Experiment set32IT040 for Pseudomonas putida KT2440

Compare to:

Timeseries; NC condition; Bioreplicate 1; Time 3hrs; Measurement replicate 2

200 most important genes:

  gene name fitness t score description  
PP_4724 -3.9 -2.7 Carbamoyl-phosphate synthase small chain compare
PP_4723 -3.7 -5.6 Carbamoyl-phosphate synthase large chain compare
PP_4999 -2.9 -2.0 dihydroorotase-like protein compare
PP_1198 -2.0 -2.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0846 -1.8 -2.1 DnaK-like molecular chaperone specific for IscU compare
PP_4943 -1.8 -2.4 putative Glycosyl transferase compare
PP_0691 -1.8 -2.1 Glutamate 5-kinase compare
PP_2337 -1.7 -2.8 aconitate isomerase compare
PP_2328 -1.6 -5.1 Phosphoadenosine phosphosulfate reductase compare
PP_2336 -1.6 -3.9 aconitate hydratase 1 compare
PP_2302 -1.5 -4.3 DNA-binding, ATP-dependent protease compare
PP_4909 -1.5 -4.9 phosphoserine phosphatase compare
PP_1898 -1.5 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PP_0959 -1.5 -2.9 phospholipid ABC transporter compare
PP_4008 -1.5 -3.9 ATP-dependent serine protease compare
PP_0339 -1.5 -3.3 Pyruvate dehydrogenase E1 component compare
PP_1734 -1.5 -2.6 Probable septum site-determining protein MinC compare
PP_4936 -1.4 -6.4 O-antigen polymerase compare
PP_0393 -1.4 -2.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2414 -1.4 -1.3 conserved exported protein of unknown function compare
PP_5216 -1.4 -1.9 exopolyphosphatase compare
PP_4902 -1.3 -2.5 Oligoribonuclease compare
PP_4262 -1.3 -1.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_3840 -1.3 -2.2 conserved protein of unknown function compare
PP_1664 -1.3 -2.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_0833 -1.2 -1.5 queuine tRNA-ribosyltransferase compare
PP_5155 -1.2 -4.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5028 -1.2 -3.3 proline iminopeptidase compare
PP_1738 -1.2 -7.5 conserved exported protein of unknown function compare
PP_0809 -1.2 -7.0 disulfide bond formation protein B compare
PP_4942 -1.1 -1.4 conserved protein of unknown function compare
PP_1737 -1.1 -6.8 conserved protein of unknown function compare
PP_1568 -1.1 -1.7 conserved protein of unknown function compare
PP_5583 -1.1 -2.1 conserved protein of unknown function compare
PP_1237 -1.1 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2402 -1.1 -2.1 putative Sensor histidine kinase compare
PP_0293 -1.1 -1.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4824 -1.1 -4.3 Sensor histidine kinase/response regulator compare
PP_4792 -1.1 -3.2 conserved exported protein of unknown function compare
PP_1328 -1.1 -2.8 Protein MraZ compare
PP_5090 -1.1 -1.9 putative cell division protein compare
PP_4354 -1.1 -2.0 flagellar export apparatus subunit compare
PP_4940 -1.1 -6.0 Putative glycosyltransferase compare
PP_5248 -1.1 -1.7 putative hydrolase compare
PP_4098 -1.1 -2.3 UvrABC system protein C compare
PP_4693 -1.0 -5.1 RNA polymerase-binding transcription factor DksA compare
PP_1493 -1.0 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4066 -1.0 -2.0 methylglutaconyl-CoA hydratase compare
PP_4941 -1.0 -2.7 conserved exported protein of unknown function compare
PP_1468 -1.0 -2.2 Tyrosine recombinase XerD compare
PP_5338 -1.0 -1.8 aspartate ammonia-lyase compare
PP_0962 -0.9 -2.7 toluene-tolerance protein compare
PP_5610 -0.9 -1.5 protein of unknown function compare
PP_0627 -0.9 -2.5 conserved protein of unknown function compare
PP_0164 -0.9 -3.9 conserved protein of unknown function compare
PP_0276 -0.9 -1.4 Transcriptional regulator, Cro/CI family compare
PP_3481 -0.8 -1.8 conserved exported protein of unknown function compare
PP_5705 -0.8 -1.4 protein of unknown function compare
PP_0127 -0.8 -2.3 Thiol:disulfide interchange protein compare
PP_5445 -0.8 -1.9 conserved protein of unknown function compare
PP_4254 -0.8 -2.2 conserved protein of unknown function compare
PP_5084 -0.8 -5.2 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_1099 -0.8 -1.4 Cold shock protein CapB compare
PP_5473 -0.8 -2.4 putative transcriptional regulator, LuxR family compare
PP_1826 -0.8 -1.6 Hydrolase, isochorismatase family compare
PP_5717 -0.8 -1.7 conserved protein of unknown function compare
PP_2370 -0.8 -2.4 conserved protein of unknown function compare
PP_2031 -0.8 -2.4 conserved protein of unknown function compare
PP_2581 -0.7 -1.3 conserved protein of unknown function compare
PP_4938 -0.7 -5.2 putative Glycosyl transferase compare
PP_2725 -0.7 -2.0 Protease PfpI compare
PP_4129 -0.7 -1.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4696 -0.7 -2.4 Nitrogen regulation protein NR(I) compare
PP_4370 -0.7 -3.5 Flagellar hook-basal body complex protein FliE compare
PP_5328 -0.7 -1.4 putative phosphate transport system permease protein compare
PP_t10 -0.7 -1.6 tRNA-Pro compare
PP_0547 -0.7 -2.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_5594 -0.7 -1.7 conserved protein of unknown function compare
PP_0246 -0.7 -1.8 two-component system DNA-binding response transcriptional dual regulator compare
PP_2568 -0.7 -1.2 Ring-cleaving dioxygenase compare
PP_5347 -0.7 -4.2 pyruvate carboxylase subunit A compare
PP_4215 -0.7 -2.3 pyoverdine biosynthesis related protein compare
PP_4368 -0.7 -4.0 flagellar motor switch protein compare
PP_0435 -0.7 -2.6 Peptidase, M23/M37 family compare
PP_2740 -0.7 -1.2 Transcriptional regulator, MerR family compare
PP_0905 -0.7 -1.8 conserved exported protein of unknown function compare
PP_2575 -0.7 -1.8 conserved exported protein of unknown function compare
PP_2000 -0.7 -0.8 amidophosphoribosyl transferase compare
PP_1770 -0.7 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4271 -0.7 -1.0 conserved protein of unknown function compare
PP_1088 -0.7 -4.4 Argininosuccinate synthase compare
PP_4067 -0.7 -4.0 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_3898 -0.6 -2.2 conserved protein of unknown function compare
PP_1935 -0.6 -1.9 Transcriptional regulator, Cro/CI family compare
PP_4944 -0.6 -1.8 Carbamoyltransferase compare
PP_2737 -0.6 -1.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4829 -0.6 -2.0 putative precorrin-3B synthase compare
PP_1218 -0.6 -2.2 putative acyl-CoA thioesterase compare
PP_2474 -0.6 -2.1 Glutathione S-transferase family protein compare
PP_4396 -0.6 -2.1 conserved protein of unknown function compare
PP_0184 -0.6 -3.2 Argininosuccinate lyase compare
PP_0065 -0.6 -1.2 NAD-binding component of TrK potassium transporter compare
PP_0218 -0.6 -3.7 Sensory box protein compare
PP_2452 -0.6 -2.9 conserved protein of unknown function compare
PP_5052 -0.6 -2.5 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_2650 -0.6 -2.1 putative 4-hydroxybutyrate dehydrogenase compare
PP_2759 -0.6 -2.2 ribose ABC transporter - ATP-binding subunit compare
PP_2371 -0.6 -2.8 Sulphite reductase hemoprotein, beta subunit compare
PP_1233 -0.6 -2.0 sulfurtransferase compare
PP_4804 -0.6 -1.8 RlpA-like lipoprotein compare
PP_1374 -0.6 -2.1 conserved protein of unknown function compare
PP_3245 -0.6 -1.1 conserved protein of unknown function compare
PP_1999 -0.6 -1.0 membrane protein required for colicin V production compare
PP_3378 -0.6 -1.4 putative 2-ketogluconokinase compare
PP_1783 -0.6 -1.0 dTDP-glucose pyrophosphorylase compare
PP_1215 -0.6 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_3365 -0.6 -1.0 Acetolactate synthase compare
PP_5556 -0.6 -2.4 putative bacteriophage lysis protein compare
PP_0831 -0.6 -3.2 hypothetical protein compare
PP_3999 -0.6 -2.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1733 -0.6 -1.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_5191 -0.6 -1.8 conserved exported protein of unknown function compare
PP_1994 -0.6 -1.2 tRNA pseudouridine (38-40)synthase compare
PP_2197 -0.6 -1.9 conserved exported protein of unknown function compare
PP_2883 -0.5 -1.3 conserved protein of unknown function compare
PP_0048 -0.5 -1.1 conserved protein of unknown function compare
PP_1041 -0.5 -1.6 twin arginine protein export complex subunit compare
PP_4199 -0.5 -0.8 putative Lipoprotein compare
PP_1673 -0.5 -1.9 cobyrinate a,c-diamide synthase compare
PP_5329 -0.5 -1.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5604 -0.5 -1.1 putative subtilisin-like serine protease compare
PP_5348 -0.5 -3.8 Transcriptional regulator, LysR family compare
PP_0153 -0.5 -1.3 hypothetical protein compare
PP_1415 -0.5 -1.5 putative membrane associated enzyme subunit compare
PP_2999 -0.5 -1.1 Glyoxalase family protein compare
PP_2253 -0.5 -1.0 Transcriptional regulator, GntR family compare
PP_2784 -0.5 -2.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4352 -0.5 -4.0 flagellin export apparatus, substrate specificity protein compare
PP_0287 -0.5 -3.6 conserved exported protein of unknown function compare
PP_0232 -0.5 -1.0 ATP-binding taurine transporter subunit compare
PP_4130 -0.5 -1.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4094 -0.5 -1.0 conserved protein of unknown function compare
PP_2723 -0.5 -2.1 Uncharacterized oxidoreductase YhdF compare
PP_5230 -0.5 -1.2 Tyrosine recombinase XerC compare
PP_4366 -0.5 -4.0 flagellum-specific ATP synthase compare
PP_1654 -0.5 -1.3 cysteine synthase B compare
PP_0250 -0.5 -1.2 heat shock protein Hsp15 involved in ribosome recycling compare
PP_3363 -0.5 -2.1 putative thymidylate kinase compare
PP_5471 -0.5 -1.3 putative response regulator receiver protein compare
PP_3903 -0.5 -1.0 conserved protein of unknown function compare
PP_5327 -0.5 -1.5 putative phosphate ABC transporter, permease subunit compare
PP_4880 -0.5 -2.7 exoribonuclease R compare
PP_5652 -0.5 -1.4 conserved protein of unknown function, phage origin compare
PP_4120 -0.5 -1.5 NADH-quinone oxidoreductase subunit B compare
PP_3375 -0.5 -2.4 endonuclease I compare
PP_5346 -0.5 -2.7 pyruvate carboxylase subunit B compare
PP_1628 -0.5 -1.6 NMN amidohydrolase compare
PP_4344 -0.5 -3.7 flagellar export pore protein compare
PP_3318 -0.5 -1.4 conserved protein of unknown function compare
PP_4721 -0.5 -2.1 conserved membrane protein of unknown function compare
PP_0781 -0.5 -1.6 conserved protein of unknown function compare
PP_3551 -0.5 -1.1 DNA-binding response regulator, LuxR family compare
PP_4720 -0.5 -1.4 putative RNA binding protein compare
PP_2762 -0.5 -2.7 acyl-CoA dehydrogenase/oxidase family protein compare
PP_4808 -0.5 -1.3 23S rRNA m3psi1915 methyltransferase compare
PP_1829 -0.5 -0.7 Hydrolase, alpha/beta fold family compare
PP_4376 -0.5 -3.7 flagellar filament capping protein compare
PP_2866 -0.5 -2.0 FMN-dependent NADH-azoreductase 1 compare
PP_0761 -0.5 -2.7 Ribosomal RNA small subunit methyltransferase C compare
PP_2903 -0.5 -0.9 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4509 -0.5 -2.2 conserved protein of unknown function compare
PP_4365 -0.5 -2.5 Flagellar protein FliJ compare
PP_4561 -0.5 -0.7 stress response protein compare
PP_4418 -0.5 -2.4 conserved protein of unknown function compare
PP_1142 -0.5 -0.8 conserved protein of unknown function compare
PP_4997 -0.5 -1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0398 -0.4 -2.0 Thiosulfate sulfurtransferase GlpE compare
PP_4183 -0.4 -2.8 conserved membrane protein of unknown function compare
PP_1362 -0.4 -1.2 pyruvate kinase II compare
PP_1217 -0.4 -1.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4361 -0.4 -2.8 Flagellar hook-length control protein FliK compare
PP_1326 -0.4 -1.3 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_4471 -0.4 -1.4 Magnesium transporter compare
PP_1325 -0.4 -2.1 putative lipoprotein compare
PP_4391 -0.4 -2.3 flagellar basal-body rod protein FlgB compare
PP_4988 -0.4 -1.7 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_3188 -0.4 -2.3 conserved protein of unknown function compare
PP_5313 -0.4 -1.5 DNA-binding protein HU-alpha compare
PP_1706 -0.4 -1.6 Nitrite reductase compare
PP_3726 -0.4 -0.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_3821 -0.4 -3.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1430 -0.4 -2.7 putative periplasmic serine endoprotease DegP-like compare
PP_5350 -0.4 -1.6 Transcriptional regulator, RpiR family compare
PP_2760 -0.4 -1.2 putative ribose transport permease protein compare
PP_4378 -0.4 -3.7 flagellin, filament structural protein compare
PP_0294 -0.4 -2.2 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) compare
PP_4837 -0.4 -1.2 conserved protein of unknown function compare
PP_1742 -0.4 -1.7 conserved inner membrane protein of unknown function compare
PP_0888 -0.4 -0.8 Photosynthetic apparatus regulatory protein RegA compare
PP_1629 -0.4 -2.1 Protein RecA compare


Specific Phenotypes

For 2 genes in this experiment

For time series D-Glucose in Pseudomonas putida KT2440

For time series D-Glucose across organisms