Experiment set32IT038 for Pseudomonas putida KT2440

Compare to:

Timeseries; MAX condition; Bioreplicate 1; Time 3hrs; Measurement replicate 2

200 most important genes:

  gene name fitness t score description  
PP_4723 -4.2 -5.0 Carbamoyl-phosphate synthase large chain compare
PP_0719 -3.6 -2.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4724 -3.5 -4.2 Carbamoyl-phosphate synthase small chain compare
PP_4999 -3.2 -2.2 dihydroorotase-like protein compare
PP_1664 -2.6 -5.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_1898 -2.4 -2.9 MotA/TolQ/ExbB proton channel family protein compare
PP_5328 -2.2 -3.4 putative phosphate transport system permease protein compare
PP_1734 -2.2 -4.7 Probable septum site-determining protein MinC compare
PP_2328 -2.1 -5.7 Phosphoadenosine phosphosulfate reductase compare
PP_1764 -2.0 -3.0 Phosphoglycolate phosphatase 2 compare
PP_1237 -1.8 -3.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1783 -1.8 -2.5 dTDP-glucose pyrophosphorylase compare
PP_0691 -1.8 -2.4 Glutamate 5-kinase compare
PP_0339 -1.7 -4.2 Pyruvate dehydrogenase E1 component compare
PP_t12 -1.5 -1.8 tRNA-Thr compare
PP_0393 -1.4 -2.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1198 -1.3 -2.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4546 -1.3 -3.6 ATP-dependent helicase HrpA compare
PP_4196 -1.2 -2.9 conserved exported protein of unknown function compare
PP_2370 -1.2 -1.9 conserved protein of unknown function compare
PP_0083 -1.1 -4.4 tryptophan synthase beta chain compare
PP_4004 -1.1 -2.5 DNA translocase FtsK compare
PP_0435 -1.1 -3.8 Peptidase, M23/M37 family compare
PP_5155 -1.1 -5.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4902 -1.1 -2.4 Oligoribonuclease compare
PP_0082 -1.0 -3.8 tryptophan synthase alpha chain compare
PP_2668 -1.0 -2.2 ABC efflux transporter, ATP-binding protein compare
PP_4942 -1.0 -2.1 conserved protein of unknown function compare
PP_3999 -1.0 -4.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2433 -1.0 -1.9 conserved protein of unknown function compare
PP_2371 -1.0 -4.6 Sulphite reductase hemoprotein, beta subunit compare
PP_4355 -1.0 -2.6 flagellar export apparatus subunit compare
PP_0434 -1.0 -2.8 Anhydro-N-acetylmuramic acid kinase compare
PP_4782 -1.0 -3.4 Phosphomethylpyrimidine kinase compare
PP_4126 -1.0 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_4936 -1.0 -5.5 O-antigen polymerase compare
PP_4129 -0.9 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1912 -0.9 -2.7 Phosphate acyltransferase compare
PP_4383 -0.9 -4.1 Flagellar P-ring protein compare
PP_1190 -0.9 -4.1 conserved protein of unknown function compare
PP_2976 -0.9 -2.0 putative transposase compare
PP_1215 -0.9 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_1738 -0.8 -5.5 conserved exported protein of unknown function compare
PP_4353 -0.8 -4.3 Flagellar biosynthetic protein fliR compare
PP_5090 -0.8 -2.9 putative cell division protein compare
PP_2145 -0.8 -1.7 beta-N-acetylglucosaminidase compare
PP_0406 -0.8 -1.9 Nucleotidyltransferase family protein compare
PP_5331 -0.8 -1.8 Long-chain acyl-CoA thioester hydrolase compare
PP_0048 -0.8 -1.7 conserved protein of unknown function compare
PP_3899 -0.8 -2.6 conserved protein of unknown function, hicB family compare
PP_1045 -0.8 -2.2 Type II secretion pathway protein XcpP compare
PP_0164 -0.8 -4.6 conserved protein of unknown function compare
PP_0135 -0.8 -2.8 conserved exported protein of unknown function compare
PP_2402 -0.8 -1.8 putative Sensor histidine kinase compare
PP_4204 -0.8 -3.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4693 -0.7 -3.0 RNA polymerase-binding transcription factor DksA compare
PP_4808 -0.7 -1.0 23S rRNA m3psi1915 methyltransferase compare
PP_5008 -0.7 -1.4 Poly granule-associated protein compare
PP_1774 -0.7 -2.4 conserved exported protein of unknown function compare
PP_5216 -0.7 -1.5 exopolyphosphatase compare
PP_3110 -0.7 -1.8 protein of unknown function compare
PP_4344 -0.7 -5.4 flagellar export pore protein compare
PP_4120 -0.7 -2.1 NADH-quinone oxidoreductase subunit B compare
PP_1737 -0.7 -5.1 conserved protein of unknown function compare
PP_4804 -0.7 -1.7 RlpA-like lipoprotein compare
PP_3460 -0.7 -1.8 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4367 -0.7 -3.6 Flagellar assembly protein FliH compare
PP_4352 -0.7 -5.0 flagellin export apparatus, substrate specificity protein compare
PP_4376 -0.7 -5.3 flagellar filament capping protein compare
PP_4739 -0.7 -2.3 conserved protein of unknown function compare
PP_4988 -0.7 -2.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4874 -0.7 -1.1 50S ribosomal protein L9 compare
PP_0513 -0.7 -1.7 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2880 -0.6 -0.8 Transcriptional regulator, TetR family compare
PP_2520 -0.6 -2.1 conserved protein of unknown function compare
PP_4341 -0.6 -4.4 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_1328 -0.6 -2.1 Protein MraZ compare
PP_2107 -0.6 -1.4 conserved protein of unknown function compare
PP_4008 -0.6 -2.0 ATP-dependent serine protease compare
PP_2302 -0.6 -1.9 DNA-binding, ATP-dependent protease compare
PP_4909 -0.6 -2.4 phosphoserine phosphatase compare
PP_0760 -0.6 -2.4 conserved membrane protein of unknown function compare
PP_4811 -0.6 -3.0 Gamma-glutamyl phosphate reductase compare
PP_1994 -0.6 -1.5 tRNA pseudouridine (38-40)synthase compare
PP_4994 -0.6 -1.1 conserved protein of unknown function compare
PP_1430 -0.6 -3.7 putative periplasmic serine endoprotease DegP-like compare
PP_5453 -0.6 -1.7 conserved protein of unknown function compare
PP_2899 -0.6 -1.3 conserved exported protein of unknown function compare
PP_4785 -0.6 -3.6 conserved exported protein of unknown function compare
PP_0127 -0.6 -3.3 Thiol:disulfide interchange protein compare
PP_4917 -0.6 -2.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0642 -0.6 -2.6 conserved membrane protein of unknown function compare
PP_2341 -0.6 -1.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4366 -0.6 -4.6 flagellum-specific ATP synthase compare
PP_5028 -0.6 -1.5 proline iminopeptidase compare
PP_3307 -0.6 -1.1 conserved protein of unknown function compare
PP_4365 -0.6 -2.7 Flagellar protein FliJ compare
PP_4738 -0.6 -2.1 conserved exported protein of unknown function compare
PP_4369 -0.6 -4.3 Flagellar M-ring protein compare
PP_4384 -0.6 -4.2 Flagellar L-ring protein compare
PP_0809 -0.6 -4.2 disulfide bond formation protein B compare
PP_5329 -0.6 -1.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0421 -0.6 -4.0 Anthranilate phosphoribosyltransferase compare
PP_1268 -0.6 -2.4 putative HtrA suppressor protein sohA compare
PP_1503 -0.6 -2.3 conserved protein of unknown function compare
PP_2137 -0.6 -1.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_2527 -0.6 -3.6 conserved membrane protein of unknown function compare
PP_4379 -0.6 -1.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4368 -0.6 -2.8 flagellar motor switch protein compare
PP_2031 -0.6 -1.9 conserved protein of unknown function compare
PP_0405 -0.6 -3.6 conserved protein of unknown function compare
PP_5393 -0.6 -0.9 putative metal-binding chaperone compare
PP_2640 -0.6 -2.1 Acetyltransferase, GNAT family compare
PP_4645 -0.6 -1.7 Large-conductance mechanosensitive channel compare
PP_4396 -0.5 -2.5 conserved protein of unknown function compare
PP_5579 -0.5 -3.2 conserved protein of unknown function compare
PP_4388 -0.5 -4.5 Flagellar hook protein FlgE compare
PP_4214 -0.5 -2.4 pyoverdine biosynthesis related protein compare
PP_4944 -0.5 -1.7 Carbamoyltransferase compare
PP_1770 -0.5 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5495 -0.5 -1.0 protein of unknown function compare
PP_5045 -0.5 -2.1 tRNA sulfurtransferase compare
PP_0832 -0.5 -2.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1824 -0.5 -0.9 Smr domain protein compare
PP_0677 -0.5 -2.3 putative Lipoprotein compare
PP_4375 -0.5 -3.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_4386 -0.5 -2.8 flagellar basal-body rod protein FlgF compare
PP_4342 -0.5 -1.9 flagellar synthesis regulator, putative ATPase compare
PP_1833 -0.5 -2.3 conserved protein of unknown function compare
PP_2720 -0.5 -1.0 conserved protein of unknown function compare
PP_2414 -0.5 -1.0 conserved exported protein of unknown function compare
PP_2525 -0.5 -2.3 conserved protein of unknown function compare
PP_4394 -0.5 -3.4 flagella basal body P-ring formation protein compare
PP_4696 -0.5 -2.2 Nitrogen regulation protein NR(I) compare
PP_4380 -0.5 -4.5 Flagellar hook-associated protein FlgL compare
PP_0007 -0.5 -1.8 conserved hypothetical protein compare
PP_4370 -0.5 -2.7 Flagellar hook-basal body complex protein FliE compare
PP_4824 -0.5 -2.1 Sensor histidine kinase/response regulator compare
PP_1654 -0.5 -2.1 cysteine synthase B compare
PP_2972 -0.5 -1.5 conserved protein of unknown function compare
PP_1116 -0.5 -2.8 Site-specific recombinase, resolvase family compare
PP_5289 -0.5 -1.9 Acetylglutamate kinase compare
PP_4941 -0.5 -2.2 conserved exported protein of unknown function compare
PP_4343 -0.5 -2.6 Flagellar biosynthesis protein FlhF compare
PP_4358 -0.5 -3.5 flagellar synthesis, switching and energizing component compare
PP_4378 -0.5 -4.2 flagellin, filament structural protein compare
PP_5348 -0.5 -3.7 Transcriptional regulator, LysR family compare
PP_5104 -0.5 -3.0 thiazole synthase compare
PP_3902 -0.5 -1.7 conserved protein of unknown function compare
PP_5473 -0.5 -1.6 putative transcriptional regulator, LuxR family compare
PP_1554 -0.5 -0.9 conserved protein of unknown function compare
PP_1099 -0.5 -1.4 Cold shock protein CapB compare
PP_0422 -0.5 -2.7 Indole-3-glycerol phosphate synthase compare
PP_5217 -0.5 -4.0 Polyphosphate kinase compare
PP_2000 -0.5 -0.7 amidophosphoribosyl transferase compare
PP_1348 -0.5 -2.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4223 -0.5 -1.4 diaminobutyrate-2-oxoglutarate transaminase compare
PP_0593 -0.5 -0.8 putative ribosome-binding factor compare
PP_2826 -0.5 -1.4 Transcriptional regulator MexT compare
PP_1366 -0.5 -0.6 Transcriptional regulator MvaT, P16 subunit compare
PP_1938 -0.5 -1.7 conserved protein of unknown function compare
PP_4296 -0.5 -0.9 conserved exported protein of unknown function compare
PP_3685 -0.5 -2.4 conserved protein of unknown function compare
PP_0762 -0.5 -2.4 Glycerate dehydrogenase compare
PP_2191 -0.5 -2.0 putative Lipoprotein compare
PP_5654 -0.5 -1.5 putative phosphotriesterase compare
PP_1733 -0.4 -1.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_4331 -0.4 -2.9 conserved protein of unknown function compare
PP_0287 -0.4 -3.3 conserved exported protein of unknown function compare
PP_2756 -0.4 -1.5 conserved protein of unknown function compare
PP_4382 -0.4 -2.9 Peptidoglycan hydrolase FlgJ compare
PP_5639 -0.4 -2.8 conserved exported protein of unknown function compare
PP_4880 -0.4 -2.5 exoribonuclease R compare
PP_4381 -0.4 -3.6 Flagellar hook-associated protein FlgK compare
PP_0307 -0.4 -1.8 conserved exported protein of unknown function compare
PP_5441 -0.4 -1.2 protein of unknown function compare
PP_4391 -0.4 -2.8 flagellar basal-body rod protein FlgB compare
PP_1559 -0.4 -1.5 Holin compare
PP_0787 -0.4 -1.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4337 -0.4 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4793 -0.4 -1.5 conserved protein of unknown function compare
PP_1813 -0.4 -1.8 ComEA-related protein compare
PP_2499 -0.4 -1.1 conserved protein of unknown function compare
PP_4354 -0.4 -1.5 flagellar export apparatus subunit compare
PP_2127 -0.4 -2.0 Sensor histidine kinase compare
PP_2950 -0.4 -1.5 conserved protein of unknown function compare
PP_1571 -0.4 -1.5 conserved protein of unknown function compare
PP_4419 -0.4 -1.5 transposase compare
PP_1576 -0.4 -2.3 putative Immunity protein compare
PP_0401 -0.4 -1.5 Ribosomal RNA small subunit methyltransferase A compare
PP_2738 -0.4 -1.5 putative Transcriptional regulator compare
PP_4997 -0.4 -1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4966 -0.4 -1.6 transcriptional regulator of methionine metabolism compare
PP_0417 -0.4 -3.4 Anthranilate synthase component 1 compare
PP_1273 -0.4 -2.5 putative Multidrug efflux MFS outer membrane protein compare
PP_2189 -0.4 -1.4 conserved protein of unknown function compare
PP_4121 -0.4 -1.4 NADH-quinone oxidoreductase subunit C/D compare
PP_1255 -0.4 -1.6 putative cis-4-hydroxy-D-proline oxidase compare
PP_t10 -0.4 -0.9 tRNA-Pro compare
PP_4575 -0.4 -1.4 Urea amidolyase-related protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in time series experiments

For time series D-Glucose across organisms