Experiment set32IT055 for Pseudomonas putida KT2440

Compare to:

Timeseries; NC condition; Bioreplicate 1; Time 5hrs; Measurement replicate 1

200 most important genes:

  gene name fitness t score description  
PP_4723 -3.4 -7.5 Carbamoyl-phosphate synthase large chain compare
PP_4724 -3.2 -3.8 Carbamoyl-phosphate synthase small chain compare
PP_4999 -2.8 -2.0 dihydroorotase-like protein compare
PP_0691 -2.1 -2.0 Glutamate 5-kinase compare
PP_1237 -1.9 -2.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0406 -1.9 -3.6 Nucleotidyltransferase family protein compare
PP_0719 -1.9 -2.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4936 -1.8 -8.9 O-antigen polymerase compare
PP_4940 -1.6 -6.8 Putative glycosyltransferase compare
PP_0339 -1.5 -3.6 Pyruvate dehydrogenase E1 component compare
PP_4943 -1.4 -2.5 putative Glycosyl transferase compare
PP_1734 -1.3 -2.8 Probable septum site-determining protein MinC compare
PP_2000 -1.3 -0.9 amidophosphoribosyl transferase compare
PP_2414 -1.1 -2.0 conserved exported protein of unknown function compare
PP_0833 -1.1 -1.3 queuine tRNA-ribosyltransferase compare
PP_4696 -1.1 -4.7 Nitrogen regulation protein NR(I) compare
PP_0393 -1.0 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4938 -1.0 -6.3 putative Glycosyl transferase compare
PP_0087 -1.0 -2.8 conserved exported protein of unknown function compare
PP_2402 -1.0 -1.8 putative Sensor histidine kinase compare
PP_0888 -1.0 -1.4 Photosynthetic apparatus regulatory protein RegA compare
PP_2337 -1.0 -1.5 aconitate isomerase compare
PP_4396 -1.0 -4.2 conserved protein of unknown function compare
PP_2328 -0.9 -4.6 Phosphoadenosine phosphosulfate reductase compare
PP_1489 -0.9 -2.4 CheW domain protein compare
PP_4379 -0.9 -2.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2217 -0.9 -2.4 enoyl-CoA hydratase compare
PP_2302 -0.9 -2.5 DNA-binding, ATP-dependent protease compare
PP_0164 -0.9 -4.4 conserved protein of unknown function compare
PP_4546 -0.9 -2.7 ATP-dependent helicase HrpA compare
PP_4988 -0.9 -3.0 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_2740 -0.9 -1.8 Transcriptional regulator, MerR family compare
PP_1664 -0.8 -1.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_5717 -0.8 -2.6 conserved protein of unknown function compare
PP_2568 -0.8 -1.5 Ring-cleaving dioxygenase compare
PP_4910 -0.8 -2.3 conserved protein of unknown function compare
PP_5748 -0.8 -1.5 cytochrome c heme lyase subunit compare
PP_3532 -0.8 -1.8 Transcriptional regulator, AsnC family compare
PP_4120 -0.8 -2.3 NADH-quinone oxidoreductase subunit B compare
PP_4204 -0.8 -2.3 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1198 -0.8 -1.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0435 -0.8 -2.7 Peptidase, M23/M37 family compare
PP_4994 -0.8 -1.7 conserved protein of unknown function compare
PP_0048 -0.8 -1.4 conserved protein of unknown function compare
PP_1935 -0.7 -2.4 Transcriptional regulator, Cro/CI family compare
PP_2525 -0.7 -2.6 conserved protein of unknown function compare
PP_3480 -0.7 -3.0 conserved protein of unknown function compare
PP_5441 -0.7 -1.6 protein of unknown function compare
PP_1439 -0.7 -1.8 conserved exported protein of unknown function compare
PP_3999 -0.7 -2.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4136 -0.7 -0.7 Transcriptional regulator, LuxR family compare
PP_3098 -0.7 -1.1 conserved protein of unknown function compare
PP_5155 -0.7 -2.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4952 -0.7 -1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4909 -0.7 -2.9 phosphoserine phosphatase compare
PP_2999 -0.7 -1.3 Glyoxalase family protein compare
PP_4143 -0.7 -1.7 conserved protein of unknown function compare
PP_2088 -0.7 -2.4 RNA polymerase sigma factor SigX compare
PP_1654 -0.6 -2.4 cysteine synthase B compare
PP_1293 -0.6 -0.6 molybdopterin synthase small subunit compare
PP_2903 -0.6 -1.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_3539 -0.6 -2.0 putative Transcriptional regulator compare
PP_2387 -0.6 -2.1 conserved protein of unknown function compare
PP_1737 -0.6 -4.5 conserved protein of unknown function compare
PP_4693 -0.6 -3.0 RNA polymerase-binding transcription factor DksA compare
PP_3580 -0.6 -0.9 conserved protein of unknown function compare
PP_1214 -0.6 -1.1 putative transcriptional regulatory protein compare
PP_2417 -0.6 -2.3 putative Iron ABC transporter, permease protein compare
PP_5317 -0.6 -1.8 Probable chorismate pyruvate-lyase compare
PP_0182 -0.6 -2.6 conserved protein of unknown function compare
PP_4368 -0.6 -3.3 flagellar motor switch protein compare
PP_4212 -0.6 -3.0 pyoverdine biosynthesis related protein compare
PP_4268 -0.6 -0.9 nucleoid-associated broad specificity regulator compare
PP_4356 -0.6 -1.4 Flagellar protein FliO compare
PP_0809 -0.6 -3.6 disulfide bond formation protein B compare
PP_4829 -0.6 -1.4 putative precorrin-3B synthase compare
PP_5617 -0.6 -2.4 conserved protein of unknown function compare
PP_1842 -0.6 -3.1 Glutamine amidotransferase, class I compare
PP_0065 -0.6 -1.6 NAD-binding component of TrK potassium transporter compare
PP_4804 -0.5 -1.5 RlpA-like lipoprotein compare
PP_4645 -0.5 -2.2 Large-conductance mechanosensitive channel compare
PP_2145 -0.5 -1.0 beta-N-acetylglucosaminidase compare
PP_4837 -0.5 -1.8 conserved protein of unknown function compare
PP_2371 -0.5 -2.9 Sulphite reductase hemoprotein, beta subunit compare
PP_5084 -0.5 -3.4 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_2144 -0.5 -2.2 Transcriptional regulator, TetR family compare
PP_3392 -0.5 -1.1 conserved protein of unknown function compare
PP_5310 -0.5 -2.4 junction-specific ATP-dependent DNA helicase compare
PP_0703 -0.5 -2.3 putative Transmembrane sensor compare
PP_5329 -0.5 -1.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2181 -0.5 -1.9 Transcriptional regulator, Cro/CI family compare
PP_1048 -0.5 -1.6 putative protein secretion protein for export compare
PP_2070 -0.5 -1.3 Transcriptional regulator, AraC family compare
PP_1673 -0.5 -2.2 cobyrinate a,c-diamide synthase compare
PP_4895 -0.5 -1.2 tRNA dimethylallyltransferase compare
PP_1430 -0.5 -3.1 putative periplasmic serine endoprotease DegP-like compare
PP_2077 -0.5 -2.8 diaminopimelate decarboxylase compare
PP_0834 -0.5 -1.5 Sec translocation complex subunit YajC compare
PP_0405 -0.5 -2.8 conserved protein of unknown function compare
PP_2306 -0.5 -1.5 conserved exported protein of unknown function compare
PP_4211 -0.5 -2.8 outer membrane pyoverdine efflux protein compare
PP_2137 -0.5 -1.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_5583 -0.5 -1.4 conserved protein of unknown function compare
PP_1079 -0.5 -2.5 Ornithine carbamoyltransferase compare
PP_4358 -0.5 -3.0 flagellar synthesis, switching and energizing component compare
PP_4902 -0.5 -1.2 Oligoribonuclease compare
PP_2643 -0.5 -2.0 aromatic acid chemoreceptor compare
PP_4015 -0.5 -2.2 HflD-like high frequency lysogenization protein compare
PP_4509 -0.5 -2.3 conserved protein of unknown function compare
PP_0127 -0.5 -2.4 Thiol:disulfide interchange protein compare
PP_1178 -0.5 -1.5 conserved protein of unknown function compare
PP_5610 -0.5 -1.3 protein of unknown function compare
PP_4385 -0.5 -2.4 flagellar basal-body rod protein FlgG compare
PP_4126 -0.5 -0.9 NADH-quinone oxidoreductase subunit I compare
PP_3374 -0.5 -2.0 conserved protein of unknown function compare
PP_0547 -0.5 -2.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_3640 -0.5 -1.9 Transcriptional regulator, AraC family compare
PP_3204 -0.5 -1.6 conserved protein of unknown function compare
PP_3902 -0.4 -1.2 conserved protein of unknown function compare
PP_2452 -0.4 -2.2 conserved protein of unknown function compare
PP_3244 -0.4 -2.2 Magnesium transporter, MgtC family compare
PP_3307 -0.4 -0.8 conserved protein of unknown function compare
PP_5331 -0.4 -1.3 Long-chain acyl-CoA thioester hydrolase compare
PP_4069 -0.4 -1.2 conserved protein of unknown function compare
PP_4394 -0.4 -1.8 flagella basal body P-ring formation protein compare
PP_2672 -0.4 -2.0 Transcriptional activator protein ExaE compare
PP_1808 -0.4 -1.7 glucose-6-phosphate isomerase compare
PP_4365 -0.4 -2.0 Flagellar protein FliJ compare
PP_4344 -0.4 -3.5 flagellar export pore protein compare
PP_4354 -0.4 -1.8 flagellar export apparatus subunit compare
PP_5028 -0.4 -1.2 proline iminopeptidase compare
PP_4941 -0.4 -1.4 conserved exported protein of unknown function compare
PP_5471 -0.4 -1.0 putative response regulator receiver protein compare
PP_2416 -0.4 -1.5 putative Iron ABC transporter, ATP-binding protein compare
PP_4997 -0.4 -1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_2370 -0.4 -0.9 conserved protein of unknown function compare
PP_5327 -0.4 -1.0 putative phosphate ABC transporter, permease subunit compare
PP_3821 -0.4 -3.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0886 -0.4 -2.0 conserved exported protein of unknown function compare
PP_0508 -0.4 -1.7 conserved exported protein of unknown function compare
PP_5289 -0.4 -1.2 Acetylglutamate kinase compare
PP_0190 -0.4 -2.3 putative disulfide bond formation protein B compare
PP_4384 -0.4 -3.3 Flagellar L-ring protein compare
PP_3874 -0.4 -1.8 conserved protein of unknown function compare
PP_4366 -0.4 -3.2 flagellum-specific ATP synthase compare
PP_3810 -0.4 -1.4 conserved protein of unknown function compare
PP_1322 -0.4 -0.6 putative Lipoprotein compare
PP_3085 -0.4 -2.0 putative Transmembrane sensor compare
PP_0240 -0.4 -1.0 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_1307 -0.4 -1.2 AsnC family transcriptional regulator compare
PP_5007 -0.4 -1.1 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4769 -0.4 -2.0 conserved protein of unknown function compare
PP_3627 -0.4 -1.9 conserved protein of unknown function compare
PP_5519 -0.4 -1.5 conserved protein of unknown function of phage origin compare
PP_5090 -0.4 -1.4 putative cell division protein compare
PP_4789 -0.4 -1.7 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_1716 -0.4 -1.3 Transcriptional regulator, Cro/CI family compare
PP_0695 -0.4 -1.6 conserved protein of unknown function compare
PP_1544 -0.4 -1.4 conserved protein of unknown function compare
PP_5604 -0.4 -1.0 putative subtilisin-like serine protease compare
PP_0914 -0.4 -2.7 GGDEF domain protein compare
PP_4004 -0.4 -1.2 DNA translocase FtsK compare
PP_4378 -0.4 -3.5 flagellin, filament structural protein compare
PP_2152 -0.4 -1.3 glycerophosphoryl diester phosphodiesterase compare
PP_0411 -0.4 -2.2 Polyamine ABC transporter, ATP-binding protein compare
PP_0516 -0.4 -1.7 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_2634 -0.4 -2.0 putative Cellulose synthase compare
PP_0306 -0.4 -1.6 conserved protein of unknown function compare
PP_2422 -0.4 -1.7 conserved protein of unknown function compare
PP_4361 -0.4 -2.2 Flagellar hook-length control protein FliK compare
PP_0141 -0.4 -2.2 putative ABC transporter, ATP-binding protein compare
PP_0025 -0.4 -0.8 hypothetical protein compare
PP_1569 -0.4 -1.7 conserved protein of unknown function compare
PP_4743 -0.4 -1.5 conserved protein of unknown function compare
PP_4353 -0.4 -1.9 Flagellar biosynthetic protein fliR compare
PP_4341 -0.4 -2.2 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4208 -0.4 -2.1 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_0963 -0.4 -1.4 putative BolA family protein compare
PP_5174 -0.4 -2.0 Efflux membrane fusion protein, RND family compare
PP_4880 -0.4 -2.4 exoribonuclease R compare
PP_4352 -0.4 -2.7 flagellin export apparatus, substrate specificity protein compare
PP_1344 -0.4 -1.1 conserved protein of unknown function compare
PP_3054 -0.4 -2.2 Pyocin R2_PP, baseplate/tail fiber protein compare
PP_4502 -0.4 -1.3 putative enzyme compare
PP_2684 -0.4 -1.2 conserved membrane protein of unknown function compare
PP_2705 -0.4 -1.2 conserved protein of unknown function compare
PP_5535 -0.4 -2.1 conserved membrane protein of unknown function compare
PP_4094 -0.4 -0.6 conserved protein of unknown function compare
PP_5025 -0.4 -2.8 Glucans biosynthesis glucosyltransferase H compare
PP_4500 -0.4 -1.6 TrpH family protein compare
PP_5502 -0.4 -1.5 ribosome modulation factor compare
PP_5639 -0.4 -2.6 conserved exported protein of unknown function compare
PP_3144 -0.4 -2.2 L-serine dehydratase compare
PP_4124 -0.4 -1.2 NADH-quinone oxidoreductase subunit G compare
PP_1862 -0.4 -1.4 conserved membrane protein of unknown function compare
PP_4380 -0.4 -2.9 Flagellar hook-associated protein FlgL compare
PP_5346 -0.4 -2.3 pyruvate carboxylase subunit B compare
PP_3404 -0.4 -1.4 conserved protein of unknown function compare
PP_4130 -0.4 -1.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4215 -0.4 -1.6 pyoverdine biosynthesis related protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in time series experiments

For time series D-Glucose across organisms