Experiment set32IT052 for Pseudomonas putida KT2440

Compare to:

Timeseries; NC condition; Bioreplicate 1; Time 4hrs; Measurement replicate 3

200 most important genes:

  gene name fitness t score description  
PP_4724 -4.0 -2.8 Carbamoyl-phosphate synthase small chain compare
PP_4723 -3.4 -7.2 Carbamoyl-phosphate synthase large chain compare
PP_4999 -2.9 -2.0 dihydroorotase-like protein compare
PP_1237 -2.6 -2.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4994 -2.2 -3.0 conserved protein of unknown function compare
PP_1734 -2.1 -4.0 Probable septum site-determining protein MinC compare
PP_0339 -2.1 -3.8 Pyruvate dehydrogenase E1 component compare
PP_5329 -1.9 -2.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2378 -1.6 -2.2 Fe/S biogenesis protein NfuA compare
PP_1198 -1.5 -1.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1729 -1.4 -2.1 conserved protein of unknown function compare
PP_4902 -1.4 -4.0 Oligoribonuclease compare
PP_1664 -1.4 -2.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_4989 -1.3 -2.2 Protein PilJ compare
PP_3378 -1.3 -2.7 putative 2-ketogluconokinase compare
PP_2328 -1.3 -4.5 Phosphoadenosine phosphosulfate reductase compare
PP_0691 -1.3 -1.7 Glutamate 5-kinase compare
PP_4356 -1.3 -3.9 Flagellar protein FliO compare
PP_1366 -1.3 -2.0 Transcriptional regulator MvaT, P16 subunit compare
PP_1216 -1.3 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5093 -1.2 -1.2 twitching motility protein compare
PP_0685 -1.2 -1.6 conserved protein of unknown function compare
PP_5748 -1.2 -1.8 cytochrome c heme lyase subunit compare
PP_5508 -1.2 -1.6 conserved protein of unknown function compare
PP_4874 -1.2 -1.3 50S ribosomal protein L9 compare
PP_3999 -1.1 -4.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5155 -1.1 -4.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4593 -1.0 -2.0 conserved protein of unknown function compare
PP_4109 -1.0 -2.6 conserved protein of unknown function compare
PP_2145 -1.0 -2.2 beta-N-acetylglucosaminidase compare
PP_4909 -1.0 -3.0 phosphoserine phosphatase compare
PP_5090 -1.0 -1.8 putative cell division protein compare
PP_4008 -1.0 -2.8 ATP-dependent serine protease compare
PP_3392 -1.0 -2.0 conserved protein of unknown function compare
PP_1428 -1.0 -2.8 Sigma factor AlgU negative regulatory protein compare
PP_4273 -1.0 -1.8 Transcriptional regulator, MerR family compare
PP_3880 -1.0 -1.5 conserved exported protein of unknown function compare
PP_4936 -1.0 -4.0 O-antigen polymerase compare
PP_0007 -0.9 -3.2 conserved hypothetical protein compare
PP_4271 -0.9 -1.1 conserved protein of unknown function compare
PP_2661 -0.9 -2.2 conserved protein of unknown function compare
PP_4696 -0.9 -2.7 Nitrogen regulation protein NR(I) compare
PP_0164 -0.9 -3.4 conserved protein of unknown function compare
PP_3876 -0.9 -1.9 conserved protein of unknown function compare
PP_4895 -0.9 -1.9 tRNA dimethylallyltransferase compare
PP_1097 -0.9 -1.1 Methionine--tRNA ligase compare
PP_0833 -0.9 -1.1 queuine tRNA-ribosyltransferase compare
PP_5338 -0.9 -2.1 aspartate ammonia-lyase compare
PP_1654 -0.9 -2.8 cysteine synthase B compare
PP_0435 -0.8 -3.1 Peptidase, M23/M37 family compare
PP_5594 -0.8 -2.2 conserved protein of unknown function compare
PP_5473 -0.8 -2.3 putative transcriptional regulator, LuxR family compare
PP_4365 -0.8 -2.8 Flagellar protein FliJ compare
PP_1493 -0.8 -1.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3035 -0.8 -1.8 conserved protein of unknown function compare
PP_4904 -0.8 -5.2 Flagellar motor rotation protein compare
PP_4997 -0.8 -1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4367 -0.8 -3.4 Flagellar assembly protein FliH compare
PP_2291 -0.8 -2.0 conserved protein of unknown function compare
PP_4254 -0.8 -1.2 conserved protein of unknown function compare
PP_0989 -0.8 -1.5 glycine cleavage system H protein 1 compare
PP_4528 -0.7 -1.8 conserved protein of unknown function compare
PP_4353 -0.7 -3.1 Flagellar biosynthetic protein fliR compare
PP_0846 -0.7 -0.6 DnaK-like molecular chaperone specific for IscU compare
PP_2433 -0.7 -1.0 conserved protein of unknown function compare
PP_2370 -0.7 -1.7 conserved protein of unknown function compare
PP_1737 -0.7 -4.6 conserved protein of unknown function compare
PP_2290 -0.7 -2.6 conserved protein of unknown function compare
PP_1124 -0.7 -2.0 conserved membrane protein of unknown function compare
PP_2121 -0.7 -1.1 putative Lipoprotein compare
PP_5317 -0.7 -1.8 Probable chorismate pyruvate-lyase compare
PP_5717 -0.7 -1.0 conserved protein of unknown function compare
PP_1898 -0.7 -1.1 MotA/TolQ/ExbB proton channel family protein compare
PP_4693 -0.7 -2.8 RNA polymerase-binding transcription factor DksA compare
PP_4942 -0.7 -0.9 conserved protein of unknown function compare
PP_2756 -0.7 -1.0 conserved protein of unknown function compare
PP_5279 -0.7 -1.7 conserved protein of unknown function compare
PP_1215 -0.7 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_2864 -0.7 -2.6 conserved protein of unknown function compare
PP_4126 -0.7 -0.9 NADH-quinone oxidoreductase subunit I compare
PP_4941 -0.7 -2.4 conserved exported protein of unknown function compare
PP_0127 -0.7 -2.4 Thiol:disulfide interchange protein compare
PP_0025 -0.7 -1.1 hypothetical protein compare
PP_4370 -0.7 -2.7 Flagellar hook-basal body complex protein FliE compare
PP_1556 -0.7 -2.8 conserved protein of unknown function compare
PP_4358 -0.7 -4.4 flagellar synthesis, switching and energizing component compare
PP_2826 -0.6 -1.4 Transcriptional regulator MexT compare
PP_3307 -0.6 -1.5 conserved protein of unknown function compare
PP_3447 -0.6 -1.0 conserved membrane protein of unknown function compare
PP_4938 -0.6 -4.2 putative Glycosyl transferase compare
PP_1938 -0.6 -1.9 conserved protein of unknown function compare
PP_5313 -0.6 -1.7 DNA-binding protein HU-alpha compare
PP_2568 -0.6 -1.1 Ring-cleaving dioxygenase compare
PP_5267 -0.6 -0.9 putative cytochrome c5 compare
PP_4379 -0.6 -1.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1348 -0.6 -3.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3840 -0.6 -1.2 conserved protein of unknown function compare
PP_1738 -0.6 -3.6 conserved exported protein of unknown function compare
PP_2429 -0.6 -1.0 putative Membrane protein compare
PP_5495 -0.6 -1.8 protein of unknown function compare
PP_4722 -0.6 -1.8 Transcription elongation factor GreA compare
PP_5008 -0.6 -1.0 Poly granule-associated protein compare
PP_1764 -0.6 -1.6 Phosphoglycolate phosphatase 2 compare
PP_4743 -0.6 -2.1 conserved protein of unknown function compare
PP_3276 -0.6 -2.7 ring 1,2-phenylacetyl-CoA epoxidase beta subunit compare
PP_4366 -0.6 -4.3 flagellum-specific ATP synthase compare
PP_4166 -0.6 -1.8 conserved protein of unknown function compare
PP_4317 -0.6 -2.0 conserved protein of unknown function compare
PP_1048 -0.6 -1.9 putative protein secretion protein for export compare
PP_0962 -0.6 -1.0 toluene-tolerance protein compare
PP_2922 -0.6 -1.6 Urea amidolyase-related protein compare
PP_3398 -0.6 -1.1 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2340 -0.6 -1.6 conserved protein of unknown function compare
PP_2144 -0.6 -2.7 Transcriptional regulator, TetR family compare
PP_4917 -0.6 -1.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1430 -0.6 -3.2 putative periplasmic serine endoprotease DegP-like compare
PP_4394 -0.6 -2.5 flagella basal body P-ring formation protein compare
PP_1812 -0.6 -1.7 conserved protein of unknown function compare
PP_3186 -0.6 -2.6 putative Transcriptional activator compare
PP_2737 -0.6 -1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4471 -0.6 -1.8 Magnesium transporter compare
PP_2414 -0.6 -1.3 conserved exported protein of unknown function compare
PP_4940 -0.5 -2.6 Putative glycosyltransferase compare
PP_2640 -0.5 -1.9 Acetyltransferase, GNAT family compare
PP_4517 -0.5 -1.5 conserved protein of unknown function compare
PP_2031 -0.5 -1.7 conserved protein of unknown function compare
PP_1544 -0.5 -2.2 conserved protein of unknown function compare
PP_5347 -0.5 -3.5 pyruvate carboxylase subunit A compare
PP_3804 -0.5 -2.4 conserved exported protein of unknown function compare
PP_0352 -0.5 -1.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_3434 -0.5 -1.3 conserved protein of unknown function compare
PP_4381 -0.5 -4.1 Flagellar hook-associated protein FlgK compare
PP_3757 -0.5 -0.9 Chemotaxis protein CheY compare
PP_4245 -0.5 -3.1 hydroxyproline acetylase compare
PP_2269 -0.5 -1.6 putative N-acetylmuramoyl-L-alanine amidase compare
PP_1679 -0.5 -1.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4336 -0.5 -2.7 flagellar motor rotation protein compare
PP_2110 -0.5 -1.9 putative ribosomal large subunit pseudouridine synthase compare
PP_2954 -0.5 -1.9 conserved protein of unknown function compare
PP_1609 -0.5 -1.8 conserved protein of unknown function compare
PP_0294 -0.5 -2.0 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) compare
PP_4504 -0.5 -1.1 conserved exported protein of unknown function compare
PP_5487 -0.5 -2.0 conserved protein of unknown function compare
PP_4074 -0.5 -1.9 conserved protein of unknown function compare
PP_5331 -0.5 -1.0 Long-chain acyl-CoA thioester hydrolase compare
PP_5658 -0.5 -1.4 protein of unknown function compare
PP_0809 -0.5 -3.0 disulfide bond formation protein B compare
PP_0002 -0.5 -3.0 probable chromosome partition protein compare
PP_5654 -0.5 -1.4 putative phosphotriesterase compare
PP_2497 -0.5 -1.4 conserved protein of unknown function compare
PP_5243 -0.5 -1.6 putative hydrolase compare
PP_3460 -0.5 -1.1 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4004 -0.5 -1.4 DNA translocase FtsK compare
PP_4208 -0.5 -2.4 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4213 -0.5 -0.9 putative dipeptidase compare
PP_1742 -0.5 -1.6 conserved inner membrane protein of unknown function compare
PP_5348 -0.5 -3.6 Transcriptional regulator, LysR family compare
PP_4957 -0.5 -1.2 conserved protein of unknown function compare
PP_4993 -0.5 -1.5 Glutathione synthetase compare
PP_4215 -0.5 -1.9 pyoverdine biosynthesis related protein compare
PP_1548 -0.5 -1.0 conserved protein of unknown function compare
PP_0801 -0.5 -0.8 conserved exported protein of unknown function compare
PP_4503 -0.5 -2.0 DNA-binding response regulator compare
PP_1789 -0.5 -2.6 Hydrolase, haloacid dehalogenase-like family compare
PP_3908 -0.5 -1.1 conserved protein of unknown function compare
PP_0064 -0.5 -1.4 conserved protein of unknown function compare
PP_3258 -0.5 -1.3 conserved protein of unknown function compare
PP_4262 -0.5 -1.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4361 -0.5 -2.5 Flagellar hook-length control protein FliK compare
PP_4133 -0.5 -1.3 Transcriptional regulator-related protein compare
PP_1324 -0.5 -2.2 putative endonuclease distantly related to archaeal Holliday junction resolvase compare
PP_1186 -0.5 -0.9 two component system DNA-binding transcriptional dual regulator compare
PP_4943 -0.5 -1.1 putative Glycosyl transferase compare
PP_2931 -0.5 -1.0 conserved protein of unknown function compare
PP_0434 -0.5 -1.8 Anhydro-N-acetylmuramic acid kinase compare
PP_5223 -0.5 -1.7 regulator of nucleotide diphosphokinase compare
PP_3318 -0.5 -1.3 conserved protein of unknown function compare
PP_4389 -0.5 -2.5 Flagellar basal-body rod modification protein FlgD compare
PP_1808 -0.5 -1.0 glucose-6-phosphate isomerase compare
PP_4396 -0.5 -1.4 conserved protein of unknown function compare
PP_4564 -0.5 -2.0 putative Lipoprotein compare
PP_3766 -0.5 -1.5 Lactoylglutathione lyase compare
PP_0908 -0.5 -2.4 conserved exported protein of unknown function compare
PP_4369 -0.5 -3.3 Flagellar M-ring protein compare
PP_5485 -0.5 -2.4 putative N-acetyltransferase, GNAT domain compare
PP_1605 -0.5 -1.1 Ribonuclease HII compare
PP_5339 -0.5 -2.3 transcriptional regulator, ornithine utilization compare
PP_1862 -0.5 -1.2 conserved membrane protein of unknown function compare
PP_4342 -0.5 -1.3 flagellar synthesis regulator, putative ATPase compare
PP_0852 -0.4 -2.5 Transcriptional regulator, Cro/CI family compare
PP_2794 -0.4 -1.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_3185 -0.4 -2.1 Pet18 protein compare
PP_2217 -0.4 -1.2 enoyl-CoA hydratase compare
PP_1632 -0.4 -1.0 conserved protein of unknown function compare
PP_1824 -0.4 -0.4 Smr domain protein compare
PP_4720 -0.4 -1.0 putative RNA binding protein compare
PP_2103 -0.4 -1.9 conserved protein of unknown function compare
PP_3580 -0.4 -1.0 conserved protein of unknown function compare
PP_2528 -0.4 -2.7 O-acetylhomoserine (thiol)-lyase compare
PP_5035 -0.4 -2.5 Histidine utilization repressor compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in time series experiments

For time series D-Glucose across organisms