Experiment set32S481 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 2 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_27865 -4.5 -3.7 LysR family transcriptional regulator compare
PS417_23915 -4.2 -5.0 pantoate--beta-alanine ligase compare
PS417_05975 -3.8 -1.6 chemotaxis protein CheW compare
PS417_22450 -3.2 -2.2 ATP-dependent DNA helicase RuvA compare
PS417_16490 -3.0 -1.7 cell division protein FtsK compare
PS417_00650 -2.9 -1.7 LysR family transcriptional regulator compare
PS417_05365 -2.8 -3.3 FAD-binding protein compare
PS417_00655 -2.5 -6.8 DSBA oxidoreductase compare
PS417_01915 -2.5 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_06680 -2.5 -4.7 nuclease PIN compare
PS417_01855 -2.4 -2.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_28050 -2.3 -1.6 hypothetical protein compare
PS417_00665 -2.2 -7.0 RND transporter compare
PS417_18310 -2.1 -1.4 hypothetical protein compare
PS417_06770 -2.1 -5.4 multidrug transporter compare
PS417_28070 -2.1 -8.4 phosphate ABC transporter ATP-binding protein compare
PS417_10645 -2.1 -6.6 magnesium ABC transporter ATPase compare
PS417_02880 -2.0 -2.0 copper chaperone compare
PS417_04585 -1.9 -1.2 hypothetical protein compare
PS417_04380 -1.9 -1.3 ABC transporter permease compare
PS417_24600 -1.9 -4.9 hydrogenase compare
PS417_14045 -1.9 -4.0 alkyl hydroperoxide reductase compare
PS417_02255 -1.9 -3.2 lipopolysaccharide kinase compare
PS417_28080 -1.8 -12.6 phosphate ABC transporter permease compare
PS417_23375 -1.7 -2.4 cytochrome C oxidase compare
PS417_26985 -1.7 -6.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_02555 -1.7 -10.2 exoribonuclease R compare
PS417_08125 -1.7 -0.7 prephenate dehydratase compare
PS417_06375 -1.7 -0.7 deoxycytidine triphosphate deaminase compare
PS417_22565 -1.7 -0.7 formyltetrahydrofolate deformylase compare
PS417_26775 -1.7 -9.5 thiazole synthase compare
PS417_00660 -1.6 -3.7 DSBA oxidoreductase compare
PS417_27300 -1.6 -1.1 cell division protein ZapA compare
PS417_28075 -1.6 -5.6 phosphate ABC transporter permease compare
PS417_23380 -1.6 -2.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_23950 -1.6 -1.3 polynucleotide phosphorylase/polyadenylase compare
PS417_23390 -1.6 -6.7 ubiquinol oxidase subunit II compare
PS417_04390 -1.5 -2.7 toluene tolerance protein compare
PS417_09590 -1.5 -7.1 membrane protein compare
PS417_05590 -1.5 -5.3 iron ABC transporter ATP-binding protein compare
PS417_28085 -1.5 -11.3 phosphate-binding protein compare
PS417_23545 -1.5 -1.5 gamma-glutamyl kinase compare
PS417_23135 -1.4 -2.3 GTP-binding protein compare
PS417_08170 -1.4 -7.8 capsular biosynthesis protein compare
PS417_23385 -1.4 -5.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_22195 -1.4 -5.4 peptidase compare
PS417_05595 -1.4 -7.5 ornithine carbamoyltransferase compare
PS417_02720 -1.4 -1.3 TetR family transcriptional regulator compare
PS417_24605 -1.4 -3.5 thiamine-phosphate pyrophosphorylase compare
PS417_27195 -1.4 -1.5 N-acetylglutamate synthase compare
PS417_04420 -1.3 -5.1 histidinol dehydrogenase compare
PS417_01955 -1.3 -6.3 peptidase compare
PS417_06775 -1.3 -5.4 antibiotic transporter compare
PS417_27605 -1.3 -4.2 hypothetical protein compare
PS417_04385 -1.3 -1.8 organic solvent ABC transporter substrate-binding protein compare
PS417_23025 -1.3 -4.1 murein transglycosylase compare
PS417_21425 -1.3 -2.4 4-amino-4-deoxychorismate lyase compare
PS417_27245 -1.3 -1.7 aminotransferase DegT compare
PS417_22735 -1.3 -7.0 thiol oxidoreductase compare
PS417_06365 -1.3 -5.5 RNA polymerase sigma factor compare
PS417_03260 -1.2 -1.2 5S ribosomal RNA compare
PS417_15090 -1.2 -2.4 hypothetical protein compare
PS417_03995 -1.2 -2.6 Fe(II)-dependent oxygenase compare
PS417_23995 -1.2 -1.0 preprotein translocase subunit SecG compare
PS417_27870 -1.2 -2.1 ATP-dependent DNA helicase RecG compare
PS417_07140 -1.2 -3.2 peptidase M48 compare
PS417_00755 -1.2 -1.0 biofilm PGA synthesis protein PgaD compare
PS417_27795 -1.1 -0.6 orotate phosphoribosyltransferase compare
PS417_24745 -1.1 -1.8 gamma-glutamyl phosphate reductase compare
PS417_00920 -1.1 -5.3 diguanylate cyclase compare
PS417_22530 -1.1 -3.2 hypothetical protein compare
PS417_02485 -1.1 -2.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_09325 -1.0 -3.3 peptidase S41 compare
PS417_24800 -1.0 -4.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_01565 -1.0 -2.8 imidazole glycerol phosphate synthase compare
PS417_18630 -1.0 -3.4 tRNA-dihydrouridine synthase C compare
PS417_07615 -1.0 -3.4 TetR family transcriptional regulator compare
PS417_23370 -1.0 -2.8 protoheme IX farnesyltransferase compare
PS417_10305 -1.0 -2.0 hypothetical protein compare
PS417_00045 -1.0 -1.5 glycerol acyltransferase compare
PS417_02270 -1.0 -2.8 carbamoyltransferase compare
PS417_26605 -1.0 -1.2 malonate decarboxylase subunit beta compare
PS417_18395 -1.0 -2.1 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_21630 -1.0 -1.4 magnesium transporter compare
PS417_19940 -0.9 -6.5 membrane protein compare
PS417_06895 -0.9 -2.0 DNA-binding protein compare
PS417_12595 -0.9 -2.0 transcriptional regulator compare
PS417_26500 -0.9 -4.1 thioesterase compare
PS417_01920 -0.9 -0.9 ATP-dependent protease subunit HslV compare
PS417_05200 -0.9 -2.0 DNA recombination protein RecO compare
PS417_00475 -0.9 -4.4 membrane protein compare
PS417_05815 -0.9 -2.0 recombinase RecA compare
PS417_01195 -0.9 -2.4 RNA-binding protein S4 compare
PS417_06335 -0.9 -2.2 S-formylglutathione hydrolase compare
PS417_25720 -0.9 -3.5 anthranilate synthase component II compare
PS417_18545 -0.9 -2.4 cell division protein compare
PS417_27425 -0.9 -3.8 exopolyphosphatase compare
PS417_23805 -0.9 -2.2 acetolactate synthase 3 regulatory subunit compare
PS417_27705 -0.8 -1.4 amino acid dehydrogenase compare
PS417_17215 -0.8 -1.2 peptidylprolyl isomerase compare
PS417_22745 -0.8 -4.2 hypothetical protein compare
PS417_01580 -0.8 -1.3 imidazole glycerol phosphate synthase compare
PS417_09600 -0.8 -2.6 glycosyl transferase family 1 compare
PS417_14245 -0.8 -1.3 hypothetical protein compare
PS417_00825 -0.8 -2.2 recombinase RecF compare
PS417_01575 -0.8 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_26990 -0.8 -0.5 RNA pyrophosphohydrolase compare
PS417_02510 -0.8 -2.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_14835 -0.8 -2.1 amidase compare
PS417_02975 -0.8 -2.9 3-dehydroquinate dehydratase compare
PS417_22840 -0.8 -0.9 tRNA-Met compare
PS417_01550 -0.8 -3.7 cell envelope biogenesis protein AsmA compare
PS417_12355 -0.8 -1.3 magnesium chelatase compare
PS417_24710 -0.8 -4.5 lipoprotein compare
PS417_05825 -0.8 -2.2 cytochrome D ubiquinol oxidase subunit II compare
PS417_13510 -0.8 -0.9 polyketide cyclase compare
PS417_03990 -0.8 -5.5 ligand-gated channel protein compare
PS417_27835 -0.8 -4.1 endoribonuclease compare
PS417_20130 -0.8 -5.7 dehydrogenase compare
PS417_22620 -0.8 -1.8 pyruvate kinase compare
PS417_15075 -0.8 -4.2 NAD-glutamate dehydrogenase compare
PS417_05865 -0.8 -1.6 hypothetical protein compare
PS417_07305 -0.8 -1.1 3-beta hydroxysteroid dehydrogenase compare
PS417_01850 -0.8 -2.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_22170 -0.8 -2.4 acetyltransferase compare
PS417_15035 -0.8 -1.4 alkylhydroperoxidase compare
PS417_20725 -0.8 -1.5 cbb3-type cytochrome c oxidase subunit II compare
PS417_15095 -0.8 -1.2 hypothetical protein compare
PS417_11615 -0.8 -1.4 urea ABC transporter ATP-binding protein compare
PS417_09210 -0.8 -1.6 TetR family transcriptional regulator compare
PS417_24460 -0.8 -1.7 hypothetical protein compare
PS417_02475 -0.8 -1.7 N-acetylmuramoyl-L-alanine amidase compare
PS417_18355 -0.8 -4.1 DNA-binding protein compare
PS417_00085 -0.8 -1.8 16S rRNA methyltransferase compare
PS417_00705 -0.8 -1.2 MarR family transcriptional regulator compare
PS417_18370 -0.8 -1.2 hypothetical protein compare
PS417_09595 -0.8 -3.6 membrane protein compare
PS417_27610 -0.8 -3.6 hypothetical protein compare
PS417_03300 -0.8 -1.5 alanine acetyltransferase compare
PS417_20055 -0.8 -2.3 cob(II)yrinic acid a,c-diamide reductase compare
PS417_15460 -0.7 -3.5 GntR family transcriptional regulator compare
PS417_04000 -0.7 -4.2 hypothetical protein compare
PS417_09830 -0.7 -2.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_23810 -0.7 -4.3 acetolactate synthase 3 catalytic subunit compare
PS417_14940 -0.7 -1.4 LysR family transcriptional regulator compare
PS417_28015 -0.7 -1.9 rubredoxin compare
PS417_06600 -0.7 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_01560 -0.7 -1.1 imidazoleglycerol-phosphate dehydratase compare
PS417_21430 -0.7 -0.8 3-oxoacyl-ACP synthase compare
PS417_12455 -0.7 -2.4 hydrolase compare
PS417_07710 -0.7 -1.5 membrane protein compare
PS417_27520 -0.7 -1.7 uroporphyrin-III methyltransferase compare
PS417_04590 -0.7 -2.2 methyltransferase compare
PS417_11390 -0.7 -2.6 LysR family transcriptional regulator compare
PS417_16495 -0.7 -2.4 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_27005 -0.7 -0.9 membrane protein compare
PS417_26730 -0.7 -0.5 pyrroline-5-carboxylate reductase compare
PS417_26530 -0.7 -1.1 hypothetical protein compare
PS417_21255 -0.7 -1.1 hypothetical protein compare
PS417_27435 -0.7 -4.1 polyphosphate kinase compare
PS417_26995 -0.7 -4.4 phosphoserine phosphatase compare
PS417_16560 -0.7 -1.4 GNAT family acetyltransferase compare
PS417_08130 -0.7 -1.2 aspartate aminotransferase compare
PS417_10860 -0.7 -1.6 flagellar basal body rod protein FlgG compare
PS417_16195 -0.7 -0.9 AraC family transcriptional regulator compare
PS417_25225 -0.7 -1.2 MFS transporter compare
PS417_22825 -0.7 -3.1 hypothetical protein compare
PS417_03455 -0.7 -1.0 type III secretion protein compare
PS417_24585 -0.7 -4.2 AMP nucleosidase compare
PS417_03000 -0.7 -2.3 translation initiation factor Sui1 compare
PS417_15585 -0.7 -2.1 DNA repair nucleotidyltransferase compare
PS417_22740 -0.7 -2.9 imelysin compare
PS417_22895 -0.7 -3.2 tyrosine recombinase XerD compare
PS417_06530 -0.7 -1.4 membrane protein compare
PS417_00550 -0.7 -0.8 hypothetical protein compare
PS417_07410 -0.7 -1.2 hypothetical protein compare
PS417_02160 -0.7 -0.9 hypothetical protein compare
PS417_22690 -0.6 -1.5 phosphogluconate dehydratase compare
PS417_13885 -0.6 -2.3 chemotaxis protein CheY compare
PS417_24615 -0.6 -0.8 hypothetical protein compare
PS417_16760 -0.6 -2.8 membrane protein compare
PS417_20880 -0.6 -1.4 GntR family transcriptional regulator compare
PS417_24780 -0.6 -4.5 peptidase C13 compare
PS417_13240 -0.6 -2.3 siderophore biosynthesis protein compare
PS417_11400 -0.6 -1.1 phosphoglycerate mutase compare
PS417_12005 -0.6 -2.4 hypothetical protein compare
PS417_08090 -0.6 -0.6 3-oxoacyl-ACP reductase compare
PS417_15705 -0.6 -1.6 nitrate reductase compare
PS417_03005 -0.6 -3.4 arginine decarboxylase compare
PS417_02225 -0.6 -1.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_04270 -0.6 -3.3 ribonuclease G compare
PS417_05695 -0.6 -2.1 transcriptional regulator compare
PS417_11380 -0.6 -2.5 peptidylprolyl isomerase compare
PS417_06145 -0.6 -0.8 hypothetical protein compare
PS417_22535 -0.6 -3.3 ornithine acetyltransferase compare
PS417_07400 -0.6 -2.1 hypothetical protein compare
PS417_18060 -0.6 -1.5 general secretion pathway protein GspJ compare
PS417_26815 -0.6 -0.8 peptidase M16 compare
PS417_21480 -0.6 -0.6 23S rRNA pseudouridylate synthase compare
PS417_24500 -0.6 -1.2 DEAD/DEAH box helicase compare


Specific Phenotypes

For 3 genes in this experiment

For liquid stress Fraxetin in Pseudomonas simiae WCS417

For liquid stress Fraxetin across organisms