Experiment set32S485 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 3 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -4.1 -4.7 pantoate--beta-alanine ligase compare
PS417_22450 -3.7 -2.2 ATP-dependent DNA helicase RuvA compare
PS417_21480 -3.1 -1.8 23S rRNA pseudouridylate synthase compare
PS417_27195 -2.8 -2.0 N-acetylglutamate synthase compare
PS417_28050 -2.7 -1.8 hypothetical protein compare
PS417_19350 -2.3 -4.1 GTP cyclohydrolase compare
PS417_02555 -2.3 -10.9 exoribonuclease R compare
PS417_01855 -2.2 -3.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_10645 -2.2 -5.5 magnesium ABC transporter ATPase compare
PS417_19955 -2.1 -2.2 hypothetical protein compare
PS417_06680 -2.1 -5.7 nuclease PIN compare
PS417_03260 -2.1 -1.4 5S ribosomal RNA compare
PS417_23375 -2.0 -2.4 cytochrome C oxidase compare
PS417_27870 -2.0 -3.0 ATP-dependent DNA helicase RecG compare
PS417_08125 -2.0 -0.7 prephenate dehydratase compare
PS417_22565 -2.0 -0.7 formyltetrahydrofolate deformylase compare
PS417_23805 -1.9 -5.2 acetolactate synthase 3 regulatory subunit compare
PS417_02975 -1.7 -5.8 3-dehydroquinate dehydratase compare
PS417_05595 -1.7 -9.2 ornithine carbamoyltransferase compare
PS417_01560 -1.7 -2.3 imidazoleglycerol-phosphate dehydratase compare
PS417_01605 -1.7 -1.5 phosphoglycerate mutase compare
PS417_25720 -1.5 -8.4 anthranilate synthase component II compare
PS417_03525 -1.5 -1.9 hypothetical protein compare
PS417_27865 -1.5 -3.2 LysR family transcriptional regulator compare
PS417_02485 -1.5 -3.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_24600 -1.5 -4.6 hydrogenase compare
PS417_27595 -1.5 -2.8 recombinase XerC compare
PS417_23385 -1.5 -7.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_08090 -1.5 -1.0 3-oxoacyl-ACP reductase compare
PS417_21425 -1.5 -2.4 4-amino-4-deoxychorismate lyase compare
PS417_23810 -1.5 -7.3 acetolactate synthase 3 catalytic subunit compare
PS417_06540 -1.5 -1.8 membrane protein compare
PS417_26775 -1.4 -7.9 thiazole synthase compare
PS417_01580 -1.4 -1.7 imidazole glycerol phosphate synthase compare
PS417_22445 -1.3 -1.5 ATP-dependent DNA helicase RuvB compare
PS417_27795 -1.3 -0.6 orotate phosphoribosyltransferase compare
PS417_27135 -1.3 -0.8 glutamine synthetase compare
PS417_04375 -1.3 -0.9 ABC transporter ATP-binding protein compare
PS417_21105 -1.3 -7.5 aminodeoxychorismate synthase compare
PS417_06730 -1.3 -1.6 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_27425 -1.3 -4.7 exopolyphosphatase compare
PS417_02255 -1.3 -2.2 lipopolysaccharide kinase compare
PS417_26990 -1.2 -0.8 RNA pyrophosphohydrolase compare
PS417_07615 -1.2 -3.9 TetR family transcriptional regulator compare
PS417_01920 -1.2 -1.0 ATP-dependent protease subunit HslV compare
PS417_19645 -1.2 -2.5 chemotaxis protein compare
PS417_08170 -1.2 -7.9 capsular biosynthesis protein compare
PS417_08545 -1.2 -1.8 aromatic ring-opening dioxygenase LigB compare
PS417_06205 -1.1 -5.8 methionine aminopeptidase compare
PS417_26985 -1.1 -6.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_15770 -1.1 -1.4 pyridoxine 5'-phosphate oxidase compare
PS417_23380 -1.1 -1.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_09590 -1.1 -3.4 membrane protein compare
PS417_09470 -1.1 -1.1 hypothetical protein compare
PS417_11705 -1.1 -5.5 cyclic peptide transporter compare
PS417_23900 -1.1 -5.5 poly(A) polymerase compare
PS417_24605 -1.1 -2.0 thiamine-phosphate pyrophosphorylase compare
PS417_23370 -1.1 -3.0 protoheme IX farnesyltransferase compare
PS417_08540 -1.0 -1.8 RNA helicase compare
PS417_20855 -1.0 -1.2 hypothetical protein compare
PS417_08580 -1.0 -4.0 histidine kinase compare
PS417_09235 -1.0 -1.0 molecular chaperone compare
PS417_28070 -1.0 -4.3 phosphate ABC transporter ATP-binding protein compare
PS417_23390 -1.0 -5.0 ubiquinol oxidase subunit II compare
PS417_02280 -1.0 -1.0 GlcNAc-PI de-N-acetylase compare
PS417_10405 -1.0 -1.1 filamentous hemagglutinin compare
PS417_07940 -1.0 -1.7 hypothetical protein compare
PS417_23095 -1.0 -1.1 exodeoxyribonuclease compare
PS417_26730 -0.9 -0.6 pyrroline-5-carboxylate reductase compare
PS417_23160 -0.9 -1.4 50S rRNA methyltransferase compare
PS417_07710 -0.9 -2.2 membrane protein compare
PS417_12565 -0.9 -1.9 2-dehydro-3-deoxygluconokinase compare
PS417_15135 -0.9 -1.5 hypothetical protein compare
PS417_01915 -0.9 -0.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_23825 -0.9 -4.2 penicillin-binding protein compare
PS417_15400 -0.9 -1.2 hypothetical protein compare
PS417_13305 -0.9 -1.3 hypothetical protein compare
PS417_27605 -0.9 -3.9 hypothetical protein compare
PS417_16510 -0.9 -3.2 Clp protease ClpX compare
PS417_21655 -0.9 -1.0 aspartate kinase compare
PS417_16560 -0.9 -2.4 GNAT family acetyltransferase compare
PS417_15915 -0.9 -1.4 hypothetical protein compare
PS417_02270 -0.9 -2.4 carbamoyltransferase compare
PS417_03560 -0.9 -0.9 GTP-binding protein compare
PS417_18310 -0.8 -0.7 hypothetical protein compare
PS417_23995 -0.8 -0.7 preprotein translocase subunit SecG compare
PS417_19675 -0.8 -2.6 chemotaxis protein CheY compare
PS417_08135 -0.8 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_10425 -0.8 -1.5 hypothetical protein compare
PS417_20610 -0.8 -1.3 hypothetical protein compare
PS417_03830 -0.8 -4.3 protein disaggregation chaperone compare
PS417_04365 -0.8 -0.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21625 -0.8 -0.8 DNA-binding protein compare
PS417_04960 -0.8 -1.5 hypothetical protein compare
PS417_12695 -0.8 -3.9 mannitol dehydrogenase compare
PS417_09745 -0.8 -2.4 peptide ABC transporter substrate-binding protein compare
PS417_24430 -0.8 -1.3 3-dehydroquinate dehydratase compare
PS417_02455 -0.8 -3.0 putative transporter, required for glycine utilization (from data) compare
PS417_18885 -0.8 -2.2 GntR family transcriptional regulator compare
PS417_06365 -0.8 -3.0 RNA polymerase sigma factor compare
PS417_04585 -0.8 -1.0 hypothetical protein compare
PS417_03300 -0.8 -1.4 alanine acetyltransferase compare
PS417_14045 -0.8 -2.8 alkyl hydroperoxide reductase compare
PS417_23910 -0.8 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_24560 -0.8 -2.0 ferrous iron transporter compare
PS417_18235 -0.8 -1.9 nitrile hydratase compare
PS417_19655 -0.8 -3.4 chemotaxis protein CheW compare
PS417_22840 -0.8 -1.2 tRNA-Met compare
PS417_22535 -0.7 -3.6 ornithine acetyltransferase compare
PS417_26335 -0.7 -1.8 BetI family transcriptional regulator compare
PS417_05815 -0.7 -1.9 recombinase RecA compare
PS417_05985 -0.7 -1.4 chemotaxis protein CheY compare
PS417_25710 -0.7 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_23360 -0.7 -0.8 hypothetical protein compare
PS417_05345 -0.7 -2.7 exotoxin compare
PS417_09595 -0.7 -2.9 membrane protein compare
PS417_26605 -0.7 -0.9 malonate decarboxylase subunit beta compare
PS417_00180 -0.7 -1.4 tryptophan synthase subunit alpha compare
PS417_26420 -0.7 -1.3 hypothetical protein compare
PS417_04420 -0.7 -3.7 histidinol dehydrogenase compare
PS417_04270 -0.7 -3.4 ribonuclease G compare
PS417_21600 -0.7 -4.1 pilus assembly protein PilZ compare
PS417_02865 -0.7 -2.2 peptidase compare
PS417_09830 -0.7 -3.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_15510 -0.7 -1.5 hypothetical protein compare
PS417_22530 -0.7 -2.8 hypothetical protein compare
PS417_02510 -0.7 -3.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_28350 -0.7 -3.3 fatty acid methyltransferase compare
PS417_20775 -0.7 -2.2 coproporphyrinogen III oxidase compare
PS417_20985 -0.7 -0.5 porin compare
PS417_00045 -0.7 -1.1 glycerol acyltransferase compare
PS417_22620 -0.7 -2.6 pyruvate kinase compare
PS417_25895 -0.7 -1.3 glyoxalase compare
PS417_16555 -0.7 -0.9 cupin compare
PS417_00995 -0.7 -1.5 alpha/beta hydrolase compare
PS417_13510 -0.7 -0.7 polyketide cyclase compare
PS417_22575 -0.7 -3.7 exonuclease I compare
PS417_27300 -0.7 -0.6 cell division protein ZapA compare
PS417_22895 -0.7 -4.5 tyrosine recombinase XerD compare
PS417_12755 -0.7 -1.8 RND transporter compare
PS417_19095 -0.7 -1.0 hypothetical protein compare
PS417_24935 -0.7 -0.7 hypothetical protein compare
PS417_27295 -0.7 -2.4 hypothetical protein compare
PS417_06455 -0.7 -2.7 Fe(II)-dependent oxygenase compare
PS417_00455 -0.7 -1.0 hypothetical protein compare
PS417_23775 -0.7 -0.7 exodeoxyribonuclease V subunit beta compare
PS417_04390 -0.7 -1.5 toluene tolerance protein compare
PS417_23705 -0.7 -1.8 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) compare
PS417_12355 -0.7 -0.9 magnesium chelatase compare
PS417_27815 -0.7 -1.0 hypothetical protein compare
PS417_19850 -0.6 -3.5 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_15085 -0.6 -1.5 ATPase AAA compare
PS417_27610 -0.6 -3.3 hypothetical protein compare
PS417_25825 -0.6 -1.5 sulfurtransferase compare
PS417_10265 -0.6 -1.9 peptidase compare
PS417_07575 -0.6 -2.6 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_22825 -0.6 -3.2 hypothetical protein compare
PS417_09600 -0.6 -1.9 glycosyl transferase family 1 compare
PS417_02395 -0.6 -1.5 DNA topoisomerase IV subunit B compare
PS417_13755 -0.6 -1.5 oxidoreductase compare
PS417_09615 -0.6 -2.3 glycosyl transferase family 1 compare
PS417_12585 -0.6 -3.0 acriflavine resistance protein B compare
PS417_28080 -0.6 -4.2 phosphate ABC transporter permease compare
PS417_28515 -0.6 -1.4 16S rRNA methyltransferase compare
PS417_25225 -0.6 -1.0 MFS transporter compare
PS417_18540 -0.6 -2.0 colicin V production CvpA compare
PS417_06620 -0.6 -1.0 hypothetical protein compare
PS417_23725 -0.6 -1.9 methylmalonate-semialdehyde dehydrogenase compare
PS417_03465 -0.6 -0.8 type III secretion protein compare
PS417_00405 -0.6 -2.9 DNA polymerase I compare
PS417_21515 -0.6 -3.7 transcriptional regulator compare
PS417_00155 -0.6 -1.5 2-dehydro-3-deoxygalactonokinase compare
PS417_19665 -0.6 -1.7 flagellar motor protein MotD compare
PS417_11820 -0.6 -1.5 histidine kinase compare
PS417_05975 -0.6 -0.4 chemotaxis protein CheW compare
PS417_19190 -0.6 -2.2 BolA family transcriptional regulator compare
PS417_21630 -0.6 -1.1 magnesium transporter compare
PS417_01435 -0.6 -0.9 hypothetical protein compare
PS417_25390 -0.6 -1.6 MFS transporter compare
PS417_21430 -0.6 -0.7 3-oxoacyl-ACP synthase compare
PS417_12280 -0.6 -1.1 MerR family transcriptional regulator compare
PS417_14085 -0.6 -1.9 hypothetical protein compare
PS417_10095 -0.6 -1.0 hypothetical protein compare
PS417_13710 -0.6 -2.0 hypothetical protein compare
PS417_17675 -0.6 -1.1 ABC transporter compare
PS417_01620 -0.6 -0.9 preprotein translocase subunit SecB compare
PS417_06710 -0.6 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_18425 -0.6 -0.8 sporulation protein compare
PS417_05445 -0.6 -0.9 DNA mismatch repair protein MutT compare
PS417_15655 -0.6 -1.8 hypothetical protein compare
PS417_01130 -0.6 -1.4 L-glyceraldehyde 3-phosphate reductase compare
PS417_04305 -0.6 -0.9 aspartate ammonia-lyase compare
PS417_08410 -0.6 -0.9 hypothetical protein compare
PS417_02780 -0.6 -3.4 DNA-binding protein compare
PS417_27640 -0.6 -0.7 TetR family transcriptional regulator compare
PS417_01965 -0.6 -1.0 fimbriae biosynthesis protein compare
PS417_11720 -0.6 -1.6 class V aminotransferase compare
PS417_07640 -0.6 -1.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_24585 -0.6 -3.4 AMP nucleosidase compare
PS417_09245 -0.6 -0.7 recombinase RdgC compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress 80% Methanol across organisms