Experiment set32IT055 for Pseudomonas putida KT2440

Compare to:

Timeseries; NC condition; Bioreplicate 1; Time 5hrs; Measurement replicate 1

200 most detrimental genes:

  gene name fitness t score description  
PP_0846 +1.5 3.5 DnaK-like molecular chaperone specific for IscU compare
PP_4099 +1.0 9.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +1.0 9.8 Sensor protein GacS compare
PP_4263 +0.9 3.6 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_5571 +0.9 2.5 conserved protein of unknown function compare
PP_3239 +0.8 2.1 putative cointegrate resolution protein T Tn4652 compare
PP_4262 +0.8 1.2 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2331 +0.7 3.9 conserved membrane protein of unknown function compare
PP_4517 +0.7 2.4 conserved protein of unknown function compare
PP_5393 +0.7 1.5 putative metal-binding chaperone compare
PP_3726 +0.7 2.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_3938 +0.7 1.4 conserved protein of unknown function compare
PP_2330 +0.7 3.9 conserved protein of unknown function compare
PP_0685 +0.6 2.0 conserved protein of unknown function compare
PP_3926 +0.6 1.6 short-chain dehydrogenase compare
PP_2899 +0.6 2.2 conserved exported protein of unknown function compare
PP_5475 +0.6 1.6 conserved protein of unknown function compare
PP_1310 +0.6 1.9 conserved hypothetical protein compare
PP_5483 +0.6 2.4 conserved protein of unknown function compare
PP_4329 +0.6 2.7 FlhB domain protein compare
PP_2341 +0.6 2.1 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4799 +0.6 0.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4787 +0.6 1.6 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1719 +0.6 4.4 Tail-specific protease prc compare
PP_2700 +0.6 2.9 AhpC/TSA family protein compare
PP_5338 +0.6 1.7 aspartate ammonia-lyase compare
PP_4560 +0.6 2.4 putative Ribonuclease BN compare
PP_0152 +0.5 0.9 conserved exported protein of unknown function compare
PP_5582 +0.5 1.4 conserved protein of unknown function compare
PP_5167 +0.5 2.8 conserved hypothetical protein compare
PP_4253 +0.5 2.2 cytochrome c oxidase subunit, cbb3-type compare
PP_1812 +0.5 2.0 conserved protein of unknown function compare
PP_5453 +0.5 1.7 conserved protein of unknown function compare
PP_5705 +0.5 1.8 protein of unknown function compare
PP_2581 +0.5 1.7 conserved protein of unknown function compare
PP_0957 +0.5 1.5 D-arabinose 5-phosphate isomerase compare
PP_5001 +0.5 1.4 protease HslVU, ATPase component compare
PP_3052 +0.5 1.3 conserved protein of unknown function compare
PP_1655 +0.5 4.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1656 +0.5 4.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_5176 +0.5 2.2 conserved protein of unknown function compare
PP_1783 +0.5 1.0 dTDP-glucose pyrophosphorylase compare
PP_2322 +0.5 2.5 Major outer membrane lipoprotein compare
PP_4701 +0.5 0.9 glucose-6-phosphate isomerase compare
PP_1536 +0.5 1.9 conserved protein of unknown function compare
PP_2046 +0.5 1.8 Transcriptional regulator, LysR family compare
PP_2721 +0.5 2.6 conserved membrane protein of unknown function compare
PP_1800 +0.5 3.7 Oxidoreductase Rmd compare
PP_2032 +0.5 2.8 putative ATPase compare
PP_4684 +0.5 2.2 conserved protein of unknown function with kinase-like domain compare
PP_t29 +0.5 1.3 tRNA-Ala compare
PP_0775 +0.5 0.6 conserved protein of unknown function compare
PP_5022 +0.5 1.2 Glutamine transport ATP-binding protein GlnQ compare
PP_t49 +0.5 2.5 tRNA-Met compare
PP_3971 +0.5 1.5 conserved protein of unknown function compare
PP_5339 +0.5 2.3 transcriptional regulator, ornithine utilization compare
PP_5145 +0.5 4.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3637 +0.5 1.2 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1109 +0.4 4.0 Transcriptional regulator, GntR family compare
PP_3017 +0.4 1.9 O6-methylguanine-DNA methyltransferase compare
PP_3908 +0.4 1.7 conserved protein of unknown function compare
PP_4793 +0.4 1.9 conserved protein of unknown function compare
PP_1995 +0.4 3.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1776 +0.4 3.7 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_2857 +0.4 1.8 conserved exported protein of unknown function compare
PP_1829 +0.4 1.5 Hydrolase, alpha/beta fold family compare
PP_0627 +0.4 1.1 conserved protein of unknown function compare
PP_2087 +0.4 1.6 CmpX protein compare
PP_2514 +0.4 2.1 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_1729 +0.4 1.6 conserved protein of unknown function compare
PP_2794 +0.4 1.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_3505 +0.4 0.7 conserved protein of unknown function compare
PP_0108 +0.4 2.0 conserved protein of unknown function compare
PP_3241 +0.4 0.9 conserved exported protein of unknown function compare
PP_4171 +0.4 4.1 conserved exported protein of unknown function compare
PP_0666 +0.4 2.1 conserved protein of unknown function compare
PP_4261 +0.4 2.2 cation-transporting P-type ATPase compare
PP_0082 +0.4 1.9 tryptophan synthase alpha chain compare
PP_5548 +0.4 1.0 protein of unknown function compare
PP_2615 +0.4 1.1 hemolysin-coregulated protein compare
PP_4556 +0.4 2.1 conserved protein of unknown function compare
PP_0062 +0.4 2.2 3-methyl-adenine DNA glycosylase I compare
PP_5267 +0.4 1.5 putative cytochrome c5 compare
PP_2432 +0.4 2.3 6,7-dihydropteridine reductase compare
PP_2299 +0.4 2.2 Trigger factor compare
PP_4098 +0.4 1.0 UvrABC system protein C compare
PP_3738 +0.4 2.1 putative Transcriptional regulator VanR compare
PP_3198 +0.4 1.3 Ferredoxin, 2Fe-2S compare
PP_1770 +0.4 2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0610 +0.4 1.8 conserved exported protein of unknown function compare
PP_1799 +0.4 3.3 GDP-mannose 4,6-dehydratase compare
PP_1055 +0.4 1.0 Type II secretion pathway protein GspN compare
PP_3771 +0.4 2.7 conserved protein of unknown function compare
PP_0421 +0.4 2.8 Anthranilate phosphoribosyltransferase compare
PP_4250 +0.4 2.9 cytochrome c oxidase subunit I, cbb3-type compare
PP_2980 +0.4 2.5 conserved protein of unknown function compare
PP_2153 +0.4 1.8 conserved protein of unknown function compare
PP_1153 +0.4 1.9 putative lipoprotein compare
PP_1632 +0.4 1.3 conserved protein of unknown function compare
PP_1228 +0.4 2.7 Methyl-accepting chemotaxis transducer compare
PP_3384 +0.4 1.0 gluconate 2-dehydrogenase gamma subunit compare
PP_2842 +0.4 1.5 urease accessory protein compare
PP_5456 +0.4 1.2 conserved protein of unknown function compare
PP_1804 +0.4 2.5 Glycosyl transferase WbpL compare
PP_4218 +0.4 2.3 Lipase/esterase family protein compare
PP_2192 +0.4 1.9 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein compare
PP_0550 +0.4 1.6 conserved protein of unknown function compare
PP_2340 +0.4 1.1 conserved protein of unknown function compare
PP_0422 +0.4 2.3 Indole-3-glycerol phosphate synthase compare
PP_3003 +0.4 1.8 3-dehydroquinate dehydratase 3, type II compare
PP_2681 +0.4 0.7 coenzyme PQQ synthesis protein D compare
PP_2231 +0.4 1.7 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_3451 +0.4 2.5 conserved exported protein of unknown function compare
PP_3559 +0.4 1.3 glycine betaine ABC transporter (permease) compare
PP_5674 +0.4 1.6 conserved protein of unknown function compare
PP_5625 +0.4 1.4 conserved protein of unknown function compare
PP_0725 +0.4 2.1 conserved hypothetical TPR repeat protein compare
PP_5671 +0.4 1.5 conserved protein of unknown function compare
PP_2889 +0.4 2.5 putative Transmembrane regulator PrtR compare
PP_2083 +0.4 2.2 putative Lipase compare
PP_5659 +0.4 1.3 protein of unknown function compare
PP_2084 +0.4 2.0 Putative regulator of ribonuclease activity compare
PP_2430 +0.4 1.3 Transcriptional regulator, AraC family compare
PP_2970 +0.4 1.5 conserved exported protein of unknown function compare
PP_1780 +0.4 3.2 putative mannosyltransferase compare
PP_1621 +0.4 1.5 Protein-L-isoaspartate O-methyltransferase compare
PP_0710 +0.4 1.8 conserved protein of unknown function compare
PP_0629 +0.4 2.0 conserved membrane protein of unknown function compare
PP_0893 +0.3 1.4 ThiJ/PfpI family protein compare
PP_0001 +0.3 0.7 probable chromosome-partitioning protein compare
PP_2232 +0.3 1.3 XRE family transcriptional regulator compare
PP_3638 +0.3 2.0 putative Acyl-CoA dehydrogenase compare
PP_2360 +0.3 1.3 putative type 1 pili subunit CsuA/B protein compare
PP_4961 +0.3 1.1 putative Lipoprotein compare
PP_1041 +0.3 1.4 twin arginine protein export complex subunit compare
PP_2003 +0.3 1.5 conserved protein of unknown function compare
PP_5423 +0.3 0.8 conserved membrane protein of unknown function compare
PP_0414 +0.3 1.9 Polyamine ABC transporter, permease protein compare
PP_1111 +0.3 2.2 putative Synthetase compare
PP_1317 +0.3 1.4 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0806 +0.3 3.3 putative Surface adhesion protein compare
PP_5631 +0.3 2.1 protein of unknown function compare
PP_1318 +0.3 1.8 Cytochrome b compare
PP_4009 +0.3 1.3 ATP-dependent Clp protease adapter protein ClpS compare
PP_3555 +0.3 1.9 putative Transmembrane sensor compare
PP_3326 +0.3 1.5 conserved exported protein of unknown function compare
PP_4564 +0.3 2.2 putative Lipoprotein compare
PP_3508 +0.3 1.3 Protein CobW compare
PP_3401 +0.3 1.8 conserved protein of unknown function compare
PP_4267 +0.3 2.0 Recombination protein RecR compare
PP_1047 +0.3 1.7 putative protein secretion protein for export compare
PP_0250 +0.3 1.5 heat shock protein Hsp15 involved in ribosome recycling compare
PP_5528 +0.3 0.6 conserved protein of unknown function compare
PP_2024 +0.3 2.2 Exonuclease SbcC compare
PP_2816 +0.3 1.3 putative Transcriptional regulator NfxB compare
PP_1206 +0.3 2.4 basic-amino-acid specific porin OprD compare
PP_4771 +0.3 1.7 conserved membrane protein of unknown function compare
PP_0345 +0.3 1.3 putative Heptose kinase WapP compare
PP_5093 +0.3 0.8 twitching motility protein compare
PP_1756 +0.3 2.0 conserved exported protein of unknown function compare
PP_4399 +0.3 2.5 putative Glutamine synthetase compare
PP_3339 +0.3 1.7 conserved exported protein of unknown function compare
PP_1805 +0.3 2.9 Polysaccharide biosynthesis protein compare
PP_3541 +0.3 1.3 Transporter, MgtC family compare
PP_0962 +0.3 0.8 toluene-tolerance protein compare
PP_1742 +0.3 1.5 conserved inner membrane protein of unknown function compare
PP_3285 +0.3 1.4 detoxifying thioesterase of the phenylacetate degradation pathway compare
PP_0803 +0.3 2.6 Protein secretion ABC efflux system, membrane fusion protein compare
PP_5496 +0.3 0.9 conserved exported protein of unknown function compare
PP_4642 +0.3 0.7 Cyclic diguanosine monophosphate-binding protein compare
PP_3759 +0.3 2.1 Methylesterase, CheB-like compare
PP_0805 +0.3 2.7 Outer membrane efflux protein compare
PP_1236 +0.3 1.6 putative Glycine cleavage system transcriptional repressor compare
PP_4797 +0.3 1.0 conserved protein of unknown function compare
PP_5530 +0.3 2.2 protein of unknown function compare
PP_0417 +0.3 2.8 Anthranilate synthase component 1 compare
PP_2619 +0.3 1.7 FHA domain protein compare
PP_4874 +0.3 0.5 50S ribosomal protein L9 compare
PP_3378 +0.3 1.2 putative 2-ketogluconokinase compare
PP_3024 +0.3 2.1 conserved protein of unknown function compare
PP_1803 +0.3 2.6 UDP-sugar epimerase compare
PP_4664 +0.3 1.7 Transcriptional regulator, LysR family compare
PP_2972 +0.3 0.9 conserved protein of unknown function compare
PP_4820 +0.3 2.1 tRNA-dihydrouridine synthase B compare
PP_5112 +0.3 2.4 putative processin peptidase compare
PP_4340 +0.3 1.1 response regulator for chemotactic signal transduction compare
PP_4362 +0.3 1.4 conserved protein of unknown function compare
PP_2307 +0.3 0.9 conserved protein of unknown function compare
PP_1633 +0.3 1.5 conserved exported protein of unknown function compare
PP_2946 +0.3 1.5 peptidyl-tRNA hydrolase, ribosome rescue factor compare
PP_4911 +0.3 2.2 conserved protein of unknown function compare
PP_3487 +0.3 0.9 conserved exported protein of unknown function compare
PP_3286 +0.3 1.5 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_5554 +0.3 1.9 protein of unknown function compare
PP_2712 +0.3 1.6 conserved exported protein of unknown function compare
PP_1561 +0.3 1.7 putative Phage holin compare
PP_2937 +0.3 2.1 putative Integrase compare
PP_5390 +0.3 1.9 conserved hypothetical protein compare
PP_5156 +0.3 1.8 conserved exported protein of unknown function compare
PP_5504 +0.3 1.6 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in time series experiments

For time series D-Glucose across organisms