Experiment set32IT059 for Pseudomonas putida KT2440

Compare to:

Timeseries; MAX condition; Bioreplicate 1; Time 5hrs; Measurement replicate 3

200 most important genes:

  gene name fitness t score description  
PP_4724 -3.5 -3.4 Carbamoyl-phosphate synthase small chain compare
PP_4723 -3.5 -6.7 Carbamoyl-phosphate synthase large chain compare
PP_2378 -3.2 -4.4 Fe/S biogenesis protein NfuA compare
PP_1664 -3.1 -5.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_0393 -3.0 -3.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4999 -2.9 -2.0 dihydroorotase-like protein compare
PP_1898 -2.7 -2.6 MotA/TolQ/ExbB proton channel family protein compare
PP_4561 -2.6 -2.0 stress response protein compare
PP_5329 -2.4 -2.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3999 -2.4 -7.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1237 -2.3 -3.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4008 -2.1 -4.3 ATP-dependent serine protease compare
PP_1654 -2.1 -5.4 cysteine synthase B compare
PP_4997 -2.1 -2.9 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3903 -1.9 -3.2 conserved protein of unknown function compare
PP_1734 -1.8 -4.3 Probable septum site-determining protein MinC compare
PP_5328 -1.8 -2.5 putative phosphate transport system permease protein compare
PP_5155 -1.7 -5.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0065 -1.7 -2.9 NAD-binding component of TrK potassium transporter compare
PP_0735 -1.6 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_0833 -1.6 -1.6 queuine tRNA-ribosyltransferase compare
PP_4994 -1.6 -2.8 conserved protein of unknown function compare
PP_4909 -1.6 -5.7 phosphoserine phosphatase compare
PP_0339 -1.5 -3.5 Pyruvate dehydrogenase E1 component compare
PP_5705 -1.5 -1.6 protein of unknown function compare
PP_4895 -1.5 -2.9 tRNA dimethylallyltransferase compare
PP_2328 -1.4 -4.0 Phosphoadenosine phosphosulfate reductase compare
PP_5508 -1.4 -1.7 conserved protein of unknown function compare
PP_4835 -1.4 -2.6 conserved exported protein of unknown function compare
PP_4130 -1.3 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4546 -1.3 -3.4 ATP-dependent helicase HrpA compare
PP_5604 -1.2 -2.4 putative subtilisin-like serine protease compare
PP_0435 -1.2 -3.8 Peptidase, M23/M37 family compare
PP_2581 -1.1 -1.1 conserved protein of unknown function compare
PP_5027 -1.1 -1.9 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0959 -1.1 -1.9 phospholipid ABC transporter compare
PP_2402 -1.1 -1.5 putative Sensor histidine kinase compare
PP_5327 -1.1 -2.7 putative phosphate ABC transporter, permease subunit compare
PP_3411 -1.0 -1.9 conserved protein of unknown function compare
PP_4693 -1.0 -3.2 RNA polymerase-binding transcription factor DksA compare
PP_5248 -1.0 -1.5 putative hydrolase compare
PP_0691 -1.0 -1.5 Glutamate 5-kinase compare
PP_4942 -1.0 -1.4 conserved protein of unknown function compare
PP_4355 -1.0 -1.2 flagellar export apparatus subunit compare
PP_4988 -1.0 -3.4 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1198 -1.0 -2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5717 -1.0 -2.5 conserved protein of unknown function compare
PP_2499 -1.0 -1.7 conserved protein of unknown function compare
PP_0083 -0.9 -3.5 tryptophan synthase beta chain compare
PP_5500 -0.9 -3.0 protein of unknown function compare
PP_5580 -0.9 -2.0 protein of unknown function compare
PP_1233 -0.9 -2.5 sulfurtransferase compare
PP_1217 -0.9 -2.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2000 -0.9 -0.9 amidophosphoribosyl transferase compare
PP_4124 -0.9 -2.5 NADH-quinone oxidoreductase subunit G compare
PP_0434 -0.9 -2.6 Anhydro-N-acetylmuramic acid kinase compare
PP_t12 -0.9 -1.0 tRNA-Thr compare
PP_3328 -0.9 -1.9 putative Ring-cleaving dioxygenase compare
PP_1912 -0.9 -2.6 Phosphate acyltransferase compare
PP_4937 -0.9 -1.4 toluene tolerance protein compare
PP_5748 -0.9 -1.4 cytochrome c heme lyase subunit compare
PP_3116 -0.8 -3.0 transcriptional repressor compare
PP_0421 -0.8 -3.9 Anthranilate phosphoribosyltransferase compare
PP_0809 -0.8 -4.5 disulfide bond formation protein B compare
PP_4880 -0.8 -3.9 exoribonuclease R compare
PP_4785 -0.8 -3.0 conserved exported protein of unknown function compare
PP_2336 -0.8 -1.8 aconitate hydratase 1 compare
PP_5039 -0.8 -1.7 conserved protein of unknown function compare
PP_5558 -0.8 -2.8 putative transcriptional xre family of phage origin compare
PP_2370 -0.8 -1.5 conserved protein of unknown function compare
PP_1935 -0.8 -1.6 Transcriptional regulator, Cro/CI family compare
PP_4726 -0.8 -2.2 Chaperone protein DnaJ compare
PP_3808 -0.8 -0.9 Antibiotic synthesis protein MbtH compare
PP_1430 -0.8 -4.1 putative periplasmic serine endoprotease DegP-like compare
PP_2371 -0.8 -2.6 Sulphite reductase hemoprotein, beta subunit compare
PP_2568 -0.8 -1.2 Ring-cleaving dioxygenase compare
PP_3307 -0.8 -1.2 conserved protein of unknown function compare
PP_4271 -0.8 -0.9 conserved protein of unknown function compare
PP_0082 -0.7 -2.4 tryptophan synthase alpha chain compare
PP_2152 -0.7 -1.7 glycerophosphoryl diester phosphodiesterase compare
PP_1568 -0.7 -1.1 conserved protein of unknown function compare
PP_0246 -0.7 -1.6 two-component system DNA-binding response transcriptional dual regulator compare
PP_2648 -0.7 -2.6 Universal stress protein family compare
PP_0420 -0.7 -3.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5051 -0.7 -1.2 conserved protein of unknown function compare
PP_4004 -0.7 -1.5 DNA translocase FtsK compare
PP_4804 -0.7 -1.4 RlpA-like lipoprotein compare
PP_1344 -0.7 -0.9 conserved protein of unknown function compare
PP_5502 -0.7 -2.8 ribosome modulation factor compare
PP_1410 -0.7 -1.1 conserved protein of unknown function compare
PP_3048 -0.7 -1.4 conserved protein of unknown function compare
PP_2857 -0.7 -1.8 conserved exported protein of unknown function compare
PP_4240 -0.7 -3.1 putative Microcin b17 processing protein mcbd compare
PP_5216 -0.7 -1.1 exopolyphosphatase compare
PP_3043 -0.7 -1.2 conserved protein of unknown function compare
PP_5267 -0.7 -1.7 putative cytochrome c5 compare
PP_0417 -0.7 -5.1 Anthranilate synthase component 1 compare
PP_5338 -0.7 -1.2 aspartate ammonia-lyase compare
PP_1224 -0.7 -2.6 periplasmic subunit of the TolQRA transport system compare
PP_3539 -0.7 -1.4 putative Transcriptional regulator compare
PP_2451 -0.7 -4.0 extracellular DNA endonuclease compare
PP_0406 -0.6 -1.0 Nucleotidyltransferase family protein compare
PP_3392 -0.6 -1.2 conserved protein of unknown function compare
PP_0832 -0.6 -2.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5350 -0.6 -1.7 Transcriptional regulator, RpiR family compare
PP_1554 -0.6 -1.9 conserved protein of unknown function compare
PP_2309 -0.6 -0.9 conserved protein of unknown function compare
PP_5000 -0.6 -0.8 peptidase component of the ATP-dependent HslVU protease compare
PP_1348 -0.6 -2.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4126 -0.6 -0.9 NADH-quinone oxidoreductase subunit I compare
PP_5083 -0.6 -2.4 putative Type IV pili biogenesis protein PilM compare
PP_0377 -0.6 -0.8 coenzyme PQQ synthesis protein D compare
PP_5202 -0.6 -2.1 putative cell division protein compare
PP_5652 -0.6 -1.2 conserved protein of unknown function, phage origin compare
PP_4504 -0.6 -0.8 conserved exported protein of unknown function compare
PP_1941 -0.6 -2.5 conserved protein of unknown function compare
PP_0513 -0.6 -0.8 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4109 -0.6 -1.3 conserved protein of unknown function compare
PP_5104 -0.6 -3.0 thiazole synthase compare
PP_1534 -0.6 -2.8 conserved protein of unknown function compare
PP_4379 -0.6 -1.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0422 -0.6 -2.2 Indole-3-glycerol phosphate synthase compare
PP_3861 -0.6 -1.7 Phage FluMu protein gp46 compare
PP_5666 -0.6 -2.2 putative microcin B17-like processing protein, McbB family compare
PP_4122 -0.6 -0.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3738 -0.6 -2.3 putative Transcriptional regulator VanR compare
PP_4824 -0.6 -2.2 Sensor histidine kinase/response regulator compare
PP_3014 -0.6 -2.1 conserved exported protein of unknown function compare
PP_3729 -0.6 -2.0 Periplasmic amino acid-binding protein-related protein compare
PP_4902 -0.6 -1.5 Oligoribonuclease compare
PP_2781 -0.6 -3.4 putative beta-ketoacyl synthase compare
PP_1128 -0.6 -1.9 OmpA family protein compare
PP_4204 -0.6 -1.6 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4131 -0.6 -2.1 NADH-quinone oxidoreductase subunit N compare
PP_5639 -0.6 -3.8 conserved exported protein of unknown function compare
PP_0405 -0.6 -2.6 conserved protein of unknown function compare
PP_4560 -0.6 -1.7 putative Ribonuclease BN compare
PP_1096 -0.5 -1.5 putative electron transport complex protein compare
PP_t64 -0.5 -1.8 tRNA-Gly compare
PP_3506 -0.5 -1.4 Magnesium chelatase, subunit ChII compare
PP_4627 -0.5 -1.9 transcriptional regulator, LysR family compare
PP_3460 -0.5 -1.7 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_5045 -0.5 -1.9 tRNA sulfurtransferase compare
PP_2633 -0.5 -0.9 conserved protein of unknown function compare
PP_1124 -0.5 -1.0 conserved membrane protein of unknown function compare
PP_1428 -0.5 -1.2 Sigma factor AlgU negative regulatory protein compare
PP_5589 -0.5 -1.3 protein of unknown function containing Rhs repeat-associated core domain compare
PP_1142 -0.5 -0.8 conserved protein of unknown function compare
PP_0750 -0.5 -2.2 conserved protein of unknown function compare
PP_0035 -0.5 -1.3 putative bactoprenol-linked glycose transferase compare
PP_5230 -0.5 -1.3 Tyrosine recombinase XerC compare
PP_0949 -0.5 -2.5 putative ATP-binding protein UPF0042 compare
PP_1731 -0.5 -2.0 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_4936 -0.5 -3.0 O-antigen polymerase compare
PP_0086 -0.5 -1.7 conserved protein of unknown function compare
PP_3835 -0.5 -1.9 Sensory box histidine kinase compare
PP_4120 -0.5 -1.3 NADH-quinone oxidoreductase subunit B compare
PP_3052 -0.5 -0.8 conserved protein of unknown function compare
PP_3679 -0.5 -2.3 conserved protein of unknown function compare
PP_1045 -0.5 -1.2 Type II secretion pathway protein XcpP compare
PP_5236 -0.5 -2.9 conserved protein of unknown function compare
PP_5610 -0.5 -1.2 protein of unknown function compare
PP_0694 -0.5 -2.1 conserved protein of unknown function compare
PP_3434 -0.5 -0.9 conserved protein of unknown function compare
PP_4223 -0.5 -1.1 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1629 -0.5 -2.0 Protein RecA compare
PP_1738 -0.5 -3.3 conserved exported protein of unknown function compare
PP_2475 -0.5 -1.8 Transcriptional regulator, TetR family compare
PP_5014 -0.5 -1.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_2540 -0.5 -1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4555 -0.5 -1.2 conserved protein of unknown function compare
PP_5232 -0.5 -1.1 conserved protein of unknown function compare
PP_1535 -0.5 -1.8 putative Methyltransferase compare
PP_4208 -0.5 -2.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_5505 -0.5 -1.6 conserved transmembrane protein of unknown function compare
PP_0673 -0.5 -1.2 conserved protein of unknown function compare
PP_5339 -0.5 -1.5 transcriptional regulator, ornithine utilization compare
PP_0630 -0.5 -0.8 DNA gyrase inhibitor YacG compare
PP_0261 -0.5 -2.1 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1355 -0.5 -2.3 Muropeptide permease AmpG compare
PP_5507 -0.5 -1.8 protein of unknown function compare
PP_1536 -0.5 -1.0 conserved protein of unknown function compare
PP_3765 -0.5 -1.6 H-NS family protein MvaT compare
PP_2737 -0.5 -1.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2960 -0.5 -1.6 transcriptional regulator, AraC family compare
PP_2031 -0.5 -1.2 conserved protein of unknown function compare
PP_0306 -0.5 -0.8 conserved protein of unknown function compare
PP_5478 -0.5 -2.2 conserved protein of unknown function compare
PP_4532 -0.5 -1.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1737 -0.5 -3.1 conserved protein of unknown function compare
PP_4341 -0.5 -2.3 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_5391 -0.5 -2.2 conserved hypothetical protein compare
PP_0153 -0.5 -1.1 hypothetical protein compare
PP_4811 -0.4 -1.2 Gamma-glutamyl phosphate reductase compare
PP_2729 -0.4 -2.1 conserved protein of unknown function compare
PP_4701 -0.4 -0.6 glucose-6-phosphate isomerase compare
PP_2060 -0.4 -0.5 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_5698 -0.4 -1.3 conserved exported protein of unknown function compare
PP_3917 -0.4 -1.5 conserved protein of unknown function compare
PP_0781 -0.4 -1.6 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in time series experiments

For time series D-Glucose across organisms