Experiment set32IT058 for Pseudomonas putida KT2440

Compare to:

Timeseries; NC condition; Bioreplicate 1; Time 5hrs; Measurement replicate 2

200 most important genes:

  gene name fitness t score description  
PP_1215 -3.9 -2.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_4723 -3.5 -5.8 Carbamoyl-phosphate synthase large chain compare
PP_4724 -3.1 -3.7 Carbamoyl-phosphate synthase small chain compare
PP_4999 -2.7 -1.8 dihydroorotase-like protein compare
PP_1237 -2.7 -3.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0691 -2.6 -1.8 Glutamate 5-kinase compare
PP_4895 -2.6 -3.1 tRNA dimethylallyltransferase compare
PP_1734 -2.0 -4.1 Probable septum site-determining protein MinC compare
PP_0339 -2.0 -3.8 Pyruvate dehydrogenase E1 component compare
PP_1654 -2.0 -3.9 cysteine synthase B compare
PP_0293 -2.0 -2.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1664 -1.9 -2.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_4126 -1.8 -2.4 NADH-quinone oxidoreductase subunit I compare
PP_0063 -1.6 -3.7 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0435 -1.6 -4.5 Peptidase, M23/M37 family compare
PP_4936 -1.6 -6.9 O-antigen polymerase compare
PP_4994 -1.5 -2.5 conserved protein of unknown function compare
PP_4804 -1.5 -3.3 RlpA-like lipoprotein compare
PP_0719 -1.4 -1.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0673 -1.4 -3.3 conserved protein of unknown function compare
PP_1216 -1.4 -2.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1764 -1.3 -2.5 Phosphoglycolate phosphatase 2 compare
PP_4045 -1.3 -2.4 conserved protein of unknown function compare
PP_2328 -1.3 -3.9 Phosphoadenosine phosphosulfate reductase compare
PP_1493 -1.3 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3105 -1.3 -1.3 conserved membrane protein of unknown function compare
PP_4098 -1.2 -1.2 UvrABC system protein C compare
PP_4909 -1.2 -3.7 phosphoserine phosphatase compare
PP_5241 -1.2 -1.6 DNA-binding response regulator, LuxR family compare
PP_0164 -1.2 -3.9 conserved protein of unknown function compare
PP_4940 -1.1 -4.8 Putative glycosyltransferase compare
PP_4943 -1.1 -1.9 putative Glycosyl transferase compare
PP_5393 -1.0 -1.8 putative metal-binding chaperone compare
PP_5090 -1.0 -2.8 putative cell division protein compare
PP_5508 -1.0 -1.6 conserved protein of unknown function compare
PP_0406 -1.0 -1.9 Nucleotidyltransferase family protein compare
PP_1261 -1.0 -2.5 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_0833 -1.0 -1.1 queuine tRNA-ribosyltransferase compare
PP_5448 -1.0 -2.7 conserved protein of unknown function compare
PP_5505 -1.0 -2.5 conserved transmembrane protein of unknown function compare
PP_1293 -1.0 -2.0 molybdopterin synthase small subunit compare
PP_4902 -0.9 -3.0 Oligoribonuclease compare
PP_4696 -0.9 -4.1 Nitrogen regulation protein NR(I) compare
PP_0393 -0.9 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0959 -0.9 -1.6 phospholipid ABC transporter compare
PP_4938 -0.9 -5.0 putative Glycosyl transferase compare
PP_4342 -0.9 -2.3 flagellar synthesis regulator, putative ATPase compare
PP_3265 -0.9 -2.2 putative phosphohydrolase of unknown function compare
PP_0440 -0.9 -3.1 Elongation factor Tu-A compare
PP_3766 -0.9 -2.7 Lactoylglutathione lyase compare
PP_1898 -0.9 -0.8 MotA/TolQ/ExbB proton channel family protein compare
PP_5329 -0.9 -1.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1008 -0.8 -2.0 RNA polymerase subunit sigma-24 compare
PP_2000 -0.8 -0.8 amidophosphoribosyl transferase compare
PP_0781 -0.8 -2.3 conserved protein of unknown function compare
PP_2592 -0.8 -3.3 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_0319 -0.8 -1.6 conserved protein of unknown function compare
PP_0040 -0.8 -2.0 hypothetical protein compare
PP_2899 -0.8 -0.9 conserved exported protein of unknown function compare
PP_5546 -0.8 -1.2 conserved protein of unknown function compare
PP_2313 -0.8 -1.8 conserved membrane protein of unknown function compare
PP_4561 -0.8 -1.1 stress response protein compare
PP_3999 -0.8 -3.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5582 -0.8 -1.3 conserved protein of unknown function compare
PP_5155 -0.8 -3.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1217 -0.8 -1.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4814 -0.8 -2.4 ATP-dependent protease La domain protein compare
PP_2370 -0.8 -1.1 conserved protein of unknown function compare
PP_0508 -0.8 -2.2 conserved exported protein of unknown function compare
PP_4937 -0.8 -1.9 toluene tolerance protein compare
PP_2947 -0.7 -2.3 putative Transcriptional regulator MvaT, P16 subunit compare
PP_5317 -0.7 -1.8 Probable chorismate pyruvate-lyase compare
PP_3729 -0.7 -2.8 Periplasmic amino acid-binding protein-related protein compare
PP_0232 -0.7 -1.2 ATP-binding taurine transporter subunit compare
PP_2302 -0.7 -2.4 DNA-binding, ATP-dependent protease compare
PP_5107 -0.7 -2.1 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_1999 -0.7 -1.6 membrane protein required for colicin V production compare
PP_1198 -0.7 -1.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2189 -0.7 -2.4 conserved protein of unknown function compare
PP_5479 -0.7 -3.7 transcriptional regulator HTH, LysR family compare
PP_1224 -0.7 -3.9 periplasmic subunit of the TolQRA transport system compare
PP_0513 -0.7 -1.8 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1430 -0.7 -4.1 putative periplasmic serine endoprotease DegP-like compare
PP_4133 -0.7 -1.5 Transcriptional regulator-related protein compare
PP_0888 -0.7 -0.9 Photosynthetic apparatus regulatory protein RegA compare
PP_0434 -0.7 -2.3 Anhydro-N-acetylmuramic acid kinase compare
PP_3241 -0.6 -1.0 conserved exported protein of unknown function compare
PP_0703 -0.6 -2.7 putative Transmembrane sensor compare
PP_4124 -0.6 -2.3 NADH-quinone oxidoreductase subunit G compare
PP_4989 -0.6 -1.8 Protein PilJ compare
PP_4254 -0.6 -1.0 conserved protein of unknown function compare
PP_1489 -0.6 -2.3 CheW domain protein compare
PP_0276 -0.6 -1.0 Transcriptional regulator, Cro/CI family compare
PP_1410 -0.6 -1.1 conserved protein of unknown function compare
PP_3365 -0.6 -1.1 Acetolactate synthase compare
PP_1454 -0.6 -1.7 conserved protein of unknown function compare
PP_3318 -0.6 -1.6 conserved protein of unknown function compare
PP_5453 -0.6 -1.4 conserved protein of unknown function compare
PP_4824 -0.6 -2.4 Sensor histidine kinase/response regulator compare
PP_1935 -0.6 -1.7 Transcriptional regulator, Cro/CI family compare
PP_3924 -0.6 -1.6 conserved protein of unknown function compare
PP_1269 -0.6 -0.9 Universal stress protein family compare
PP_5488 -0.6 -2.8 conserved protein of unknown function compare
PP_5717 -0.6 -1.8 conserved protein of unknown function compare
PP_1733 -0.6 -0.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_3539 -0.6 -2.0 putative Transcriptional regulator compare
PP_3398 -0.6 -1.2 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1048 -0.6 -1.3 putative protein secretion protein for export compare
PP_5030 -0.6 -3.0 Imidazolonepropionase compare
PP_2191 -0.5 -2.1 putative Lipoprotein compare
PP_5191 -0.5 -1.3 conserved exported protein of unknown function compare
PP_2725 -0.5 -2.0 Protease PfpI compare
PP_5487 -0.5 -2.0 conserved protein of unknown function compare
PP_1428 -0.5 -1.7 Sigma factor AlgU negative regulatory protein compare
PP_4121 -0.5 -1.7 NADH-quinone oxidoreductase subunit C/D compare
PP_4504 -0.5 -0.5 conserved exported protein of unknown function compare
PP_5202 -0.5 -1.0 putative cell division protein compare
PP_4701 -0.5 -0.7 glucose-6-phosphate isomerase compare
PP_1214 -0.5 -1.0 putative transcriptional regulatory protein compare
PP_2433 -0.5 -1.0 conserved protein of unknown function compare
PP_3757 -0.5 -1.8 Chemotaxis protein CheY compare
PP_5022 -0.5 -1.0 Glutamine transport ATP-binding protein GlnQ compare
PP_0405 -0.5 -2.5 conserved protein of unknown function compare
PP_2371 -0.5 -2.5 Sulphite reductase hemoprotein, beta subunit compare
PP_0190 -0.5 -2.1 putative disulfide bond formation protein B compare
PP_4835 -0.5 -1.8 conserved exported protein of unknown function compare
PP_5441 -0.5 -1.2 protein of unknown function compare
PP_4720 -0.5 -1.2 putative RNA binding protein compare
PP_5568 -0.5 -2.6 conserved membrane protein of unknown function compare
PP_5027 -0.5 -1.0 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1729 -0.5 -1.0 conserved protein of unknown function compare
PP_3938 -0.5 -1.3 conserved protein of unknown function compare
PP_1022 -0.5 -1.8 glucose 6-phosphate-1-dehydrogenase compare
PP_4426 -0.5 -2.0 Amino acid ABC transporter, permease protein compare
PP_5473 -0.5 -0.7 putative transcriptional regulator, LuxR family compare
PP_2442 -0.5 -1.2 conserved protein of unknown function, DUF480 family compare
PP_3136 -0.5 -2.0 putative O-acetyltransferase compare
PP_2511 -0.5 -1.4 conserved protein of unknown function compare
PP_1575 -0.5 -1.2 conserved protein of unknown function compare
PP_1845 -0.5 -1.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_1468 -0.5 -1.2 Tyrosine recombinase XerD compare
PP_2159 -0.5 -2.0 Copper-binding protein, plastocyanin/azurin family compare
PP_4120 -0.5 -1.1 NADH-quinone oxidoreductase subunit B compare
PP_2878 -0.5 -0.8 conserved protein of unknown function compare
PP_2429 -0.5 -1.3 putative Membrane protein compare
PP_2451 -0.5 -3.3 extracellular DNA endonuclease compare
PP_3061 -0.5 -1.3 conserved protein of unknown function compare
PP_2863 -0.5 -1.6 conserved membrane protein of unknown function compare
PP_0957 -0.5 -1.2 D-arabinose 5-phosphate isomerase compare
PP_4367 -0.5 -1.4 Flagellar assembly protein FliH compare
PP_4693 -0.5 -1.8 RNA polymerase-binding transcription factor DksA compare
PP_5609 -0.5 -1.8 conserved protein of unknown function compare
PP_2854 -0.5 -2.1 conserved exported protein of unknown function compare
PP_5104 -0.5 -2.8 thiazole synthase compare
PP_2557 -0.5 -2.2 Sensory box protein compare
PP_5711 -0.5 -1.6 protein of unknown function compare
PP_5223 -0.5 -2.1 regulator of nucleotide diphosphokinase compare
PP_1947 -0.4 -2.4 conserved protein of unknown function compare
PP_1632 -0.4 -0.9 conserved protein of unknown function compare
PP_4337 -0.4 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4880 -0.4 -2.5 exoribonuclease R compare
PP_0007 -0.4 -1.5 conserved hypothetical protein compare
PP_0566 -0.4 -0.7 translation-related factor compare
PP_0878 -0.4 -2.2 dipeptide ABC transporter, binding subunit compare
PP_4904 -0.4 -2.9 Flagellar motor rotation protein compare
PP_3337 -0.4 -2.2 conserved membrane protein of unknown function compare
PP_5600 -0.4 -1.4 conserved protein of unknown function compare
PP_2197 -0.4 -1.5 conserved exported protein of unknown function compare
PP_4910 -0.4 -1.0 conserved protein of unknown function compare
PP_0127 -0.4 -1.2 Thiol:disulfide interchange protein compare
PP_3247 -0.4 -1.9 Transporter, bile acid/Na+ symporter family compare
PP_3226 -0.4 -2.3 Acyl-CoA dehydrogenase-related protein compare
PP_3102 -0.4 -1.3 conserved protein of unknown function compare
PP_4377 -0.4 -1.9 putative Flagellin FlaG compare
PP_0575 -0.4 -1.5 conserved membrane protein of unknown function compare
PP_1647 -0.4 -1.4 conserved protein of unknown function compare
PP_1742 -0.4 -1.7 conserved inner membrane protein of unknown function compare
PP_2077 -0.4 -2.3 diaminopimelate decarboxylase compare
PP_0289 -0.4 -2.1 Imidazoleglycerol-phosphate dehydratase compare
PP_0846 -0.4 -0.6 DnaK-like molecular chaperone specific for IscU compare
PP_4629 -0.4 -2.2 Sensory box protein compare
PP_4365 -0.4 -2.3 Flagellar protein FliJ compare
PP_4129 -0.4 -1.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4008 -0.4 -1.3 ATP-dependent serine protease compare
PP_2841 -0.4 -2.3 Site-specific recombinase, phage integrase family compare
PP_5586 -0.4 -1.8 exported protein of unknown function compare
PP_5723 -0.4 -2.2 protein of unknown function compare
PP_2602 -0.4 -1.7 putative 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase compare
PP_0048 -0.4 -0.8 conserved protein of unknown function compare
PP_1783 -0.4 -0.8 dTDP-glucose pyrophosphorylase compare
PP_3899 -0.4 -1.2 conserved protein of unknown function, hicB family compare
PP_5028 -0.4 -1.0 proline iminopeptidase compare
PP_1737 -0.4 -2.9 conserved protein of unknown function compare
PP_0809 -0.4 -2.4 disulfide bond formation protein B compare
PP_4353 -0.4 -2.0 Flagellar biosynthetic protein fliR compare
PP_0832 -0.4 -1.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2655 -0.4 -1.5 conserved protein of unknown function compare
PP_4503 -0.4 -1.5 DNA-binding response regulator compare
PP_5475 -0.4 -0.8 conserved protein of unknown function compare
PP_5095 -0.4 -0.6 pyrroline-5-carboxylate reductase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in time series experiments

For time series D-Glucose across organisms