Experiment set32IT044 for Pseudomonas putida KT2440

Compare to:

Timeseries; MAX condition; Bioreplicate 1; Time 4hrs; Measurement replicate 1

200 most important genes:

  gene name fitness t score description  
PP_4723 -3.9 -5.4 Carbamoyl-phosphate synthase large chain compare
PP_4999 -3.0 -2.0 dihydroorotase-like protein compare
PP_4724 -2.8 -4.2 Carbamoyl-phosphate synthase small chain compare
PP_0719 -2.6 -2.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1764 -2.4 -3.7 Phosphoglycolate phosphatase 2 compare
PP_4828 -2.3 -2.3 Precorrin-8X methylmutase compare
PP_0691 -2.2 -2.2 Glutamate 5-kinase compare
PP_1664 -2.1 -4.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_1734 -1.9 -4.4 Probable septum site-determining protein MinC compare
PP_1198 -1.8 -3.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5095 -1.8 -2.1 pyrroline-5-carboxylate reductase compare
PP_4994 -1.8 -3.4 conserved protein of unknown function compare
PP_2336 -1.6 -3.3 aconitate hydratase 1 compare
PP_4909 -1.6 -5.3 phosphoserine phosphatase compare
PP_0339 -1.6 -3.7 Pyruvate dehydrogenase E1 component compare
PP_5329 -1.5 -2.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1733 -1.5 -2.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_1898 -1.4 -1.7 MotA/TolQ/ExbB proton channel family protein compare
PP_1216 -1.4 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3999 -1.3 -4.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0082 -1.2 -3.3 tryptophan synthase alpha chain compare
PP_5289 -1.2 -2.8 Acetylglutamate kinase compare
PP_1381 -1.2 -1.7 4-carboxymuconolactone decarboxylase compare
PP_2302 -1.1 -3.2 DNA-binding, ATP-dependent protease compare
PP_0232 -1.1 -1.8 ATP-binding taurine transporter subunit compare
PP_4004 -1.1 -3.1 DNA translocase FtsK compare
PP_4008 -1.1 -3.1 ATP-dependent serine protease compare
PP_1439 -1.1 -2.5 conserved exported protein of unknown function compare
PP_0083 -1.1 -3.4 tryptophan synthase beta chain compare
PP_1783 -1.0 -1.8 dTDP-glucose pyrophosphorylase compare
PP_2328 -1.0 -3.5 Phosphoadenosine phosphosulfate reductase compare
PP_1215 -1.0 -0.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_1237 -1.0 -2.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4504 -1.0 -1.8 conserved exported protein of unknown function compare
PP_4952 -1.0 -2.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_3332 -1.0 -2.0 putative cytochrome c-type protein compare
PP_3121 -1.0 -3.5 transcriptional regulator, LysR family compare
PP_4379 -1.0 -2.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2000 -0.9 -0.9 amidophosphoribosyl transferase compare
PP_1716 -0.9 -2.5 Transcriptional regulator, Cro/CI family compare
PP_0435 -0.9 -3.4 Peptidase, M23/M37 family compare
PP_4874 -0.9 -1.6 50S ribosomal protein L9 compare
PP_4988 -0.9 -3.6 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5324 -0.9 -2.8 Response regulator compare
PP_1729 -0.9 -1.7 conserved protein of unknown function compare
PP_0905 -0.9 -1.9 conserved exported protein of unknown function compare
PP_3637 -0.9 -1.4 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2749 -0.9 -3.6 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_2378 -0.9 -1.8 Fe/S biogenesis protein NfuA compare
PP_2668 -0.9 -2.3 ABC efflux transporter, ATP-binding protein compare
PP_0406 -0.8 -1.8 Nucleotidyltransferase family protein compare
PP_0833 -0.8 -1.1 queuine tRNA-ribosyltransferase compare
PP_2737 -0.8 -1.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5155 -0.8 -3.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3048 -0.8 -2.5 conserved protein of unknown function compare
PP_4785 -0.8 -3.8 conserved exported protein of unknown function compare
PP_5223 -0.8 -2.9 regulator of nucleotide diphosphokinase compare
PP_5093 -0.8 -0.9 twitching motility protein compare
PP_2793 -0.8 -1.8 Acyl-CoA dehydrogenase family protein compare
PP_5598 -0.8 -2.7 conserved protein of unknown function compare
PP_0422 -0.8 -3.8 Indole-3-glycerol phosphate synthase compare
PP_2756 -0.8 -2.2 conserved protein of unknown function compare
PP_5000 -0.8 -1.5 peptidase component of the ATP-dependent HslVU protease compare
PP_3384 -0.7 -2.0 gluconate 2-dehydrogenase gamma subunit compare
PP_2414 -0.7 -1.7 conserved exported protein of unknown function compare
PP_1999 -0.7 -1.4 membrane protein required for colicin V production compare
PP_3110 -0.7 -1.2 protein of unknown function compare
PP_4124 -0.7 -2.4 NADH-quinone oxidoreductase subunit G compare
PP_1178 -0.7 -1.2 conserved protein of unknown function compare
PP_4355 -0.7 -1.8 flagellar export apparatus subunit compare
PP_5028 -0.7 -2.2 proline iminopeptidase compare
PP_0630 -0.7 -1.2 DNA gyrase inhibitor YacG compare
PP_0417 -0.7 -5.7 Anthranilate synthase component 1 compare
PP_1654 -0.7 -2.5 cysteine synthase B compare
PP_2633 -0.7 -1.4 conserved protein of unknown function compare
PP_4215 -0.7 -2.4 pyoverdine biosynthesis related protein compare
PP_4964 -0.7 -0.5 D-erythrose 4-phosphate dehydrogenase compare
PP_0420 -0.7 -4.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5090 -0.7 -1.3 putative cell division protein compare
PP_3276 -0.7 -2.7 ring 1,2-phenylacetyl-CoA epoxidase beta subunit compare
PP_0127 -0.7 -3.4 Thiol:disulfide interchange protein compare
PP_4782 -0.7 -2.8 Phosphomethylpyrimidine kinase compare
PP_2371 -0.7 -3.1 Sulphite reductase hemoprotein, beta subunit compare
PP_0195 -0.7 -2.0 conserved protein of unknown function compare
PP_4824 -0.7 -2.5 Sensor histidine kinase/response regulator compare
PP_5453 -0.7 -1.4 conserved protein of unknown function compare
PP_0809 -0.7 -4.3 disulfide bond formation protein B compare
PP_2337 -0.7 -1.3 aconitate isomerase compare
PP_4353 -0.7 -3.0 Flagellar biosynthetic protein fliR compare
PP_0852 -0.7 -3.4 Transcriptional regulator, Cro/CI family compare
PP_4126 -0.7 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_1193 -0.6 -2.6 conserved membrane protein of unknown function compare
PP_0293 -0.6 -1.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5039 -0.6 -1.9 conserved protein of unknown function compare
PP_4848 -0.6 -2.2 Curved DNA-binding protein compare
PP_4905 -0.6 -3.9 Flagellar motor rotation protein compare
PP_4917 -0.6 -2.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4936 -0.6 -3.1 O-antigen polymerase compare
PP_5748 -0.6 -0.7 cytochrome c heme lyase subunit compare
PP_4214 -0.6 -2.5 pyoverdine biosynthesis related protein compare
PP_2740 -0.6 -1.2 Transcriptional regulator, MerR family compare
PP_3906 -0.6 -1.4 conserved protein of unknown function compare
PP_0377 -0.6 -1.3 coenzyme PQQ synthesis protein D compare
PP_4273 -0.6 -1.1 Transcriptional regulator, MerR family compare
PP_1994 -0.6 -1.3 tRNA pseudouridine (38-40)synthase compare
PP_0120 -0.6 -3.7 putative zinc ABC transporter compare
PP_3762 -0.6 -2.1 Response regulator compare
PP_1454 -0.6 -1.2 conserved protein of unknown function compare
PP_3241 -0.6 -0.9 conserved exported protein of unknown function compare
PP_0421 -0.6 -3.6 Anthranilate phosphoribosyltransferase compare
PP_1097 -0.6 -1.2 Methionine--tRNA ligase compare
PP_1233 -0.6 -1.7 sulfurtransferase compare
PP_2163 -0.6 -2.2 VacJ lipoprotein compare
PP_5610 -0.6 -0.8 protein of unknown function compare
PP_4693 -0.6 -2.7 RNA polymerase-binding transcription factor DksA compare
PP_4352 -0.6 -4.0 flagellin export apparatus, substrate specificity protein compare
PP_4207 -0.6 -2.4 conserved protein of unknown function compare
PP_0508 -0.5 -2.3 conserved exported protein of unknown function compare
PP_2196 -0.5 -0.9 agmatinase compare
PP_5707 -0.5 -2.4 conserved protein of unknown function compare
PP_1348 -0.5 -3.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1995 -0.5 -2.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0908 -0.5 -3.1 conserved exported protein of unknown function compare
PP_5295 -0.5 -0.9 conserved protein of unknown function compare
PP_5471 -0.5 -1.1 putative response regulator receiver protein compare
PP_2931 -0.5 -2.0 conserved protein of unknown function compare
PP_5659 -0.5 -2.2 protein of unknown function compare
PP_4367 -0.5 -2.2 Flagellar assembly protein FliH compare
PP_0440 -0.5 -2.1 Elongation factor Tu-A compare
PP_3102 -0.5 -1.8 conserved protein of unknown function compare
PP_0959 -0.5 -1.1 phospholipid ABC transporter compare
PP_1554 -0.5 -1.7 conserved protein of unknown function compare
PP_1128 -0.5 -1.3 OmpA family protein compare
PP_4122 -0.5 -0.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2416 -0.5 -1.3 putative Iron ABC transporter, ATP-binding protein compare
PP_4341 -0.5 -3.0 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_3493 -0.5 -3.1 Transcriptional regulator, LysR family compare
PP_0184 -0.5 -2.5 Argininosuccinate lyase compare
PP_1026 -0.5 -1.0 Peptidase, M23/M37 family compare
PP_2650 -0.5 -1.6 putative 4-hydroxybutyrate dehydrogenase compare
PP_3286 -0.5 -2.8 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_3002 -0.5 -1.4 shikimate dehydrogenase-related enzyme compare
PP_3065 -0.5 -2.6 Pyocin R2_PP, tail formation compare
PP_1737 -0.5 -3.4 conserved protein of unknown function compare
PP_3707 -0.5 -1.7 conserved protein of unknown function compare
PP_0962 -0.5 -1.6 toluene-tolerance protein compare
PP_1938 -0.5 -1.4 conserved protein of unknown function compare
PP_1560 -0.5 -2.0 conserved protein of unknown function compare
PP_4726 -0.5 -1.1 Chaperone protein DnaJ compare
PP_2402 -0.5 -0.8 putative Sensor histidine kinase compare
PP_1759 -0.5 -2.6 conserved exported protein of unknown function compare
PP_4208 -0.5 -2.8 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_3392 -0.5 -1.2 conserved protein of unknown function compare
PP_5724 -0.5 -2.0 conserved protein of unknown function compare
PP_2672 -0.5 -2.5 Transcriptional activator protein ExaE compare
PP_5027 -0.5 -0.9 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5007 -0.5 -0.7 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_0939 -0.5 -2.6 Carbon-nitrogen hydrolase family protein compare
PP_2341 -0.5 -0.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_3929 -0.5 -1.8 conserved protein of unknown function compare
PP_1428 -0.5 -0.9 Sigma factor AlgU negative regulatory protein compare
PP_0393 -0.5 -0.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4860 -0.5 -3.1 putative Mannose-6-phosphate isomerase compare
PP_5505 -0.5 -1.4 conserved transmembrane protein of unknown function compare
PP_4180 -0.5 -2.1 conserved protein of unknown function compare
PP_1083 -0.5 -2.3 (2Fe-2S)-binding protein compare
PP_4944 -0.5 -1.1 Carbamoyltransferase compare
PP_0961 -0.5 -2.6 toluene tolerance protein compare
PP_0040 -0.5 -1.1 hypothetical protein compare
PP_1738 -0.5 -2.8 conserved exported protein of unknown function compare
PP_1987 -0.5 -0.9 Methlytransferase, UbiE/COQ5 family compare
PP_1548 -0.5 -1.7 conserved protein of unknown function compare
PP_4797 -0.5 -1.3 conserved protein of unknown function compare
PP_1562 -0.5 -1.1 putative Phage terminase, small subunit compare
PP_2030 -0.5 -1.7 conserved protein of unknown function compare
PP_2425 -0.5 -2.5 putative transcriptional regulator, AraC family compare
PP_1346 -0.5 -2.2 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_0434 -0.4 -1.7 Anhydro-N-acetylmuramic acid kinase compare
PP_3359 -0.4 -1.7 putative Hydroxycinnamic acid degradation regulator compare
PP_4286 -0.4 -2.1 allantoinase compare
PP_0119 -0.4 -1.7 putative zinc uptake regulation protein ZUR compare
PP_2595 -0.4 -1.8 putative ABC transporter, permease/ATP-binding protein compare
PP_4369 -0.4 -2.7 Flagellar M-ring protein compare
PP_3463 -0.4 -3.0 phenylacetaldehyde dehydrogenase compare
PP_5104 -0.4 -2.2 thiazole synthase compare
PP_2784 -0.4 -1.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4925 -0.4 -1.8 conserved protein of unknown function compare
PP_3061 -0.4 -1.8 conserved protein of unknown function compare
PP_3773 -0.4 -1.2 conserved protein of unknown function compare
PP_1122 -0.4 -0.9 OmpA family protein compare
PP_4847 -0.4 -1.0 chaperone modulatory of CbpA co-chaperone protein compare
PP_5589 -0.4 -1.5 protein of unknown function containing Rhs repeat-associated core domain compare
PP_1468 -0.4 -0.6 Tyrosine recombinase XerD compare
PP_3481 -0.4 -1.3 conserved exported protein of unknown function compare
PP_3924 -0.4 -1.1 conserved protein of unknown function compare
PP_0503 -0.4 -2.0 Major facilitator family transporter compare
PP_5652 -0.4 -1.4 conserved protein of unknown function, phage origin compare
PP_4739 -0.4 -1.6 conserved protein of unknown function compare
PP_2497 -0.4 -1.2 conserved protein of unknown function compare
PP_5451 -0.4 -2.2 protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in time series experiments

For time series D-Glucose across organisms