
PS417_11720 -0.6 -1.8 class V aminotransferase compare
PS417_15910 -0.6 -2.5 lysine transporter LysE compare
PS417_19795 -0.6 -4.7 flagellar assembly protein FliH compare
PS417_04390 -0.6 -1.3 toluene tolerance protein compare
PS417_20880 -0.6 -1.4 GntR family transcriptional regulator compare
PS417_19740 -0.6 -4.3 flagellar biosynthesis protein flip compare
PS417_00185 -0.6 -1.5 tryptophan synthase subunit beta compare
PS417_27770 -0.6 -1.3 hypothetical protein compare
PS417_15090 -0.6 -1.4 hypothetical protein compare
PS417_27715 -0.6 -2.1 Fe-S oxidoreductase compare
PS417_22400 -0.6 -4.1 7-cyano-7-deazaguanine synthase compare
PS417_16490 -0.6 -0.5 cell division protein FtsK compare
PS417_12695 -0.6 -2.7 mannitol dehydrogenase compare
PS417_08625 -0.6 -1.1 membrane protein compare
PS417_15505 -0.6 -1.6 glutaminase compare
PS417_05165 -0.6 -1.0 cytosol aminopeptidase compare
PS417_19840 -0.6 -3.9 flagellar cap protein FliD compare
PS417_21555 -0.6 -4.0 flagellar hook protein FlgE compare
PS417_06200 -0.6 -2.2 protein-PII uridylyltransferase compare
PS417_07170 -0.6 -1.3 hypothetical protein compare
PS417_01030 -0.6 -0.9 glutamine ABC transporter substrate-binding protein compare
PS417_18490 -0.6 -1.3 hypothetical protein compare
PS417_07085 -0.6 -1.5 transcriptional regulator compare
PS417_24380 -0.6 -2.5 guanine permease compare
PS417_15805 -0.6 -1.1 transporter compare
PS417_19880 -0.6 -3.0 flagellar basal body L-ring protein compare
PS417_14755 -0.6 -1.1 UV damage repair endonuclease UvdE compare
PS417_05860 -0.6 -1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms