Experiment set32IT075 for Pseudomonas putida KT2440

Compare to:

Timeseries; MIN condition; Bioreplicate 1; Time 7hrs; Measurement replicate 2

200 most important genes:

  gene name fitness t score description  
PP_2847 -4.0 -2.7 Urease accessory protein UreJ compare
PP_4874 -3.8 -3.1 50S ribosomal protein L9 compare
PP_0691 -3.2 -2.2 Glutamate 5-kinase compare
PP_5329 -2.9 -3.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3505 -2.6 -1.5 conserved protein of unknown function compare
PP_1215 -2.3 -2.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_4120 -2.2 -3.2 NADH-quinone oxidoreductase subunit B compare
PP_2581 -2.1 -1.8 conserved protein of unknown function compare
PP_4130 -2.1 -4.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2087 -2.0 -3.8 CmpX protein compare
PP_5327 -2.0 -3.4 putative phosphate ABC transporter, permease subunit compare
PP_2820 -1.9 -1.7 HTH-type transcriptional regulator nfxB compare
PP_2433 -1.9 -1.7 conserved protein of unknown function compare
PP_0035 -1.8 -1.8 putative bactoprenol-linked glycose transferase compare
PP_4994 -1.8 -1.8 conserved protein of unknown function compare
PP_1779 -1.8 -3.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4124 -1.8 -3.6 NADH-quinone oxidoreductase subunit G compare
PP_5748 -1.7 -1.8 cytochrome c heme lyase subunit compare
PP_1319 -1.6 -3.5 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0846 -1.5 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_0984 -1.5 -3.3 conserved membrane protein of unknown function compare
PP_2414 -1.5 -1.5 conserved exported protein of unknown function compare
PP_4824 -1.5 -4.9 Sensor histidine kinase/response regulator compare
PP_4642 -1.4 -1.4 Cyclic diguanosine monophosphate-binding protein compare
PP_4008 -1.4 -3.3 ATP-dependent serine protease compare
PP_4361 -1.4 -5.1 Flagellar hook-length control protein FliK compare
PP_1004 -1.3 -3.3 conserved protein of unknown function compare
PP_1439 -1.3 -1.9 conserved exported protein of unknown function compare
PP_2976 -1.3 -1.8 putative transposase compare
PP_4373 -1.3 -8.9 Transcriptional regulator FleQ compare
PP_1892 -1.2 -2.1 conserved protein of unknown function compare
PP_1237 -1.2 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2107 -1.2 -1.6 conserved protein of unknown function compare
PP_4382 -1.2 -5.0 Peptidoglycan hydrolase FlgJ compare
PP_0855 -1.2 -1.9 conserved protein of unknown function compare
PP_1512 -1.2 -2.2 conserved protein of unknown function compare
PP_4471 -1.2 -3.5 Magnesium transporter compare
PP_4045 -1.2 -1.6 conserved protein of unknown function compare
PP_4121 -1.1 -2.8 NADH-quinone oxidoreductase subunit C/D compare
PP_1493 -1.1 -2.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4895 -1.1 -1.8 tRNA dimethylallyltransferase compare
PP_5582 -1.1 -1.3 conserved protein of unknown function compare
PP_4394 -1.1 -6.5 flagella basal body P-ring formation protein compare
PP_4385 -1.1 -3.3 flagellar basal-body rod protein FlgG compare
PP_0492 -1.1 -3.4 formate dehydrogenase formation protein compare
PP_4369 -1.1 -5.3 Flagellar M-ring protein compare
PP_4937 -1.1 -2.2 toluene tolerance protein compare
PP_4389 -1.0 -3.8 Flagellar basal-body rod modification protein FlgD compare
PP_4344 -1.0 -5.5 flagellar export pore protein compare
PP_4353 -1.0 -3.8 Flagellar biosynthetic protein fliR compare
PP_4126 -1.0 -1.0 NADH-quinone oxidoreductase subunit I compare
PP_2417 -1.0 -1.8 putative Iron ABC transporter, permease protein compare
PP_5393 -1.0 -0.9 putative metal-binding chaperone compare
PP_4094 -1.0 -1.7 conserved protein of unknown function compare
PP_4808 -1.0 -1.0 23S rRNA m3psi1915 methyltransferase compare
PP_4352 -1.0 -5.1 flagellin export apparatus, substrate specificity protein compare
PP_3258 -1.0 -1.9 conserved protein of unknown function compare
PP_0339 -1.0 -2.3 Pyruvate dehydrogenase E1 component compare
PP_4367 -1.0 -2.0 Flagellar assembly protein FliH compare
PP_4381 -1.0 -5.8 Flagellar hook-associated protein FlgK compare
PP_4341 -1.0 -4.3 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_0393 -1.0 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4376 -1.0 -5.8 flagellar filament capping protein compare
PP_5240 -1.0 -2.2 Response regulator compare
PP_0834 -1.0 -0.9 Sec translocation complex subunit YajC compare
PP_4384 -1.0 -5.1 Flagellar L-ring protein compare
PP_0153 -0.9 -1.8 hypothetical protein compare
PP_4378 -0.9 -6.2 flagellin, filament structural protein compare
PP_4342 -0.9 -1.7 flagellar synthesis regulator, putative ATPase compare
PP_3649 -0.9 -2.1 Transcriptional regulator, GntR family compare
PP_3555 -0.9 -2.6 putative Transmembrane sensor compare
PP_4131 -0.9 -2.3 NADH-quinone oxidoreductase subunit N compare
PP_4122 -0.9 -0.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3245 -0.9 -1.3 conserved protein of unknown function compare
PP_4296 -0.9 -1.1 conserved exported protein of unknown function compare
PP_0182 -0.9 -1.9 conserved protein of unknown function compare
PP_5507 -0.9 -2.5 protein of unknown function compare
PP_4368 -0.9 -3.8 flagellar motor switch protein compare
PP_1650 -0.9 -8.4 Sensor protein GacS compare
PP_5441 -0.9 -2.4 protein of unknown function compare
PP_2373 -0.9 -1.7 conserved protein of unknown function compare
PP_1489 -0.9 -2.9 CheW domain protein compare
PP_4390 -0.9 -3.6 flagellar basal-body rod protein FlgC compare
PP_2857 -0.8 -1.6 conserved exported protein of unknown function compare
PP_4847 -0.8 -2.0 chaperone modulatory of CbpA co-chaperone protein compare
PP_4560 -0.8 -2.0 putative Ribonuclease BN compare
PP_2903 -0.8 -0.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0435 -0.8 -2.3 Peptidase, M23/M37 family compare
PP_2000 -0.8 -1.1 amidophosphoribosyl transferase compare
PP_1656 -0.8 -4.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_4380 -0.8 -5.3 Flagellar hook-associated protein FlgL compare
PP_1764 -0.8 -1.0 Phosphoglycolate phosphatase 2 compare
PP_4099 -0.8 -7.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_3040 -0.8 -2.7 Pyocin R2_PP, holin compare
PP_5473 -0.8 -1.7 putative transcriptional regulator, LuxR family compare
PP_0630 -0.8 -1.0 DNA gyrase inhibitor YacG compare
PP_3307 -0.8 -1.7 conserved protein of unknown function compare
PP_0398 -0.8 -1.9 Thiosulfate sulfurtransferase GlpE compare
PP_4693 -0.8 -2.5 RNA polymerase-binding transcription factor DksA compare
PP_4364 -0.8 -1.5 putative Anti-sigma F factor antagonist compare
PP_5054 -0.8 -1.3 glutaredoxin 3 compare
PP_3863 -0.8 -1.6 putative Phage tail protein compare
PP_4301 -0.8 -1.6 Pyruvate kinase compare
PP_3926 -0.8 -1.0 short-chain dehydrogenase compare
PP_4358 -0.8 -3.8 flagellar synthesis, switching and energizing component compare
PP_5028 -0.8 -1.8 proline iminopeptidase compare
PP_3903 -0.8 -1.6 conserved protein of unknown function compare
PP_4391 -0.8 -2.6 flagellar basal-body rod protein FlgB compare
PP_4561 -0.8 -0.9 stress response protein compare
PP_1813 -0.8 -1.7 ComEA-related protein compare
PP_2060 -0.8 -1.7 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_5007 -0.7 -1.1 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4359 -0.7 -4.4 Flagellar protein FliL compare
PP_4388 -0.7 -5.2 Flagellar hook protein FlgE compare
PP_4859 -0.7 -1.9 Transcriptional regulator, TetR family compare
PP_4375 -0.7 -3.3 flagellar chaperone, inhibits premature FliC assembly compare
PP_3808 -0.7 -1.4 Antibiotic synthesis protein MbtH compare
PP_1451 -0.7 -2.8 conserved exported protein of unknown function compare
PP_4396 -0.7 -1.6 conserved protein of unknown function compare
PP_5583 -0.7 -0.9 conserved protein of unknown function compare
PP_4738 -0.7 -1.8 conserved exported protein of unknown function compare
PP_3902 -0.7 -1.7 conserved protein of unknown function compare
PP_5571 -0.7 -0.9 conserved protein of unknown function compare
PP_4268 -0.7 -0.9 nucleoid-associated broad specificity regulator compare
PP_4366 -0.7 -4.6 flagellum-specific ATP synthase compare
PP_4129 -0.7 -1.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2402 -0.7 -0.8 putative Sensor histidine kinase compare
PP_4370 -0.7 -2.2 Flagellar hook-basal body complex protein FliE compare
PP_2497 -0.7 -1.1 conserved protein of unknown function compare
PP_4383 -0.7 -1.6 Flagellar P-ring protein compare
PP_4904 -0.7 -3.2 Flagellar motor rotation protein compare
PP_2700 -0.7 -1.2 AhpC/TSA family protein compare
PP_3953 -0.7 -4.1 potassium transporter compare
PP_3005 -0.7 -2.9 conserved protein of unknown function compare
PP_0494 -0.7 -3.8 selenocysteyl-tRNA-specific translation elongation factor compare
PP_5701 -0.7 -0.6 conserved protein of unknown function compare
PP_3474 -0.7 -1.9 putative Curli fiber protein CsgE compare
PP_2955 -0.7 -2.7 Magnesium/cobalt transporter, CorA family compare
PP_0621 -0.6 -1.4 conserved protein of unknown function compare
PP_3105 -0.6 -1.1 conserved membrane protein of unknown function compare
PP_2740 -0.6 -1.4 Transcriptional regulator, MerR family compare
PP_0781 -0.6 -2.2 conserved protein of unknown function compare
PP_1114 -0.6 -1.8 SEC-C domain protein compare
PP_5093 -0.6 -1.0 twitching motility protein compare
PP_2222 -0.6 -1.9 conserved protein of unknown function compare
PP_4529 -0.6 -2.4 conserved protein of unknown function compare
PP_0425 -0.6 -1.5 conserved protein of unknown function compare
PP_2813 -0.6 -1.2 BNR domain protein compare
PP_2756 -0.6 -0.9 conserved protein of unknown function compare
PP_4386 -0.6 -2.3 flagellar basal-body rod protein FlgF compare
PP_1397 -0.6 -1.5 conserved protein of unknown function compare
PP_3346 -0.6 -1.7 Nickel transporter ATP-binding protein compare
PP_4787 -0.6 -1.0 putative protein with nucleoside triphosphate hydrolase domain compare
PP_5225 -0.6 -1.0 frataxin compare
PP_0164 -0.6 -2.6 conserved protein of unknown function compare
PP_4905 -0.6 -2.8 Flagellar motor rotation protein compare
PP_3488 -0.6 -1.5 Sco1/SenC family protein compare
PP_0682 -0.6 -1.9 conserved inner membrane protein of unknown function, UPF0114 family compare
PP_0962 -0.6 -0.8 toluene-tolerance protein compare
PP_4379 -0.6 -1.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0869 -0.6 -1.9 osmoprotectant ABC transporter permease subunit compare
PP_4424 -0.6 -1.7 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_0232 -0.6 -0.9 ATP-binding taurine transporter subunit compare
PP_4938 -0.6 -3.3 putative Glycosyl transferase compare
PP_2153 -0.6 -1.4 conserved protein of unknown function compare
PP_0345 -0.6 -1.0 putative Heptose kinase WapP compare
PP_5505 -0.6 -1.1 conserved transmembrane protein of unknown function compare
PP_4988 -0.6 -1.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1836 -0.6 -1.3 putative metal transporter, ZIP family compare
PP_3398 -0.6 -1.5 putative Curli fiber surface-exposed nucleator CsgB compare
PP_3871 -0.6 -2.6 conserved protein of unknown function compare
PP_2658 -0.6 -1.0 phosphate ABC transporter compare
PP_4143 -0.6 -1.2 conserved protein of unknown function compare
PP_5491 -0.6 -0.7 conserved protein of unknown function with SEC-C motif domain compare
PP_0274 -0.6 -1.1 putative transcriptional regulator containing HTH domain compare
PP_3730 -0.6 -1.3 Transcriptional regulatory protein AruR compare
PP_5008 -0.6 -0.9 Poly granule-associated protein compare
PP_2766 -0.6 -2.3 Long-chain-fatty-acid--CoA ligase-related protein compare
PP_1733 -0.6 -0.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_5478 -0.6 -2.1 conserved protein of unknown function compare
PP_2192 -0.6 -1.7 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein compare
PP_1834 -0.6 -1.6 conserved protein of unknown function compare
PP_4691 -0.6 -1.9 sugar fermentation stimulation protein A compare
PP_2289 -0.6 -2.0 conserved exported protein of unknown function compare
PP_5452 -0.6 -2.1 protein of unknown function compare
PP_5267 -0.6 -1.5 putative cytochrome c5 compare
PP_4253 -0.6 -1.0 cytochrome c oxidase subunit, cbb3-type compare
PP_5698 -0.6 -1.9 conserved exported protein of unknown function compare
PP_0421 -0.5 -2.9 Anthranilate phosphoribosyltransferase compare
PP_2281 -0.5 -1.2 putative Capsid assembly protein compare
PP_2919 -0.5 -2.1 Transcriptional regulator, LysR family compare
PP_1938 -0.5 -1.4 conserved protein of unknown function compare
PP_5274 -0.5 -1.0 conserved protein of unknown function compare
PP_3916 -0.5 -1.5 conserved protein of unknown function compare
PP_0831 -0.5 -1.8 hypothetical protein compare
PP_1366 -0.5 -0.6 Transcriptional regulator MvaT, P16 subunit compare
PP_5099 -0.5 -1.9 conserved protein of unknown function compare
PP_2074 -0.5 -1.8 Transcriptional regulator, LysR family compare
PP_5520 -0.5 -1.5 conserved protein of unknown function compare
PP_4690 -0.5 -1.4 Rieske 2Fe-2S family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in time series experiments

For time series D-Glucose across organisms