Experiment set32S482 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 0.5 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -4.7 -5.6 pantoate--beta-alanine ligase compare
PS417_27195 -3.8 -1.9 N-acetylglutamate synthase compare
PS417_22450 -3.8 -2.3 ATP-dependent DNA helicase RuvA compare
PS417_21430 -3.4 -2.4 3-oxoacyl-ACP synthase compare
PS417_02485 -3.2 -4.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_28050 -3.1 -2.4 hypothetical protein compare
PS417_03260 -3.0 -1.4 5S ribosomal RNA compare
PS417_06685 -3.0 -1.5 beta-ketoadipyl CoA thiolase compare
PS417_23995 -2.9 -1.5 preprotein translocase subunit SecG compare
PS417_04365 -2.7 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_24615 -2.6 -2.3 hypothetical protein compare
PS417_10645 -2.4 -6.9 magnesium ABC transporter ATPase compare
PS417_00345 -2.4 -2.9 copper-binding protein compare
PS417_26990 -2.4 -1.2 RNA pyrophosphohydrolase compare
PS417_16490 -2.3 -1.7 cell division protein FtsK compare
PS417_02280 -2.3 -1.7 GlcNAc-PI de-N-acetylase compare
PS417_28070 -2.3 -8.3 phosphate ABC transporter ATP-binding protein compare
PS417_06680 -2.2 -5.8 nuclease PIN compare
PS417_08125 -2.0 -0.7 prephenate dehydratase compare
PS417_22565 -2.0 -0.7 formyltetrahydrofolate deformylase compare
PS417_06530 -2.0 -3.3 membrane protein compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_02555 -2.0 -10.1 exoribonuclease R compare
PS417_19425 -1.9 -1.5 allantoicase compare
PS417_03830 -1.9 -9.1 protein disaggregation chaperone compare
PS417_00755 -1.9 -1.2 biofilm PGA synthesis protein PgaD compare
PS417_19955 -1.9 -1.9 hypothetical protein compare
PS417_28080 -1.9 -10.8 phosphate ABC transporter permease compare
PS417_08170 -1.8 -9.9 capsular biosynthesis protein compare
PS417_27865 -1.8 -3.2 LysR family transcriptional regulator compare
PS417_26775 -1.8 -9.0 thiazole synthase compare
PS417_26985 -1.6 -6.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27605 -1.5 -6.1 hypothetical protein compare
PS417_04380 -1.5 -1.1 ABC transporter permease compare
PS417_28075 -1.5 -4.0 phosphate ABC transporter permease compare
PS417_22620 -1.5 -3.7 pyruvate kinase compare
PS417_01095 -1.4 -1.4 amino acid ABC transporter ATP-binding protein compare
PS417_20775 -1.4 -2.9 coproporphyrinogen III oxidase compare
PS417_22570 -1.4 -1.0 H-NS histone compare
PS417_27795 -1.4 -0.7 orotate phosphoribosyltransferase compare
PS417_07615 -1.4 -4.9 TetR family transcriptional regulator compare
PS417_27435 -1.4 -5.7 polyphosphate kinase compare
PS417_23385 -1.4 -6.7 cytochrome o ubiquinol oxidase subunit I compare
PS417_14045 -1.4 -4.8 alkyl hydroperoxide reductase compare
PS417_23390 -1.4 -5.1 ubiquinol oxidase subunit II compare
PS417_21480 -1.4 -1.6 23S rRNA pseudouridylate synthase compare
PS417_23375 -1.3 -1.9 cytochrome C oxidase compare
PS417_23380 -1.3 -2.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_14655 -1.3 -1.5 lysine transporter LysE compare
PS417_07305 -1.3 -0.9 3-beta hydroxysteroid dehydrogenase compare
PS417_01920 -1.3 -0.6 ATP-dependent protease subunit HslV compare
PS417_06200 -1.3 -6.1 protein-PII uridylyltransferase compare
PS417_12595 -1.3 -1.7 transcriptional regulator compare
PS417_02630 -1.3 -2.9 NAD synthetase compare
PS417_23900 -1.3 -7.1 poly(A) polymerase compare
PS417_24600 -1.2 -6.2 hydrogenase compare
PS417_23810 -1.2 -6.1 acetolactate synthase 3 catalytic subunit compare
PS417_04420 -1.2 -6.7 histidinol dehydrogenase compare
PS417_14140 -1.2 -3.1 membrane protein compare
PS417_00440 -1.2 -5.2 N-acetylmuramoyl-L-alanine amidase compare
PS417_02255 -1.2 -1.6 lipopolysaccharide kinase compare
PS417_09615 -1.2 -4.1 glycosyl transferase family 1 compare
PS417_09590 -1.2 -4.0 membrane protein compare
PS417_06895 -1.2 -2.6 DNA-binding protein compare
PS417_02975 -1.2 -4.3 3-dehydroquinate dehydratase compare
PS417_06365 -1.2 -6.7 RNA polymerase sigma factor compare
PS417_17645 -1.2 -2.1 RND transporter compare
PS417_19350 -1.2 -4.0 GTP cyclohydrolase compare
PS417_03300 -1.1 -2.4 alanine acetyltransferase compare
PS417_28085 -1.1 -8.8 phosphate-binding protein compare
PS417_02270 -1.1 -2.5 carbamoyltransferase compare
PS417_26850 -1.1 -0.9 twin-arginine translocation pathway signal protein compare
PS417_23370 -1.1 -3.0 protoheme IX farnesyltransferase compare
PS417_12655 -1.1 -3.6 methionine aminopeptidase compare
PS417_27245 -1.1 -1.9 aminotransferase DegT compare
PS417_01560 -1.1 -1.6 imidazoleglycerol-phosphate dehydratase compare
PS417_05445 -1.1 -1.5 DNA mismatch repair protein MutT compare
PS417_08580 -1.1 -3.2 histidine kinase compare
PS417_23545 -1.1 -1.5 gamma-glutamyl kinase compare
PS417_00045 -1.1 -1.5 glycerol acyltransferase compare
PS417_07140 -1.0 -2.4 peptidase M48 compare
PS417_09600 -1.0 -2.8 glycosyl transferase family 1 compare
PS417_24605 -1.0 -2.7 thiamine-phosphate pyrophosphorylase compare
PS417_19650 -1.0 -2.9 chemotaxis protein CheW compare
PS417_13870 -1.0 -3.3 hypothetical protein compare
PS417_26500 -1.0 -3.2 thioesterase compare
PS417_06335 -1.0 -1.9 S-formylglutathione hydrolase compare
PS417_00995 -1.0 -2.1 alpha/beta hydrolase compare
PS417_08410 -1.0 -2.1 hypothetical protein compare
PS417_04390 -1.0 -2.4 toluene tolerance protein compare
PS417_06770 -1.0 -4.0 multidrug transporter compare
PS417_25400 -1.0 -5.3 bacterioferritin compare
PS417_16555 -1.0 -1.4 cupin compare
PS417_01580 -1.0 -1.5 imidazole glycerol phosphate synthase compare
PS417_07640 -1.0 -2.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_00660 -1.0 -2.5 DSBA oxidoreductase compare
PS417_23950 -1.0 -0.9 polynucleotide phosphorylase/polyadenylase compare
PS417_24800 -1.0 -5.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_11705 -1.0 -4.2 cyclic peptide transporter compare
PS417_27610 -1.0 -6.4 hypothetical protein compare
PS417_05975 -1.0 -0.7 chemotaxis protein CheW compare
PS417_22445 -1.0 -2.3 ATP-dependent DNA helicase RuvB compare
PS417_19850 -1.0 -5.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_17680 -1.0 -3.2 ABC transporter compare
PS417_01575 -1.0 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_08540 -1.0 -1.8 RNA helicase compare
PS417_23805 -0.9 -3.0 acetolactate synthase 3 regulatory subunit compare
PS417_28515 -0.9 -3.0 16S rRNA methyltransferase compare
PS417_06775 -0.9 -4.3 antibiotic transporter compare
PS417_01915 -0.9 -0.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_04385 -0.9 -1.6 organic solvent ABC transporter substrate-binding protein compare
PS417_27425 -0.9 -3.2 exopolyphosphatase compare
PS417_01855 -0.9 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_11400 -0.9 -1.5 phosphoglycerate mutase compare
PS417_15075 -0.9 -5.5 NAD-glutamate dehydrogenase compare
PS417_03995 -0.9 -2.4 Fe(II)-dependent oxygenase compare
PS417_25405 -0.9 -6.3 catalase compare
PS417_22795 -0.9 -0.9 exclusion suppressor FxsA compare
PS417_22735 -0.9 -5.7 thiol oxidoreductase compare
PS417_00550 -0.9 -1.0 hypothetical protein compare
PS417_06330 -0.9 -3.1 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_23025 -0.9 -3.2 murein transglycosylase compare
PS417_02510 -0.9 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_07170 -0.9 -2.7 hypothetical protein compare
PS417_09620 -0.9 -5.1 lipopolysaccharide biosynthesis protein compare
PS417_05595 -0.9 -5.1 ornithine carbamoyltransferase compare
PS417_21625 -0.9 -0.9 DNA-binding protein compare
PS417_24745 -0.9 -1.7 gamma-glutamyl phosphate reductase compare
PS417_00180 -0.9 -1.6 tryptophan synthase subunit alpha compare
PS417_19755 -0.8 -1.6 flagellar motor switch protein FliM compare
PS417_20130 -0.8 -5.6 dehydrogenase compare
PS417_27515 -0.8 -2.9 heme biosynthesis protein HemY compare
PS417_06600 -0.8 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_01565 -0.8 -2.4 imidazole glycerol phosphate synthase compare
PS417_22575 -0.8 -4.6 exonuclease I compare
PS417_05815 -0.8 -2.6 recombinase RecA compare
PS417_20985 -0.8 -0.5 porin compare
PS417_00665 -0.8 -3.4 RND transporter compare
PS417_10245 -0.8 -1.6 hypothetical protein compare
PS417_05885 -0.8 -4.7 potassium transporter Kup compare
PS417_19160 -0.8 -3.4 hypothetical protein compare
PS417_01955 -0.8 -5.0 peptidase compare
PS417_04650 -0.8 -0.4 D-alanine--D-alanine ligase compare
PS417_27340 -0.8 -2.5 NADPH:quinone oxidoreductase compare
PS417_00655 -0.8 -3.7 DSBA oxidoreductase compare
PS417_07710 -0.8 -2.1 membrane protein compare
PS417_22610 -0.8 -3.3 pilus assembly protein PilZ compare
PS417_11940 -0.8 -5.7 TonB-dependent receptor compare
PS417_27105 -0.8 -2.7 spermidine/putrescine ABC transporter permease compare
PS417_05590 -0.8 -4.7 iron ABC transporter ATP-binding protein compare
PS417_01280 -0.8 -1.4 peptidoglycan-binding protein LysM compare
PS417_22775 -0.8 -3.6 histidine kinase compare
PS417_21065 -0.8 -1.3 3-methylitaconate isomerase compare
PS417_10815 -0.8 -3.5 TetR family transcriptional regulator compare
PS417_24585 -0.8 -5.0 AMP nucleosidase compare
PS417_14555 -0.8 -3.1 AsnC family transcriptional regulator compare
PS417_14590 -0.8 -1.4 LysR family transcriptional regulator compare
PS417_06205 -0.8 -4.4 methionine aminopeptidase compare
PS417_24935 -0.8 -0.9 hypothetical protein compare
PS417_09325 -0.8 -2.7 peptidase S41 compare
PS417_18355 -0.8 -5.2 DNA-binding protein compare
PS417_05325 -0.8 -1.9 fimbrial protein compare
PS417_09730 -0.8 -2.6 adenylylsulfate kinase compare
PS417_19800 -0.8 -2.4 flagellar motor switch protein FliG compare
PS417_07565 -0.8 -1.3 hypothetical protein compare
PS417_01950 -0.7 -2.9 malate dehydrogenase compare
PS417_24630 -0.7 -1.9 ATP-binding protein compare
PS417_04415 -0.7 -2.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_16360 -0.7 -3.0 histidine kinase compare
PS417_13205 -0.7 -1.3 isochorismate-pyruvate lyase compare
PS417_25720 -0.7 -4.9 anthranilate synthase component II compare
PS417_22195 -0.7 -3.2 peptidase compare
PS417_11460 -0.7 -4.6 divalent metal cation transporter MntH compare
PS417_25765 -0.7 -1.6 transcriptional regulator compare
PS417_16915 -0.7 -3.8 hemolysin D compare
PS417_19835 -0.7 -1.3 flagellar biosynthesis protein FliS compare
PS417_09210 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_07515 -0.7 -5.6 aconitate hydratase compare
PS417_00650 -0.7 -0.7 LysR family transcriptional regulator compare
PS417_21780 -0.7 -2.3 argininosuccinate lyase compare
PS417_27595 -0.7 -1.3 recombinase XerC compare
PS417_03990 -0.7 -5.5 ligand-gated channel protein compare
PS417_02865 -0.7 -2.1 peptidase compare
PS417_22740 -0.7 -3.7 imelysin compare
PS417_03380 -0.7 -1.0 hypothetical protein compare
PS417_24320 -0.7 -3.0 large-conductance mechanosensitive channel compare
PS417_09470 -0.7 -0.8 hypothetical protein compare
PS417_27295 -0.7 -3.2 hypothetical protein compare
PS417_21105 -0.7 -3.7 aminodeoxychorismate synthase compare
PS417_09595 -0.7 -2.6 membrane protein compare
PS417_08155 -0.7 -0.9 integration host factor subunit beta compare
PS417_08435 -0.7 -1.1 pilus assembly protein PilZ compare
PS417_05610 -0.7 -2.2 bacterioferritin compare
PS417_22065 -0.7 -3.8 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_05165 -0.7 -1.4 cytosol aminopeptidase compare
PS417_05140 -0.7 -1.5 dipicolinate synthase compare
PS417_18425 -0.7 -1.0 sporulation protein compare
PS417_05365 -0.7 -1.2 FAD-binding protein compare
PS417_19705 -0.7 -1.8 flagellar biosynthesis regulator FlhF compare
PS417_01550 -0.7 -3.0 cell envelope biogenesis protein AsmA compare


Specific Phenotypes

For 2 genes in this experiment

For solid stress 80% Methanol in Pseudomonas simiae WCS417

For solid stress 80% Methanol across organisms