Experiment set32IT046 for Pseudomonas putida KT2440

Compare to:

Timeseries; NC condition; Bioreplicate 1; Time 4hrs; Measurement replicate 1

200 most important genes:

  gene name fitness t score description  
PP_1237 -4.4 -3.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4723 -3.5 -6.3 Carbamoyl-phosphate synthase large chain compare
PP_4724 -3.1 -3.7 Carbamoyl-phosphate synthase small chain compare
PP_1898 -2.2 -2.6 MotA/TolQ/ExbB proton channel family protein compare
PP_0001 -2.1 -2.0 probable chromosome-partitioning protein compare
PP_1664 -2.1 -3.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_4136 -2.0 -2.6 Transcriptional regulator, LuxR family compare
PP_4902 -1.9 -3.5 Oligoribonuclease compare
PP_5393 -1.8 -1.8 putative metal-binding chaperone compare
PP_4909 -1.8 -4.8 phosphoserine phosphatase compare
PP_5028 -1.7 -3.5 proline iminopeptidase compare
PP_1734 -1.6 -2.4 Probable septum site-determining protein MinC compare
PP_1493 -1.4 -3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5329 -1.3 -2.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2793 -1.2 -2.5 Acyl-CoA dehydrogenase family protein compare
PP_5453 -1.2 -1.6 conserved protein of unknown function compare
PP_0339 -1.1 -2.8 Pyruvate dehydrogenase E1 component compare
PP_4936 -1.1 -5.9 O-antigen polymerase compare
PP_0406 -1.1 -2.6 Nucleotidyltransferase family protein compare
PP_4943 -1.1 -1.6 putative Glycosyl transferase compare
PP_0833 -1.1 -1.2 queuine tRNA-ribosyltransferase compare
PP_5155 -1.0 -3.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5328 -1.0 -1.7 putative phosphate transport system permease protein compare
PP_2328 -1.0 -3.3 Phosphoadenosine phosphosulfate reductase compare
PP_3738 -1.0 -2.8 putative Transcriptional regulator VanR compare
PP_2336 -1.0 -2.9 aconitate hydratase 1 compare
PP_0306 -1.0 -1.7 conserved protein of unknown function compare
PP_2433 -0.9 -1.5 conserved protein of unknown function compare
PP_3637 -0.9 -1.4 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_3551 -0.9 -1.3 DNA-binding response regulator, LuxR family compare
PP_2313 -0.9 -2.2 conserved membrane protein of unknown function compare
PP_4938 -0.9 -5.5 putative Glycosyl transferase compare
PP_4696 -0.9 -4.0 Nitrogen regulation protein NR(I) compare
PP_0566 -0.9 -1.2 translation-related factor compare
PP_2857 -0.9 -1.8 conserved exported protein of unknown function compare
PP_2402 -0.9 -1.1 putative Sensor histidine kinase compare
PP_5556 -0.9 -3.4 putative bacteriophage lysis protein compare
PP_1122 -0.9 -1.7 OmpA family protein compare
PP_5007 -0.9 -0.9 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_3649 -0.9 -2.1 Transcriptional regulator, GntR family compare
PP_5604 -0.9 -2.0 putative subtilisin-like serine protease compare
PP_2302 -0.8 -2.6 DNA-binding, ATP-dependent protease compare
PP_5473 -0.8 -2.4 putative transcriptional regulator, LuxR family compare
PP_1691 -0.8 -2.3 conserved protein of unknown function compare
PP_4004 -0.8 -2.0 DNA translocase FtsK compare
PP_0393 -0.8 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1317 -0.8 -1.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1198 -0.8 -1.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4808 -0.8 -0.9 23S rRNA m3psi1915 methyltransferase compare
PP_0164 -0.8 -3.4 conserved protein of unknown function compare
PP_5051 -0.8 -1.8 conserved protein of unknown function compare
PP_4942 -0.8 -1.1 conserved protein of unknown function compare
PP_0127 -0.8 -3.4 Thiol:disulfide interchange protein compare
PP_5095 -0.8 -0.7 pyrroline-5-carboxylate reductase compare
PP_5216 -0.8 -1.0 exopolyphosphatase compare
PP_1026 -0.7 -2.4 Peptidase, M23/M37 family compare
PP_4824 -0.7 -2.6 Sensor histidine kinase/response regulator compare
PP_3999 -0.7 -2.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2740 -0.7 -1.9 Transcriptional regulator, MerR family compare
PP_5083 -0.7 -1.9 putative Type IV pili biogenesis protein PilM compare
PP_5441 -0.7 -1.5 protein of unknown function compare
PP_4370 -0.7 -2.0 Flagellar hook-basal body complex protein FliE compare
PP_5327 -0.7 -1.6 putative phosphate ABC transporter, permease subunit compare
PP_3480 -0.7 -2.3 conserved protein of unknown function compare
PP_5073 -0.7 -1.1 conserved exported protein of unknown function compare
PP_4301 -0.7 -1.2 Pyruvate kinase compare
PP_3866 -0.7 -1.5 conserved protein of unknown function compare
PP_0125 -0.7 -1.4 putative cytochrome c-type protein compare
PP_4994 -0.7 -0.9 conserved protein of unknown function compare
PP_4726 -0.7 -1.7 Chaperone protein DnaJ compare
PP_4925 -0.7 -1.9 conserved protein of unknown function compare
PP_0087 -0.7 -1.7 conserved exported protein of unknown function compare
PP_4699 -0.7 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0677 -0.7 -1.9 putative Lipoprotein compare
PP_3903 -0.7 -0.9 conserved protein of unknown function compare
PP_0719 -0.7 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4368 -0.7 -2.6 flagellar motor switch protein compare
PP_4124 -0.6 -2.2 NADH-quinone oxidoreductase subunit G compare
PP_4569 -0.6 -2.3 conserved protein of unknown function compare
PP_4008 -0.6 -2.0 ATP-dependent serine protease compare
PP_4337 -0.6 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_5SB -0.6 -1.0 5S ribosomal RNA compare
PP_2371 -0.6 -2.7 Sulphite reductase hemoprotein, beta subunit compare
PP_1826 -0.6 -1.3 Hydrolase, isochorismatase family compare
PP_1528 -0.6 -1.2 conserved protein of unknown function compare
PP_3244 -0.6 -1.8 Magnesium transporter, MgtC family compare
PP_1186 -0.6 -2.1 two component system DNA-binding transcriptional dual regulator compare
PP_1096 -0.6 -1.4 putative electron transport complex protein compare
PP_3143 -0.6 -2.1 Transcriptional regulator, LysR family compare
PP_4356 -0.6 -1.0 Flagellar protein FliO compare
PP_0122 -0.6 -1.5 conserved exported protein of unknown function compare
PP_2646 -0.6 -2.1 conserved protein of unknown function compare
PP_4940 -0.6 -3.0 Putative glycosyltransferase compare
PP_0513 -0.6 -0.9 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4387 -0.6 -1.7 conserved exported protein of unknown function compare
PP_3532 -0.6 -1.3 Transcriptional regulator, AsnC family compare
PP_0593 -0.6 -0.8 putative ribosome-binding factor compare
PP_4988 -0.6 -2.2 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5705 -0.6 -1.2 protein of unknown function compare
PP_3398 -0.6 -1.2 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4365 -0.6 -3.2 Flagellar protein FliJ compare
PP_2337 -0.6 -1.3 aconitate isomerase compare
PP_1783 -0.6 -1.1 dTDP-glucose pyrophosphorylase compare
PP_4793 -0.6 -1.6 conserved protein of unknown function compare
PP_4342 -0.6 -1.6 flagellar synthesis regulator, putative ATPase compare
PP_4999 -0.6 -0.6 dihydroorotase-like protein compare
PP_3307 -0.6 -1.0 conserved protein of unknown function compare
PP_0657 -0.6 -3.0 putative Amino acid ABC transporter, periplasmic amino acid-binding protein compare
PP_2784 -0.6 -1.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1571 -0.6 -1.6 conserved protein of unknown function compare
PP_3580 -0.6 -1.4 conserved protein of unknown function compare
PP_0848 -0.6 -1.0 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1128 -0.6 -1.8 OmpA family protein compare
PP_4952 -0.6 -1.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5229 -0.6 -2.2 conserved protein of unknown function compare
PP_3102 -0.6 -1.5 conserved protein of unknown function compare
PP_1738 -0.5 -3.6 conserved exported protein of unknown function compare
PP_5447 -0.5 -2.1 conserved membrane protein of unknown function compare
PP_4005 -0.5 -2.1 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_0900 -0.5 -1.8 PAP2 family protein compare
PP_4910 -0.5 -1.4 conserved protein of unknown function compare
PP_5156 -0.5 -2.0 conserved exported protein of unknown function compare
PP_2159 -0.5 -1.1 Copper-binding protein, plastocyanin/azurin family compare
PP_4845 -0.5 -1.8 putative Urea ABC transporter, ATP-binding protein compare
PP_4706 -0.5 -2.3 conserved protein of unknown function compare
PP_4464 -0.5 -2.7 Transcriptional regulator, LysR family compare
PP_2145 -0.5 -1.4 beta-N-acetylglucosaminidase compare
PP_3098 -0.5 -0.8 conserved protein of unknown function compare
PP_0516 -0.5 -1.9 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_3000 -0.5 -1.3 MaoC domain protein compare
PP_4419 -0.5 -1.3 transposase compare
PP_1268 -0.5 -1.1 putative HtrA suppressor protein sohA compare
PP_4913 -0.5 -2.0 conserved protein of unknown function compare
PP_5621 -0.5 -1.2 protein of unknown function compare
PP_5295 -0.5 -1.4 conserved protein of unknown function compare
PP_5589 -0.5 -1.8 protein of unknown function containing Rhs repeat-associated core domain compare
PP_0743 -0.5 -3.1 conserved protein with NAD(P)-binding Rossmann-fold domain compare
PP_4693 -0.5 -2.1 RNA polymerase-binding transcription factor DksA compare
PP_2677 -0.5 -1.5 conserved exported protein of unknown function compare
PP_4367 -0.5 -2.3 Flagellar assembly protein FliH compare
PP_2196 -0.5 -0.7 agmatinase compare
PP_0941 -0.5 -1.7 putative ribosome associated protein compare
PP_0840 -0.5 -2.0 serine acetyltransferase compare
PP_5580 -0.5 -1.3 protein of unknown function compare
PP_0191 -0.5 -1.3 Transcriptional regulatory protein AlgQ compare
PP_1559 -0.5 -1.5 Holin compare
PP_4341 -0.5 -2.3 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_0126 -0.5 -1.6 Cytochrome c4 compare
PP_1366 -0.5 -0.8 Transcriptional regulator MvaT, P16 subunit compare
PP_4941 -0.5 -1.5 conserved exported protein of unknown function compare
PP_2355 -0.5 -2.4 Response regulator receiver protein compare
PP_0550 -0.5 -2.1 conserved protein of unknown function compare
PP_1938 -0.5 -1.5 conserved protein of unknown function compare
PP_3883 -0.5 -1.4 putative Phage holin compare
PP_2497 -0.5 -0.6 conserved protein of unknown function compare
PP_2129 -0.5 -1.8 conserved protein of unknown function compare
PP_3400 -0.5 -1.8 alpha-ketoglutarate- and Fe(II)-dependent dioxygenase compare
PP_2222 -0.5 -2.1 conserved protein of unknown function compare
PP_4070 -0.5 -2.2 conserved protein of unknown function compare
PP_1430 -0.5 -2.6 putative periplasmic serine endoprotease DegP-like compare
PP_0367 -0.5 -2.5 conserved protein of unknown function compare
PP_4273 -0.5 -0.3 Transcriptional regulator, MerR family compare
PP_5500 -0.5 -1.7 protein of unknown function compare
PP_3726 -0.5 -0.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_0120 -0.5 -2.2 putative zinc ABC transporter compare
PP_5090 -0.5 -1.0 putative cell division protein compare
PP_3105 -0.5 -1.1 conserved membrane protein of unknown function compare
PP_2186 -0.5 -1.2 putative Formate dehydrogenase, delta subunit compare
PP_2378 -0.5 -0.8 Fe/S biogenesis protein NfuA compare
PP_1404 -0.5 -0.5 conserved protein of unknown function compare
PP_0246 -0.4 -1.0 two-component system DNA-binding response transcriptional dual regulator compare
PP_4286 -0.4 -2.4 allantoinase compare
PP_2088 -0.4 -1.1 RNA polymerase sigma factor SigX compare
PP_2409 -0.4 -1.2 cobalt-zinc-cadmium resistance protein compare
PP_5303 -0.4 -1.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0118 -0.4 -2.8 zinc import ATP-binding protein compare
PP_4126 -0.4 -0.6 NADH-quinone oxidoreductase subunit I compare
PP_5583 -0.4 -0.9 conserved protein of unknown function compare
PP_3634 -0.4 -2.4 putative acetyltransferase, GNAT family compare
PP_3770 -0.4 -1.7 conserved protein of unknown function compare
PP_3378 -0.4 -1.2 putative 2-ketogluconokinase compare
PP_4828 -0.4 -0.8 Precorrin-8X methylmutase compare
PP_1353 -0.4 -1.8 conserved membrane protein of unknown function compare
PP_4066 -0.4 -1.4 methylglutaconyl-CoA hydratase compare
PP_4335 -0.4 -2.5 flagellar motor protein compare
PP_2283 -0.4 -1.7 Tail tubular protein A compare
PP_1654 -0.4 -1.3 cysteine synthase B compare
PP_5675 -0.4 -2.1 conserved protein of unknown function compare
PP_0398 -0.4 -1.6 Thiosulfate sulfurtransferase GlpE compare
PP_0914 -0.4 -2.4 GGDEF domain protein compare
PP_5217 -0.4 -3.5 Polyphosphate kinase compare
PP_5322 -0.4 -1.7 putative metal ion transporter compare
PP_3762 -0.4 -2.0 Response regulator compare
PP_3773 -0.4 -1.1 conserved protein of unknown function compare
PP_3064 -0.4 -1.3 Phage tail protein compare
PP_1713 -0.4 -0.9 Transcriptional regulator PcaQ compare
PP_1216 -0.4 -0.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4331 -0.4 -2.3 conserved protein of unknown function compare
PP_2030 -0.4 -1.8 conserved protein of unknown function compare
PP_0972 -0.4 -1.4 UPF0213 protein PP_0972 compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in time series experiments

For time series D-Glucose across organisms